PORTNAME= atac-seq DISTVERSION= 0.2.0 CATEGORIES= biology python MASTER_SITES= # empty MAINTAINER= [email protected] COMMENT= Metaport for ATAC-Seq analysis WWW= https://github.com/auerlab/ LICENSE= BSD2CLAUSE RUN_DEPENDS= sra-tools>0:biology/sra-tools \ fastq-trim>0:biology/fastq-trim \ fastqc>0:biology/fastqc \ ${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR} \ biolibc-tools>0:biology/biolibc-tools \ bwa>0:biology/bwa \ bowtie2>0:biology/bowtie2 \ samtools>0:biology/samtools \ ${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2@${PY_FLAVOR} \ fasda>0:biology/fasda \ peak-classifier>0:biology/peak-classifier \ webbrowser>0:www/webbrowser \ curl>0:ftp/curl USES= metaport python .include <bsd.port.options.mk> .if ${OPSYS} != FreeBSD RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}MACS3>0:biology/py-macs3@${PY_FLAVOR} .endif .include <bsd.port.mk>
