Path: blob/main/biology/gatk/files/patch-build.gradle
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--- build.gradle.orig 2020-02-28 18:01:21 UTC
+++ build.gradle
@@ -118,7 +118,7 @@ def resolveLargeResourceStubFiles(largeResourcesFolder
}
// check for stub files, try to pull once if there are any, then check again
- if (checkForLFSStubFiles(largeResourcesFolder)) {
+ if (false && checkForLFSStubFiles(largeResourcesFolder)) {
final gitLFSPullLargeResources = "git lfs pull --include $largeResourcesFolder"
execGitLFSCommand(gitLFSPullLargeResources)
if (checkForLFSStubFiles(largeResourcesFolder)) {
@@ -152,7 +152,7 @@ def ensureBuildPrerequisites(largeResourcesFolder, bui
if (!JavaVersion.current().isJava8() && !JavaVersion.current().isJava11()) {
println("Warning: using Java ${JavaVersion.current()} but only Java 8 and Java 11 have been tested.")
}
- if (!skipGitCheck && !looksLikeWereInAGitRepository() ) {
+ if (false && !skipGitCheck && !looksLikeWereInAGitRepository() ) {
throw new GradleException("This doesn't appear to be a git folder. " +
"The GATK Github repository must be cloned using \"git clone\" to run the build. " +
"\n$buildPrerequisitesMessage")
@@ -166,7 +166,7 @@ final isRelease = Boolean.getBoolean("release")
final versionOverridden = System.getProperty("versionOverride") != null
ensureBuildPrerequisites(largeResourcesFolder, buildPrerequisitesMessage, versionOverridden)
-version = (versionOverridden ? System.getProperty("versionOverride") : gitVersion().replaceAll(".dirty", "")) + (isRelease ? "" : "-SNAPSHOT")
+version = (isRelease ? "1.0" : "1.0" + "-SNAPSHOT").replaceAll(".dirty", "")
if (versionOverridden) {
println "Version number overridden as " + version