PORTNAME= gemma DISTVERSION= 0.98.3 CATEGORIES= biology MAINTAINER= [email protected] COMMENT= Genome-wide Efficient Mixed Model Association LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libgsl.so:math/gsl USES= blaslapack:openblas compiler:c++11-lang eigen:3 gmake \ localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= genetics-statistics GH_PROJECT= GEMMA MAKEFILE= ${FILESDIR}/Makefile # Assuming openblas is built with pthreads, not openmp CXXFLAGS+= -I${LOCALBASE}/include/eigen3 -DOPENBLAS -pthread LDFLAGS+= -lopenblas -pthread OPTIONS_DEFINE= EXAMPLES pre-configure: @${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh do-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) do-test: (cd ${WRKSRC}/test && ${SH} test_suite.sh) .include <bsd.port.mk>
