PORTNAME= artemis DISTVERSIONPREFIX= v DISTVERSION= 17.0.1-11 DISTVERSIONSUFFIX= -g3e43d27e CATEGORIES= biology java MAINTAINER= [email protected] COMMENT= DNA sequence viewer and annotation tool WWW= https://www.sanger.ac.uk/science/tools/artemis LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= bash:shells/bash USES= gmake java shebangfix USE_GITHUB= yes GH_ACCOUNT= sanger-pathogens SHEBANG_FILES= act art bamview dnaplotter test/*.sh etc/go_associations.pl ALL_TARGET= jar NO_ARCH= yes PLIST_SUB= PORTVERSION="${PORTVERSION}" post-extract: @cd ${WRKDIR} && ${MV} Artemis-${DISTVERSION}${DISTVERSIONSUFFIX} ${PORTNAME}-${DISTVERSION}${DISTVERSIONSUFFIX} do-install: @${MKDIR} ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION} .for f in jar_build lib etc images artemis_sqlmap @cd ${WRKSRC} && ${COPYTREE_SHARE} ${f} ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION} .endfor @cd ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION} && ${MV} jar_build jars .for f in art act bamview dnaplotter ${INSTALL_SCRIPT} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}/${f} @${REINPLACE_CMD} -i '' -e 's|APPLICATION_HOME=.*|&/jars|' ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}/${f} @(${ECHO} "#!/bin/sh"; ${ECHO} ""; ${ECHO} "cd ${PREFIX}/${PORTNAME}-${PORTVERSION} && ./${f}") > ${STAGEDIR}${PREFIX}/bin/${f} @${CHMOD} +x ${STAGEDIR}${PREFIX}/bin/${f} .endfor .include <bsd.port.mk>
