PORTNAME= bwa DISTVERSIONPREFIX= v DISTVERSION= 0.7.19 CATEGORIES= biology MAINTAINER= [email protected] COMMENT= Burrows-Wheeler sequence aligner WWW= https://bio-bwa.sourceforge.net/ \ https://sourceforge.net/projects/bio-bwa/ \ https://github.com/lh3/bwa/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING # Recheck these after 0.7.18 update BROKEN_mips= fails to compile: cc1: unrecognized command line option "-msse2" BROKEN_mips64= fails to compile: cc1: unrecognized command line option "-msse2" BUILD_DEPENDS= simde>0:devel/simde USES= gmake localbase perl5 shebangfix USE_GITHUB= yes GH_ACCOUNT= lh3 USE_PERL5= run SHEBANG_FILES= qualfa2fq.pl xa2multi.pl PLIST_FILES= bin/bwa bin/qualfa2fq.pl bin/xa2multi.pl share/man/man1/bwa.1.gz do-install: ${INSTALL_PROGRAM} ${WRKSRC}/bwa ${STAGEDIR}${PREFIX}/bin ${INSTALL_SCRIPT} ${WRKSRC}/*.pl ${STAGEDIR}${PREFIX}/bin ${INSTALL_MAN} ${WRKSRC}/*.1 ${STAGEDIR}${PREFIX}/share/man/man1 .include <bsd.port.mk>
