Path: blob/main/biology/freebayes/files/patch-SeqLib_bwa_Makefile
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--- SeqLib/bwa/Makefile.orig 2018-03-23 18:47:04 UTC +++ SeqLib/bwa/Makefile @@ -1,8 +1,8 @@ -CC= gcc +CC ?= gcc #CC= clang --analyze -CFLAGS= -g -Wall -Wno-unused-function -O2 +CFLAGS ?= -g -Wall -Wno-unused-function -O2 WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS -AR= ar +AR ?= ar DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC) ## moved is.o bwtiindex.o rope.o to LOBJS LOBJS= utils.o kthread.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o \