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Ok-landscape
GitHub Repository: Ok-landscape/computational-pipeline
Path: blob/main/latex-templates/templates/machine-learning/svm.tex
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\documentclass[a4paper, 11pt]{article}
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\usepackage[utf8]{inputenc}
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\usepackage[T1]{fontenc}
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\usepackage{amsmath, amssymb}
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\usepackage{graphicx}
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\usepackage{booktabs}
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\usepackage{siunitx}
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\usepackage{float}
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\usepackage{geometry}
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\geometry{margin=1in}
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\usepackage[makestderr]{pythontex}
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\title{Support Vector Machines: Kernels and Classification}
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\author{Machine Learning Foundations}
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\date{\today}
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\begin{document}
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\maketitle
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\begin{abstract}
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This document presents a comprehensive analysis of Support Vector Machines (SVM) including hard and soft margin classification, the kernel trick for nonlinear decision boundaries, hyperparameter tuning (C and gamma), and multi-class strategies. We visualize decision boundaries, support vectors, and margin regions.
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\end{abstract}
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\section{Introduction}
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Support Vector Machines find the maximum margin hyperplane separating classes:
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\begin{equation}
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\min_{w,b} \frac{1}{2}\|w\|^2 \quad \text{subject to} \quad y_i(w \cdot x_i + b) \geq 1
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\end{equation}
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For soft margin SVM with slack variables $\xi_i$:
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\begin{equation}
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\min_{w,b,\xi} \frac{1}{2}\|w\|^2 + C\sum_{i=1}^{n}\xi_i
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\end{equation}
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The kernel trick replaces dot products: $K(x_i, x_j) = \phi(x_i) \cdot \phi(x_j)$
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Common kernels:
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\begin{itemize}
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\item Linear: $K(x, x') = x \cdot x'$
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\item RBF: $K(x, x') = \exp(-\gamma \|x - x'\|^2)$
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\item Polynomial: $K(x, x') = (x \cdot x' + c)^d$
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\end{itemize}
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\section{Computational Environment}
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\begin{pycode}
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import numpy as np
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import matplotlib.pyplot as plt
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from scipy.spatial.distance import cdist
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import warnings
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warnings.filterwarnings('ignore')
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plt.rc('text', usetex=True)
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plt.rc('font', family='serif')
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np.random.seed(42)
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def save_plot(filename, caption):
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plt.savefig(filename, bbox_inches='tight', dpi=150)
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print(r'\begin{figure}[H]')
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print(r'\centering')
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print(r'\includegraphics[width=0.85\textwidth]{' + filename + '}')
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print(r'\caption{' + caption + '}')
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print(r'\end{figure}')
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plt.close()
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\end{pycode}
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\section{Data Generation}
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\begin{pycode}
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# Generate linearly separable data
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def make_linear_data(n_samples, margin=0.5, random_state=42):
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np.random.seed(random_state)
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n_per_class = n_samples // 2
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X = np.vstack([
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np.random.randn(n_per_class, 2) + [2, 2],
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np.random.randn(n_per_class, 2) + [-2, -2]
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])
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y = np.array([1]*n_per_class + [-1]*n_per_class)
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idx = np.random.permutation(n_samples)
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return X[idx], y[idx]
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# Generate nonlinear data (circles)
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def make_circles_data(n_samples, noise=0.1, random_state=42):
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np.random.seed(random_state)
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n_per_class = n_samples // 2
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theta = np.linspace(0, 2*np.pi, n_per_class)
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X_outer = np.column_stack([2*np.cos(theta), 2*np.sin(theta)])
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X_inner = np.column_stack([0.5*np.cos(theta), 0.5*np.sin(theta)])
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X = np.vstack([X_outer + noise*np.random.randn(n_per_class, 2),
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X_inner + noise*np.random.randn(n_per_class, 2)])
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y = np.array([1]*n_per_class + [-1]*n_per_class)
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idx = np.random.permutation(n_samples)
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return X[idx], y[idx]
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# Create datasets
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X_linear, y_linear = make_linear_data(200)
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X_circles, y_circles = make_circles_data(200, noise=0.15)
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# Split
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X_linear_train, X_linear_test = X_linear[:150], X_linear[150:]
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y_linear_train, y_linear_test = y_linear[:150], y_linear[150:]
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X_circles_train, X_circles_test = X_circles[:150], X_circles[150:]
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y_circles_train, y_circles_test = y_circles[:150], y_circles[150:]
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# Plot datasets
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fig, axes = plt.subplots(1, 2, figsize=(12, 5))
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axes[0].scatter(X_linear[y_linear==1, 0], X_linear[y_linear==1, 1],
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c='blue', alpha=0.6, s=40, label='Class +1')
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axes[0].scatter(X_linear[y_linear==-1, 0], X_linear[y_linear==-1, 1],
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c='red', alpha=0.6, s=40, label='Class -1')
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axes[0].set_xlabel('Feature 1')
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axes[0].set_ylabel('Feature 2')
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axes[0].set_title('Linearly Separable Data')
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axes[0].legend()
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axes[0].grid(True, alpha=0.3)
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axes[1].scatter(X_circles[y_circles==1, 0], X_circles[y_circles==1, 1],
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c='blue', alpha=0.6, s=40, label='Class +1')
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axes[1].scatter(X_circles[y_circles==-1, 0], X_circles[y_circles==-1, 1],
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c='red', alpha=0.6, s=40, label='Class -1')
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axes[1].set_xlabel('Feature 1')
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axes[1].set_ylabel('Feature 2')
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axes[1].set_title('Nonlinearly Separable Data (Circles)')
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axes[1].legend()
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axes[1].grid(True, alpha=0.3)
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plt.tight_layout()
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save_plot('svm_data.pdf', 'Classification datasets: linearly and nonlinearly separable.')
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\end{pycode}
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\section{SVM Implementation}
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\begin{pycode}
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class SVM:
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def __init__(self, kernel='linear', C=1.0, gamma=1.0, degree=3):
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self.kernel = kernel
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self.C = C
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self.gamma = gamma
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self.degree = degree
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self.alpha = None
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self.support_vectors = None
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self.support_labels = None
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self.b = 0
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def _kernel_function(self, X1, X2):
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if self.kernel == 'linear':
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return X1 @ X2.T
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elif self.kernel == 'rbf':
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sq_dist = cdist(X1, X2, 'sqeuclidean')
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return np.exp(-self.gamma * sq_dist)
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elif self.kernel == 'poly':
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return (1 + X1 @ X2.T)**self.degree
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def fit(self, X, y):
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n_samples = len(X)
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K = self._kernel_function(X, X)
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# Simple SMO-like algorithm (simplified)
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self.alpha = np.zeros(n_samples)
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for _ in range(100): # Iterations
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for i in range(n_samples):
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Ei = np.sum(self.alpha * y * K[i]) - y[i]
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if (y[i] * Ei < -0.01 and self.alpha[i] < self.C) or \
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(y[i] * Ei > 0.01 and self.alpha[i] > 0):
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j = np.random.choice([k for k in range(n_samples) if k != i])
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Ej = np.sum(self.alpha * y * K[j]) - y[j]
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alpha_i_old, alpha_j_old = self.alpha[i], self.alpha[j]
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if y[i] != y[j]:
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L = max(0, self.alpha[j] - self.alpha[i])
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H = min(self.C, self.C + self.alpha[j] - self.alpha[i])
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else:
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L = max(0, self.alpha[i] + self.alpha[j] - self.C)
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H = min(self.C, self.alpha[i] + self.alpha[j])
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if L == H:
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continue
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eta = 2 * K[i, j] - K[i, i] - K[j, j]
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if eta >= 0:
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continue
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self.alpha[j] -= y[j] * (Ei - Ej) / eta
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self.alpha[j] = np.clip(self.alpha[j], L, H)
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self.alpha[i] += y[i] * y[j] * (alpha_j_old - self.alpha[j])
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# Extract support vectors
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sv_mask = self.alpha > 1e-5
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self.support_vectors = X[sv_mask]
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self.support_labels = y[sv_mask]
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self.alpha = self.alpha[sv_mask]
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# Compute bias
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K_sv = self._kernel_function(self.support_vectors, self.support_vectors)
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self.b = np.mean(self.support_labels -
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np.sum(self.alpha * self.support_labels * K_sv, axis=1))
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return self
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def decision_function(self, X):
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K = self._kernel_function(X, self.support_vectors)
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return np.sum(self.alpha * self.support_labels * K, axis=1) + self.b
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def predict(self, X):
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return np.sign(self.decision_function(X))
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def score(self, X, y):
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return np.mean(self.predict(X) == y)
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\end{pycode}
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\section{Linear SVM}
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\begin{pycode}
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def plot_svm_decision_boundary(model, X, y, ax, title):
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h = 0.05
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x_min, x_max = X[:, 0].min() - 1, X[:, 0].max() + 1
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y_min, y_max = X[:, 1].min() - 1, X[:, 1].max() + 1
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xx, yy = np.meshgrid(np.arange(x_min, x_max, h),
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np.arange(y_min, y_max, h))
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Z = model.decision_function(np.c_[xx.ravel(), yy.ravel()])
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Z = Z.reshape(xx.shape)
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# Decision boundary and margins
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ax.contourf(xx, yy, Z, levels=[-100, 0, 100], alpha=0.3, colors=['red', 'blue'])
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ax.contour(xx, yy, Z, levels=[-1, 0, 1], colors=['red', 'black', 'blue'],
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linestyles=['--', '-', '--'], linewidths=[1, 2, 1])
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# Data points
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ax.scatter(X[y==1, 0], X[y==1, 1], c='blue', alpha=0.6, s=40)
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ax.scatter(X[y==-1, 0], X[y==-1, 1], c='red', alpha=0.6, s=40)
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# Support vectors
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if model.support_vectors is not None:
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ax.scatter(model.support_vectors[:, 0], model.support_vectors[:, 1],
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s=150, facecolors='none', edgecolors='black', linewidths=2)
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ax.set_xlabel('Feature 1')
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ax.set_ylabel('Feature 2')
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ax.set_title(title)
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ax.grid(True, alpha=0.3)
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# Train linear SVM
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svm_linear = SVM(kernel='linear', C=1.0)
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svm_linear.fit(X_linear_train, y_linear_train)
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linear_train_acc = svm_linear.score(X_linear_train, y_linear_train)
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linear_test_acc = svm_linear.score(X_linear_test, y_linear_test)
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n_sv_linear = len(svm_linear.support_vectors)
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# Visualize
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fig, ax = plt.subplots(figsize=(8, 6))
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plot_svm_decision_boundary(svm_linear, X_linear, y_linear, ax,
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f'Linear SVM (Accuracy: {linear_test_acc:.2f}, SVs: {n_sv_linear})')
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save_plot('svm_linear.pdf', 'Linear SVM decision boundary with support vectors highlighted.')
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\end{pycode}
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Linear SVM: Training accuracy = \py{f"{linear_train_acc:.3f}"}, Test accuracy = \py{f"{linear_test_acc:.3f}"}, Support vectors = \py{n_sv_linear}.
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\section{RBF Kernel SVM}
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\begin{pycode}
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# Train RBF SVM on circles data
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svm_rbf = SVM(kernel='rbf', C=10.0, gamma=1.0)
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svm_rbf.fit(X_circles_train, y_circles_train)
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rbf_train_acc = svm_rbf.score(X_circles_train, y_circles_train)
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rbf_test_acc = svm_rbf.score(X_circles_test, y_circles_test)
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n_sv_rbf = len(svm_rbf.support_vectors)
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fig, ax = plt.subplots(figsize=(8, 6))
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plot_svm_decision_boundary(svm_rbf, X_circles, y_circles, ax,
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f'RBF SVM (Accuracy: {rbf_test_acc:.2f}, SVs: {n_sv_rbf})')
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save_plot('svm_rbf.pdf', 'RBF kernel SVM decision boundary for nonlinear data.')
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\end{pycode}
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RBF SVM: Training accuracy = \py{f"{rbf_train_acc:.3f}"}, Test accuracy = \py{f"{rbf_test_acc:.3f}"}.
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\section{Effect of C Parameter}
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\begin{pycode}
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# Compare different C values
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C_values = [0.01, 0.1, 1.0, 10.0]
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fig, axes = plt.subplots(2, 2, figsize=(12, 10))
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for ax, C in zip(axes.flat, C_values):
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svm_temp = SVM(kernel='rbf', C=C, gamma=1.0)
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svm_temp.fit(X_circles_train, y_circles_train)
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acc = svm_temp.score(X_circles_test, y_circles_test)
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n_sv = len(svm_temp.support_vectors)
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plot_svm_decision_boundary(svm_temp, X_circles, y_circles, ax,
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f'C = {C}, Accuracy = {acc:.2f}, SVs = {n_sv}')
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plt.tight_layout()
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save_plot('svm_c_effect.pdf', 'Effect of regularization parameter C on SVM decision boundary.')
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\end{pycode}
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\section{Effect of Gamma Parameter}
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\begin{pycode}
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# Compare different gamma values
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gamma_values = [0.1, 0.5, 1.0, 5.0]
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fig, axes = plt.subplots(2, 2, figsize=(12, 10))
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for ax, gamma in zip(axes.flat, gamma_values):
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svm_temp = SVM(kernel='rbf', C=1.0, gamma=gamma)
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svm_temp.fit(X_circles_train, y_circles_train)
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acc = svm_temp.score(X_circles_test, y_circles_test)
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n_sv = len(svm_temp.support_vectors)
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plot_svm_decision_boundary(svm_temp, X_circles, y_circles, ax,
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f'gamma = {gamma}, Acc = {acc:.2f}, SVs = {n_sv}')
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plt.tight_layout()
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save_plot('svm_gamma_effect.pdf', 'Effect of RBF kernel parameter gamma on decision boundary.')
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\end{pycode}
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\section{Kernel Comparison}
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\begin{pycode}
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# Compare different kernels
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kernels = ['linear', 'rbf', 'poly']
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fig, axes = plt.subplots(1, 3, figsize=(15, 5))
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kernel_results = []
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for ax, kernel in zip(axes, kernels):
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if kernel == 'linear':
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svm_temp = SVM(kernel=kernel, C=1.0)
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elif kernel == 'rbf':
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svm_temp = SVM(kernel=kernel, C=10.0, gamma=1.0)
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else:
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svm_temp = SVM(kernel=kernel, C=1.0, degree=3)
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svm_temp.fit(X_circles_train, y_circles_train)
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acc = svm_temp.score(X_circles_test, y_circles_test)
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n_sv = len(svm_temp.support_vectors)
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kernel_results.append((kernel, acc, n_sv))
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plot_svm_decision_boundary(svm_temp, X_circles, y_circles, ax,
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f'{kernel.upper()} Kernel (Acc: {acc:.2f})')
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plt.tight_layout()
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save_plot('svm_kernels.pdf', 'Comparison of different kernels on nonlinear data.')
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\end{pycode}
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\section{Hyperparameter Tuning}
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\begin{pycode}
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# Grid search over C and gamma
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C_range = [0.1, 1.0, 10.0]
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gamma_range = [0.1, 1.0, 10.0]
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results = np.zeros((len(C_range), len(gamma_range)))
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for i, C in enumerate(C_range):
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for j, gamma in enumerate(gamma_range):
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svm_temp = SVM(kernel='rbf', C=C, gamma=gamma)
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svm_temp.fit(X_circles_train, y_circles_train)
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results[i, j] = svm_temp.score(X_circles_test, y_circles_test)
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# Find best parameters
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best_idx = np.unravel_index(np.argmax(results), results.shape)
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best_C = C_range[best_idx[0]]
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best_gamma = gamma_range[best_idx[1]]
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best_score = results[best_idx]
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fig, ax = plt.subplots(figsize=(8, 6))
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im = ax.imshow(results, cmap='YlOrRd', aspect='auto')
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ax.set_xticks(range(len(gamma_range)))
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ax.set_yticks(range(len(C_range)))
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ax.set_xticklabels([str(g) for g in gamma_range])
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ax.set_yticklabels([str(c) for c in C_range])
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ax.set_xlabel('Gamma')
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ax.set_ylabel('C')
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ax.set_title('Grid Search: Test Accuracy')
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# Annotate cells
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for i in range(len(C_range)):
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for j in range(len(gamma_range)):
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ax.text(j, i, f'{results[i, j]:.2f}', ha='center', va='center',
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color='white' if results[i, j] > 0.8 else 'black')
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plt.colorbar(im, label='Accuracy')
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save_plot('svm_gridsearch.pdf', 'Grid search heatmap for C and gamma hyperparameters.')
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\end{pycode}
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Best hyperparameters: $C = \py{best_C}$, $\gamma = \py{best_gamma}$ with accuracy \py{f"{best_score:.3f}"}.
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\section{Results Summary}
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\begin{table}[H]
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\centering
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\caption{SVM Model Performance}
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\begin{tabular}{lcccc}
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\toprule
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Model & Kernel & Test Accuracy & Support Vectors \\
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\midrule
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Linear Data & Linear & \py{f"{linear_test_acc:.3f}"} & \py{n_sv_linear} \\
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Circles Data & RBF & \py{f"{rbf_test_acc:.3f}"} & \py{n_sv_rbf} \\
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\bottomrule
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\end{tabular}
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\end{table}
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\begin{pycode}
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print(r'\begin{table}[H]')
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print(r'\centering')
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print(r'\caption{Kernel Comparison on Circles Data}')
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print(r'\begin{tabular}{lcc}')
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print(r'\toprule')
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print(r'Kernel & Test Accuracy & Support Vectors \\')
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print(r'\midrule')
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for k, a, s in kernel_results:
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print(f'{k.upper()} & {a:.3f} & {s} \\\\')
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print(r'\bottomrule')
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print(r'\end{tabular}')
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print(r'\end{table}')
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\end{pycode}
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\section{Conclusion}
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This analysis demonstrated:
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\begin{itemize}
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\item Hard and soft margin SVM classification
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\item The kernel trick for nonlinear decision boundaries
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\item Effect of C parameter on margin width and misclassifications
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\item Effect of gamma on RBF kernel flexibility
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\item Kernel selection based on data characteristics
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\item Grid search for hyperparameter optimization
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\end{itemize}
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The RBF kernel with appropriate hyperparameters ($C = \py{best_C}$, $\gamma = \py{best_gamma}$) achieves \py{f"{best_score:.1%}"} accuracy on the nonlinear circles dataset.
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\end{document}
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