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oaW5paXlwz549HTaVAJBIJCc8PDwWEUL6bqDt7e0oKCgAx3GYPHmy0Zl1VVVV+OCDD1BSUmIwvHZwcKiRy+XnbKqEezMeM4RCYaHuMFEnBEVAQACCgoLg5+eHtrY21NTUoLq62uRURJ1m8/vs7Ox/21xOKy0tbQEhZBshJGCkT2wt0SanLcnl8spp06ZtFQqFvoSQqCEk8Moppf9DKVVpVy/WCS+To6Ojb4x29bZkQe1kQkhm/+GjEaE8gI/q6+v/un///ju9x3/Mcdwaa5f0UGbxTCWEzAQQB2AmgIcopY2EkLOEkJ8opWfr6+vlWqH9jrW6aDLabcjaogWjLVgul38TExPjY602PeqCrS3aKoIHEy2VSosLCwvvScKegxWRyWS/53neULv966gNHmxEdPmYFawVTSl9BcAVSmk+pfR/wWAwGAwGg8Fg2DbM93AwmO+hCZjvob0IXrZsmadEIrmktSvx8/NDSkoKgoIMrw9y4sQJ5OXl9T1xpJT+Jysra5ktCB6276EhmO8hmO+h1Ri276ExxrzvYX/GrO+hMcas76EpmO+hPfTSg/keGsNWfQ/NevLA83waz/PtwN01qzZv3qw38bQ/xcXFyMzM7JuyRCktzczMzLWbSIv5HjLfQ4PNgPkeakUz30NbLuGhwHwPme+hjQUe90I08z1kMBgMBoPBYDAYDFuC+R6aC/M9ZL6HIw/zPbRl30Nd6uvrkZGRgRMnTqCtrQ3+/v4GF00wWkq27HtoiM2bN6O2thbt7e24evUqjh8/jvb2dvj5+VlkbWRTvoemOHv2LFpaflkfRaPR4Nq1azh+/Dhu3rwJb2/vAev6GMNS30OTgmNjY7dzHDc9Pj4eCxYsGLE26OnpiZKSEr1Hqr09L+rq6vDDDz/g+vXrcHd3N2tpOi8vL7S0tKC2tlYIYIpcLt9pseBVq1b5CQSCj0QiEVm7du2I+hR6eHjg4YcfhkQiQUNDw4AlIQHg5s2bKCgowOXLlyGRSODt7W2y35g8eTKOHTsGnueDIyMjsy22H4qLi1tNCEmKjIwcMdccXUbapEosFqOmpgaNjY2E47haiw2mpFLpekLIlOTkZPj5+eFeMdImVXL53ZWrCgsLdxj8oU10/ZOAgb6HlZWVyMvLM2nZeS9pbW3Fnj17sH//fqSnp+tNhbwnvof5+flWE6uLUqnE/v37B/QNutdukWBjGOpgrIU506fMFmzM93DZsmVmz8S7lzg7Ow+w9L0nvocTJ07Ehg0b7sWwb9iWvub4HpqafnQQwBOFhYUDfA9HkpG09NWZSHDQYsFqtfpzoVD4TklJCadQKIbtb2ZovDuS7pgKhQIlJSWglPJqtfrzIQ0P09LSvuE47sn4+Hg8//zzIya2vr4e7777rsFAQzsamjFjBhITEzFlyhSzvjM3NxcFBQXgef5bmUy2cChVGjzPv0II+XVBQYFjXFycRdP/TZGTk2NQrEAgQGxsLB5//HGzlqLTcvnyZRQUFGh9D18Z8mhpOL6Hpvjxxx/1qrGDgwMSEhKQmpqK+Ph4s0dKgA36HhrC398f1dXVEIvFmD9/PlJTUxETE2OxzS/zPWS+hyxNyxLxFsN8DxkMBoPBYDBGMNJivocGwkLme2gXgpnvoQ7M9xD3ge+hMcas76ExmO+hPsz30GqCme/hIL6HgzGmfQ8NwXwPfzmPffoeDsaY8z00F+Z7yHwPrRh4MN9DE76Hg2GLvocDBg9FRUV1sbGxYgDztNvu3LmDS5cuITg42Kz5FyqVCnv37sWhQ4f6f9Tc2tqaVFpa2mMzgntvJ8z3sF8IynwPh9ChMd9Dq5dwv9Jmvodgvodm/WDM93A02zTzPbQF0cz3cKwINiGa+R4yGAzGfYnZsfTKlSshFArB87zZL3do91Wr1di2bZt9CE5NTQXHcVCpVF5CoXASz/OuHMc5mSlYyXFcu1qtviYSiZp4nkd2drZtCta67lBKH+I4bp+pt67NTAZc43n+KULIha6uLmzfvt0qgoUmfghn3H1Lc05ycjKioqLg5eVllvWQLl1dXWhqasL58+cn5efnFwM4BSARwB0A1CZKeOXKlV4CgeBqcHDwuD/96U8ml41pbm7GrVu3EBISMmjb7unpwbvvvouKioo2jUYTsm3btiarC05LSwOA8vDw8MmvvPIKMVVyMpkMly5dgkajwcKFC/H000+bddKMjAx66dKlSgBTZDLZqArWGx4mJSXB1dX1n+7u7oveeOMNg2KrqqrwySefYOfOnX1vZHd1deG5556Dm5ubWSedPXs2OXXqlLtSqRRPmDDhu/Lycqu1YTHHcesMvSt89epV7N27F6WlpXBycoJarYZEIkFUVBSWLVtm0WpJAPD8889j8+bN6wD8A0C3VQT7+vpGANBzu7t48SJkMlnfsyXtG6BLly7tbxFmEdpz9J7znFUEcxznBtyddQcAn376KU6cOGHwZcrPP/8cu3ZZZrBDCEFCQgJWrFjRdw7tOUcLbpB758j2kISM2puoZpUwz/OtAoEAHR0dcHFxQUpKCmJjY/WqtJZnn312WFVa+0o8z/OtoylYr5f28fG5NW7cuDemTZsGLy8vAIC3tzeSkpIQGhqKxsZGNDQ0QCQSoaSkBMeOHcONGzcQFhZmdKkJY5SXl+PMmTOoq6v7Q3l5ucYqgkNCQjQSiURcVlY2r/+CYR4eHpg7dy6ioqJw8+ZN3L59Gz09PaitrcXevXsRHh5u0u2yP++88w7u3Lmzsb29/dBo3pYE/X91qVT6nVKpXF5ZWek2e/bsAfdiNzc3aFdQq62tRVNTEwQCAVxcXBAWFmZ24FFdXV0J4Kndu3fbZ2g5derUQVdCtMnQUrt9+fLlzo6OjgcppXMWLVo0EoMH5OfngxByqqurK3H79u1WGTwYGy1RAJ0A5gJ4aP/+/fu++eabYQ8PATwFwKrmyywBMNZTPAwGg2FXWNJLD+u2ZI2oaqj34RHNS2dnZ9tk4DFmQ8thDx60mZGysjJ4eHiYXE3NFgYPBkftcXFxF2bMmOHzl7/8hZgzsM/Ly8Nnn32GY8eOoaqqCpGRkQZXBhYIBJg7dy6qqqrEt27d+o1cLt9sdcFpaWkm89IGRyBCIY4ePQqhUIgbN27g4MGD+Pnnn+Hr62swV63NS4eFhYnlcvl3VhOclJQkHj9+/MH09PS+FI85eHh4YOHChWhra0NLSwu6urpw+/ZtHDlyBGVlZZgwYcKAbIifnx/Onj07z9vbe5PVUjwJCQnRAoEgfcmSJRYn1gUCAaKiovDEE0/AyckJly9fhkgkwu3bt3H69GkcPnwYgYGB8Pa++yatk5MTDh06BGdn531FRUX1oyXYZF56586dOHr0KHiet1h8/7bf3d2N9957D/PmzUNKSopt5qVVKtU9yU1bE5N56RUrVmDFihUWf+nhw4eRl5ent00sFmPt2rWYMWMGAOvlpfUENzQ0lAQFBaG6utrsDKTuPXbXrl04f/48FAoFhEIhlEolwsLC8MwzzyAkJERvf+3bag0NDSVWE+zr69vN8/zG3NzcdZs2bTL7S6qqqrB+/Xo4OTmBUgqhUIiQkBA888wzePDBBw0ek5ubC57nN/r6+nZbrQ03NDSA47jXWlpaKjIyMsxuvMXFxRCLxSCEICIiAu+//z7+/Oc/GxWbkZFBW1paKjiOe83UItqjElqmpaVBrVZbFFryPI+rV69aHFoKhcKm0Z4BwAYPvYMHCAQCBAcHo6KiYkSHh8HBwRcqKiqg0Wisksk0Z54WFi1ahC+//HJYCYDFixc39ZYwrDlPy+xE/HADBkopWCKewWAwGMPopZOSksSBgYFfAQgDEEApbSWE1PWu0f6fMSU4PT19FiHkR7VaDW9vb7i5uUGpVKKxsRE8z4NS+nFWVtaLY0bwCy+8QAHgd7/7HebOndu3va2tDX//+9/R3d0Nnuf/KJPJMuxJMGekdHdoNBosXrxYTyxw10ly06ZN2uHgOnsrYc5IGDjd2dkZiYmJuHbtGiorK/v+VVRUoKenB8HBwSCETFiyZImDPQk2NovHV+u6k5GRobc0nEajwXPPPYegoCBcvHgR48aNmwvgqF0LJoQ0tre3+wDAv/71rwGfCwQCbNmyBRzHobu7u2AsVOmyjo4OfP/99xCJRAP+qVQqVFZWglJ6UygUdtm94KtXr/5WKBT2ZSF16ezsxBtvvKGt5p/3GjvZdxsOCQlRU0p/TQg5+uGHHyIgIADjx4+HUqlEQ0ODro3uGpFIdBhAvl3fh+fPn4/Q0FAolUoPR0fHLwGEEkK8KaWdAOoopRkcx9VQSvcRQoharU7aunXrf+22SmszFE5OTrc0Gk2Cr6/vhMzMTG7SpEkuYrE4lOO4jwB8TSmdCwBCofBAWlpasr2Hlujq6urLUhJC+p4zUUrBcZzWviueEHKy95b12NatW7+zyxLOysrS+zszM9NgLeA4roAQshhAt0AgeNauR0uD0fvaXl+CT6PRYOvWrfbZhs1B+9RAK9jSFz3sTrCuaAaDwWAwGIxhhZb3dSLew8MDnZ2ddp+INxr8xsbG1gJ3V2NYuXIlfH19kZiYiEceeQQ//PADNBpNXExMzG25XH7GngSbnYh/8803UVVVdX8k4quqqvomf99Xifjdu3ffP4n4l19+GWvXrkVoaOj9kYjXOnr0T8QDsKtEvLE0rTA0NFQFAGvWrEFU1C+Lh3d2dmLDhg1QKBSglH6YlZX18lgQjKlTpz5CCDmqVquNJuIppWpK6W9kMpl9J+J7b03o6uq6fxLxvWnaW7jroTYhMzOTA+ACIBTA2EvEm0NvmnZsJOLNoTdjaVeJ+JFK0+4D4ATgBTYAZTAY95L/ByGe1hbUagy2AAAAAElFTkSuQmCC"},1032:function(e,t){e.exports="data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABQAAAACCAIAAADXZGvcAAAAAXNSR0IArs4c6QAAAAZiS0dEAP8A/wD/oL2nkwAAAAlwSFlzAAALEwAACxMBAJqcGAAAAAd0SU1FB90BFxYkHoGW4MAAAAAZdEVYdENvbW1lbnQAQ3JlYXRlZCB3aXRoIEdJTVBXgQ4XAAAAEklEQVQI12M0NjZmIBcwMVAAAEkmAJ08S5kYAAAAAElFTkSuQmCC"},1033:function(e,t){e.exports="data:image/png;base64,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0===e?"undefined":_typeof(e))?e:{name:e}})).length){i.forEach(function(e){var i=dojoConfig.packages.find(function(t){return t.name===e.name});i?(e.css=!!i.css&&i.pluginDir+"/"+i.css,e.js=i.location):t.fatalError("plugin "+e.name+" not found. You can rebuild JBrowse with a -dev release or github clone with this plugin in the plugin folder")});var n=array.map(i,function(e){return new Deferred});new DeferredList(n).then(function(){e.resolve({success:!0})}),dojo.global.require(array.map(i,function(e){return e.name+"/main"}),dojo.hitch(this,function(){array.forEach(arguments,function(e,t){var r=i[t],o=n[t];if("string"==typeof e)console.error("could not load plugin "+r.name+": "+e);else{var a,s=dojo.mixin(dojo.clone(i[t]),{config:this.config[r.name]||{}});s.browser=this,s=dojo.mixin(s,{browser:this}),r.css?a=this._loadCSS({url:this.resolveUrl(r.css+"/main.css")}):(a=new Deferred).resolve(),a.then(function(){o.resolve({success:!0})}),s.cssLoaded=a,this.plugins[r.name]=new e(s)}},this)}))}else e.resolve({success:!0})})},resolveUrl:function(e){var t=this.config.browserRoot||this.config.baseUrl||"";return Util.resolveUrl(t,e)},welcomeScreen:function(e,t){var i=this;__webpack_require__.e(4).then(function(){var n=[__webpack_require__(1846)];(function(n){e.innerHTML=n,dojo.create("div",{style:{overflow:"hidden"}},i.container),dojo.byId("welcome").innerHTML="Welcome! To get started with <i>JBrowse-"+i.version+"</i>, select a sequence file or an existing data directory",on(dojo.byId("newOpen"),"click",dojo.hitch(i,"openFastaElectron")),on(dojo.byId("newOpenDirectory"),"click",function(){new OpenDirectoryDialog({browser:i,setCallback:dojo.hitch(i,"openDirectoryElectron")}).show()});try{i.loadSessions()}catch(e){console.error(e)}if(t){console.log(t);var r=dojo.byId("fatal_error_list");dojo.create("div",{className:"error",innerHTML:t},r)}request(i.resolveUrl("sample_data/json/volvox/successfully_run")).then(function(){try{document.getElementById("volvox_data_placeholder").innerHTML='The example dataset is also available. View <a href="?data=sample_data/json/volvox">Volvox test data here</a>.'}catch(e){}})}).apply(null,n)}).catch(__webpack_require__.oe)},ensureNonzeroContainerDimensions:function(){var e=this.container.offsetWidth,t=this.container.offsetHeight;e||(console.warn("JBrowse container element #"+this.config.containerID+" has no width, please set one with CSS. Setting fallback width of 640 pixels"),this.container.style.width="640px"),t||(console.warn("JBrowse container element #"+this.config.containerID+" has no height, please set one with CSS. Setting fallback height of 480 pixels"),this.container.style.height="480px")},fatalError:function(e){function t(e){return e&&(e.status&&(e=e.status+" ("+e.statusText+") when attempting to fetch "+e.url),console.error(e.stack||""+e),/\.$/.exec(e+="")||(e+="."),e=dojoxHtmlEntities.encode(e)),e}if(this.renderedFatalErrors){var i=dojo.byId("fatal_error_list")||document.body;dojo.create("div",{className:"error",innerHTML:t(e)+""},i)}else if(/^Could not load reference sequence/.test(e)&&this.config.datasets&&!this.config.datasets._DEFAULT_EXAMPLES)dojo.empty(this.container),new StandaloneDatasetList({datasets:this.config.datasets}).placeAt(this.container);else{var n=this.container||document.body,r=this;dojo.addClass(document.body,this.config.theme||"tundra"),Util.isElectron()?this.welcomeScreen(n,t(e)):__webpack_require__.e(5).then(function(){var i=[__webpack_require__(1847)];(function(i){if(n.innerHTML=i,e){var o=dojo.byId("fatal_error_list");dojo.create("div",{className:"error",innerHTML:t(e)+""},o)}request(r.resolveUrl("sample_data/json/volvox/successfully_run")).then(function(){try{dojo.byId("volvox_data_placeholder").innerHTML='However, it appears you have successfully run <code>./setup.sh</code>, so you can see the <a href="?data=sample_data/json/volvox">Volvox test data here</a>.'}catch(e){}})}).apply(null,i)}).catch(__webpack_require__.oe),this.renderedFatalErrors=!0}},loadSessions:function(){var e=electronRequire("fs"),t=(electronRequire("electron").remote.app,this.config.electronData+"/sessions.json"),i=JSON.parse(e.readFileSync(t,"utf8")),n=dojo.create("table",{id:"previousSessionsTable",style:{overflow:"hidden",width:"90%"}},dojo.byId("previousSessions")),r=this;if(!i.length){var o=dojo.create("tr",{},n);dojo.create("div",{innerHTML:"<ul><li>No sessions yet!</li></ul>"},o)}array.forEach(i,function(o){var a=dojo.create("tr",{},n),s=window.location.href.split("?")[0]+"?data="+Util.replacePath(o.session);dojo.create("div",{class:"dijitIconDelete",onclick:function(a){if(confirm("This will simply delete your session from the list, it won't remove any data files. Are you sure you want to continue?")){dojo.empty(n);var s=i.indexOf(o);-1!=s&&i.splice(s,1),e.writeFileSync(t,JSON.stringify(i,null,2),"utf8"),r.loadSessions()}}},a),dojo.create("td",{innerHTML:'<a href="'+s+'">'+o.session+"</a>"},a)})},loadRefSeqs:function(){var e=this;return this._milestoneFunction("loadRefSeqs",function(t){"string"==typeof this.config.refSeqs&&(this.config.refSeqs={url:this.config.refSeqs}),this.config.refSeqs.url&&this.config.refSeqs.url.match(/.fai$/)?new IndexedFasta({browser:this,faiUrlTemplate:this.config.refSeqs.url}).getRefSeqs(function(i){e.addRefseqs(i),t.resolve({success:!0})},function(e){t.reject(e)}):this.config.refSeqs.url&&this.config.refSeqs.url.match(/.2bit$/)?new TwoBit({browser:this,urlTemplate:this.config.refSeqs.url}).getRefSeqs(function(i){e.addRefseqs(i),t.resolve({success:!0})},function(e){t.reject(e)}):this.config.refSeqs.url&&this.config.refSeqs.url.match(/.fa$/)?new UnindexedFasta({browser:this,urlTemplate:this.config.refSeqs.url}).getRefSeqs(function(i){e.addRefseqs(i),t.resolve({success:!0})},function(e){t.reject(e)}):this.config.refSeqs.url&&this.config.refSeqs.url.match(/.sizes/)?new ChromSizes({browser:this,urlTemplate:this.config.refSeqs.url}).getRefSeqs(function(i){e.addRefseqs(i),t.resolve({success:!0})},function(e){t.reject(e)}):"data"in this.config.refSeqs?(this.addRefseqs(this.config.refSeqs.data),t.resolve({success:!0})):request(this.resolveUrl(this.config.refSeqs.url),{handleAs:"text",headers:{"X-Requested-With":null}}).then(function(i){e.addRefseqs(dojo.fromJson(i)),t.resolve({success:!0})},function(e){t.reject("Could not load reference sequence definitions. "+e)})})},loadUserCSS:function(){return this._milestoneFunction("loadUserCSS",function(e){this.config.css&&!lang.isArray(this.config.css)&&(this.config.css=[this.config.css]);var t=this.config.css||[];if(t.length){var i=this,n=array.map(t,function(e){return i._loadCSS(e)});new DeferredList(n).then(function(){e.resolve({success:!0})})}else e.resolve({success:!0})})},_loadCSS:function(e){var t=new Deferred;return"string"==typeof e&&(e.indexOf("{")>-1?(dojo.create("style",{"data-from":"JBrowse Config",type:"text/css",innerHTML:e},document.head),t.resolve(!0)):e={url:e}),"object"==(void 0===e?"undefined":_typeof(e))&&LazyLoad.css(e.url,function(){t.resolve(!0)}),t},loadNames:function(){return this._milestoneFunction("loadNames",function(e){var t,i=dojo.mixin(dojo.clone(this.config.names||{}),this.config.autocomplete||{});if(i.url||(i.url=this.config.nameUrl||"data/names/"),i.baseUrl&&(i.url=Util.resolveUrl(i.baseUrl,i.url)),t=i.type){var n=this;-1==t.indexOf("/")&&(t="JBrowse/Store/Names/"+t),dojo.global.require([t],function(t){n.nameStore=new t(dojo.mixin({browser:n},i)),e.resolve({success:!0})})}else this.nameStore=new DojoDataStore({store:new NamesLazyTrieDojoDataStore({browser:this,namesTrie:new LazyTrie(i.url,"lazy-{Chunk}.json"),stopPrefixes:i.stopPrefixes,resultLimit:i.resultLimit||15,tooManyMatchesMessage:i.tooManyMatchesMessage})}),e.resolve({success:!0})})},compareReferenceNames:function(e,t){return this.regularizeReferenceName(e).localeCompare(this.regularizeReferenceName(t))},regularizeLocation:function(e){var t=this.findReferenceSequence(e.ref||e.objectName);return t&&(e.ref=t.name),e},regularizeReferenceName:function(e){return this.config.exactReferenceSequenceNames?e:(e=e.toLowerCase()).match(/^chrm/)?"chrm":e=e.replace(/^chro?m?(osome)?/,"chr").replace(/^co?n?ti?g/,"ctg").replace(/^scaff?o?l?d?/,"scaffold").replace(/^([a-z]*)0+/,"$1").replace(/^(\d+|x|y)$/,"chr$1").replace(/^(x?)(ix|iv|v?i{0,3})$/,"chr$1$2").replace(/^mt?$/,"chrm")},initView:function(){var e=this;return this._milestoneFunction("initView",function(t){var i=this;dojo.addClass(this.container,"jbrowse"),dojo.addClass(document.body,this.config.theme||"tundra");var n=dojo.create("div",{style:{overflow:"hidden"}},this.container),r=this.browserMeta(),o=new InfoDialog({title:"About "+r.title,content:r.description,className:"about-dialog"}),a=dojo.create("div",{className:this.config.show_nav?"menuBar":"topLink"});e.menuBar=a,this.config.show_menu&&(this.config.show_nav?n:this.container).appendChild(a);var s=dojo.create("div",{className:"overview",id:"overview"},n);function l(){new HelpDialog(lang.mixin(e.config.quickHelp||{},{browser:e})).show()}if(this.overviewDiv=s,this.config.show_overview||(s.style.cssText="display: none"),Util.isElectron()&&!this.config.hideGenomeOptions?(this.addGlobalMenuItem(this.config.classicMenu?"file":"dataset",new dijitMenuItem({id:"menubar_dataset_file",label:"Open sequence file",iconClass:"dijitIconFolderOpen",onClick:dojo.hitch(this,"openFastaElectron")})),this.addGlobalMenuItem(this.config.classicMenu?"file":"dataset",new dijitMenuItem({id:"menubar_dataset_directory",label:"Open data directory",iconClass:"dijitIconFolderOpen",onClick:function(){new OpenDirectoryDialog({browser:e,setCallback:dojo.hitch(e,"openDirectoryElectron")}).show()}})),this.addGlobalMenuItem(this.config.classicMenu?"file":"dataset",new dijitMenuItem({id:"menubar_dataset_save",label:"Save session",iconClass:"dijitIconSave",onClick:dojo.hitch(this,"saveData")})),this.addGlobalMenuItem(this.config.classicMenu?"file":"dataset",new dijitMenuItem({id:"menubar_dataset_home",label:"Return to main menu",iconClass:"dijitIconTask",onClick:dojo.hitch(this,function(){var t=e.container||document.body;e.welcomeScreen(t)})}))):this.config.hideGenomeOptions||this.addGlobalMenuItem(this.config.classicMenu?"file":"dataset",new dijitMenuItem({id:"menubar_dataset_open",label:"Open sequence file",iconClass:"dijitIconFolderOpen",onClick:dojo.hitch(this,"openFasta")})),this.config.show_nav&&(this.navbox=this.createNavBox(n),this.config.classicMenu?(this.config.datasets&&!this.config.dataset_id&&console.warn("In JBrowse configuration, datasets specified, but dataset_id not set.  Dataset selector will not be shown."),this.config.datasets&&this.config.dataset_id?this.renderDatasetSelect(a):(this.poweredByLink=dojo.create("a",{className:"powered_by",innerHTML:this.browserMeta().title,title:"powered by JBrowse"},a),e.poweredBy_clickHandle=dojo.connect(this.poweredByLink,"onclick",dojo.hitch(o,"show")))):this.renderDatasetSelect(a),this.addGlobalMenuItem("file",new dijitMenuItem({id:"menubar_fileopen",label:"Open track file or URL",iconClass:"dijitIconFolderOpen",onClick:dojo.hitch(this,"openFileDialog")})),this.addGlobalMenuItem("file",new dijitMenuSeparator),this.fileDialog=new FileDialog({browser:this}),this.addGlobalMenuItem("file",new dijitMenuItem({id:"menubar_combotrack",label:"Add combination track",iconClass:"dijitIconSample",onClick:dojo.hitch(this,"createCombinationTrack")})),this.renderGlobalMenu("file",{text:this.config.classicMenu?"File":"Track"},a),this.addGlobalMenuItem("view",new dijitMenuItem({id:"menubar_sethighlight",label:"Set highlight",iconClass:"dijitIconFilter",onClick:function(){new SetHighlightDialog({browser:e,setCallback:dojo.hitch(e,"setHighlightAndRedraw")}).show()}})),this._highlightClearButton=new dijitMenuItem({id:"menubar_clearhighlight",label:"Clear highlight",iconClass:"dijitIconFilter",onClick:dojo.hitch(this,function(){var e=this.getHighlight();e&&(this.clearHighlight(),this.view.redrawRegion(e))})}),this._updateHighlightClearButton(),this.subscribe("/jbrowse/v1/n/globalHighlightChanged",dojo.hitch(this,"_updateHighlightClearButton")),this.addGlobalMenuItem("view",this._highlightClearButton),this.addGlobalMenuItem("view",new dijitMenuItem({label:"Resize quant. tracks",id:"menubar_settrackheight",title:"Set all visible quantitative tracks to a new height",iconClass:"jbrowseIconVerticalResize",onClick:function(){new SetTrackHeightDialog({setCallback:function(t){var i=e.view.visibleTracks();array.forEach(i,function(e){/\b(XYPlot|Density)/.test(e.config.type)&&(e.trackHeightChanged=!0,e.updateUserStyles({height:t}))})}}).show()}})),this.config.disableSearch||this.addGlobalMenuItem("view",new dijitMenuItem({label:"Search features",id:"menubar_search",title:"Search for features",onClick:function(){var e=dojo.mixin(dojo.clone(i.config.names||{}),i.config.autocomplete||{}),t=e.dialog||"JBrowse/View/Dialog/Search";dojo.global.require([t],function(t){new t(dojo.mixin({browser:i},e)).show()})}})),this.renderGlobalMenu("view",{text:"View"},a),this.renderGlobalMenu("options",{text:"Options",title:"configure JBrowse"},a)),this.config.show_nav&&(this.addGlobalMenuItem("help",new dijitMenuItem({id:"menubar_about",label:"About",onClick:dojo.hitch(o,"show")})),this.setGlobalKeyboardShortcut("?",l),this.addGlobalMenuItem("help",new dijitMenuItem({id:"menubar_generalhelp",label:"General",iconClass:"jbrowseIconHelp",onClick:l})),this.renderGlobalMenu("help",{},a),!this.config.classicMenu)){var c=lang.getObject("config.datasets."+this.config.dataset_id+".name",!1,this);this.menuBarDatasetName=dojo.create("div",{className:"dataset-name",innerHTML:c,title:"name of current dataset",style:{display:c?"inline-block":"none"}},a)}if(this.config.show_nav&&this.config.show_tracklist&&this.config.show_overview&&!Util.isElectron()){var h=this.makeShareLink();h&&a.appendChild(h)}else if(Util.isElectron()){var u=this.makeSnapLink();u&&a.appendChild(u)}else this.config.show_fullviewlink&&a.appendChild(this.makeFullViewLink());function d(){var t=e.makeCurrentViewURL();e.config.updateBrowserURL&&window.history&&window.history.replaceState&&window.history.replaceState({},"",t),e.config.update_browser_title&&(document.title=e.browserMeta().title+" "+e.view.visibleRegionLocString())}this.viewElem=document.createElement("div"),this.viewElem.className="dragWindow",this.container.appendChild(this.viewElem),this.containerWidget=new dijitBorderContainer({liveSplitters:!1,design:"sidebar",gutters:!1},this.container),new dijitContentPane({region:"top"},n),this.view=this.viewElem.view=new GenomeView({browser:this,elem:this.viewElem,config:this.config.view,stripeWidth:250,refSeq:this.refSeq}),dojo.connect(this.view,"onFineMove",this,"onFineMove"),dojo.connect(this.view,"onCoarseMove",this,"onCoarseMove"),this.browserWidget=new dijitContentPane({region:"center"},this.viewElem),dojo.connect(this.browserWidget,"resize",this,"onResize"),dojo.connect(this.browserWidget,"resize",this.view,"onResize"),dojo.connect(this,"onCoarseMove",d),this.subscribe("/jbrowse/v1/n/tracks/visibleChanged",d),this.subscribe("/jbrowse/v1/n/globalHighlightChanged",d),this.afterMilestone("loadRefSeqs",dojo.hitch(this,function(){this.afterMilestone("initTrackMetadata",dojo.hitch(this,function(){this.createTrackList().then(dojo.hitch(this,function(){this.containerWidget.startup(),this.onResize(),on(document.body,"keypress",dojo.hitch(this,"globalKeyHandler")),this._initEventRouting(),t.resolve({success:!0})}))}))}))})},createCombinationTrack:function(){void 0===this._combinationTrackCount&&(this._combinationTrackCount=0);var e=new Deferred,t={browser:this,refSeq:this.refSeq,type:"JBrowse/Store/SeqFeature/Combination"},i=this.addStoreConfig(void 0,t);t.name=i,this.getStore(i,function(t){e.resolve(!0)});var n=this;e.promise.then(function(){var e={type:"JBrowse/View/Track/Combination",label:"combination_track"+n._combinationTrackCount++,key:"Combination Track "+n._combinationTrackCount,metadata:{Description:"Drag-and-drop interface that creates a track out of combinations of other tracks."},store:i};n.publish("/jbrowse/v1/v/tracks/new",[e]),n.publish("/jbrowse/v1/v/tracks/show",[e])})},renderDatasetSelect:function(e){var t=this;if(this.config.classicMenu){var i=this.config.datasets||{},n=[];for(var r in i)/^_/.test(r)||n.push(Object.assign({id:r},i[r]));var o=new dijitComboBox({name:"dataset",className:"dataset_select",value:this.config.datasets[this.config.dataset_id].name,store:new dojoMemoryStore({data:n}),onChange:function(e){if(!e)return!1;var i=n.find(function(t){return t.name===e}).id,r=(t.config.datasets||{})[i],o=t.config;return r&&(o.datasetLinkToParentIframe?window.parent.location=r.url:window.location=r.url),!1}});o.placeAt(e),o.focusNode.onclick=function(){this.select()},this.config.datasetSelectorWidth&&(o.domNode.style.width=this.config.datasetSelectorWidth,o.focusNode.style.width=this.config.datasetSelectorWidth)}else{var a;!function(){var i=t.config;if(t.config.datasets&&t.config.dataset_id)for(r in t.addGlobalMenuItem("dataset",new dijitMenuSeparator),t.config.datasets)/^_/.test(r)||(a=t.config.datasets[r],t.addGlobalMenuItem("dataset",new dijitMenuItem({id:"menubar_dataset_bookmark_"+r,label:r==t.config.dataset_id?"<b>"+a.name+"</b>":a.name,iconClass:"dijitIconBookmark",onClick:dojo.hitch(a,function(){i.datasetLinkToParentIframe?window.parent.location=this.url:window.location=this.url})})));t.renderGlobalMenu("dataset",{text:"Genome"},e)}()}},saveSessionDir:function(e){var t=electronRequire("fs"),i=this.config.electronData+"/sessions.json",n=[];try{n=JSON.parse(t.readFileSync(i,"utf8"))}catch(e){console.error(e)}var r=Util.replacePath(e);array.every(n,function(e){return e.session!=r})&&n.push({session:r}),t.writeFileSync(i,JSON.stringify(n,null,2),"utf8")},openDirectoryElectron:function(e){this.saveSessionDir(e),window.location="?data="+Util.replacePath(e)},openConfig:function(e){if(confirm("If you have opened any new tracks, please save them before continuing. Are you sure you want to continue?")){var t=electronRequire("fs"),i=this.config.dataRoot,n=JSON.parse(t.readFileSync(i+"/trackList.json","utf8"));if(n.plugins=n.plugins||{},lang.isArray(n.plugins)){var r={};array.forEach(n.plugins,function(e){r[e]={name:e,location:i+"/"+e}}),n.plugins=r}array.forEach(e,function(e){var t=e.match(/\/(\w+)$/)[1];n.plugins[t]={location:e,name:t}});try{t.writeFileSync(i+"/trackList.json",JSON.stringify(n,null,2))}catch(e){console.error("Failed to save trackList.json",e)}window.location.reload()}},saveData:function(){if(confirm("This will overwrite tracks and config data in your data directory. Are you sure you want to continue?")){var e=electronRequire("fs"),t=this.config.dataRoot,i=array.map(this.config.tracks,function(e){var t=lang.clone(e);return this.getStore(t.store,lang.hitch(this,function(e){t.storeClass=e.config.type,t.urlTemplate||(lang.mixin(t,e.saveStore()),t.histograms&&t.histograms.store&&this.getStore(t.histograms.store,function(e){lang.mixin(t.histograms,e.saveStore())})),delete t.store})),t},this),n=(array.filter(Util.uniq(this.config.plugins),function(e){return"RegexSequenceSearch"!=e}),{});lang.isArray(this.config.plugins)?array.forEach(this.config.plugins,function(e){n[e]="object"==(void 0===e?"undefined":_typeof(e))?e:{name:e}}):n=this.config.plugins;var r={tracks:i,refSeqs:this.config.refSeqs,refSeqOrder:this.config.refSeqOrder,plugins:n};try{e.writeFileSync(Util.unReplacePath(t)+"/trackList.json",JSON.stringify(r,null,2))}catch(e){alert("Unable to save track data"),console.error(e)}}},openFastaElectron:function(){this.fastaFileDialog=this.fastaFileDialog||new FastaFileDialog({browser:this}),electronRequire("electron").remote.app;var e=electronRequire("fs");electronRequire("path"),this.fastaFileDialog.show({openCallback:dojo.hitch(this,function(t){var i=t.trackConfs||[];if(i.length){var n={tracks:[{label:i[0].label,key:i[0].key,type:"SequenceTrack",category:"Reference sequence",useAsRefSeqStore:!0,chunkSize:2e4}],refSeqs:o,refSeqOrder:t.refSeqOrder};if(i[0].store.bgzfa&&i[0].store.fai&&i[0].store.gzi){var r=Util.replacePath(i[0].store.bgzfa.url),o=Util.replacePath(i[0].store.fai.url),a=Util.replacePath(i[0].store.gzi.url);n.tracks[0].storeClass="JBrowse/Store/SeqFeature/BgzipIndexedFasta",n.tracks[0].urlTemplate=r,n.tracks[0].faiUrlTemplate=o,n.tracks[0].gziUrlTemplate=a,n.refSeqs=o}else if(i[0].store.fasta&&i[0].store.fai)r=Util.replacePath(i[0].store.fasta.url),o=Util.replacePath(i[0].store.fai.url),n.tracks[0].storeClass="JBrowse/Store/SeqFeature/IndexedFasta",n.tracks[0].urlTemplate=r,n.tracks[0].faiUrlTemplate=o,n.refSeqs=o;else if("JBrowse/Store/SeqFeature/TwoBit"==i[0].store.type){var s=Util.replacePath(i[0].store.blob.url);n.tracks[0].storeClass="JBrowse/Store/SeqFeature/TwoBit",n.tracks[0].urlTemplate=s,n.refSeqs=s}else if("JBrowse/Store/SeqFeature/ChromSizes"==i[0].store.type){var l=Util.replacePath(i[0].store.blob.url);delete n.tracks,n.refSeqs=l}else{r=Util.replacePath(i[0].store.fasta.url);try{if(e.statSync(r).size>1e8)return void alert("Unindexed file too large. You must have an index file (.fai) for sequence files larger than 100 MB.")}catch(e){console.error(e)}n.tracks[0].storeClass="JBrowse/Store/SeqFeature/UnindexedFasta",n.tracks[0].urlTemplate=r,n.refSeqs=r}var c=this.config.electronData;e.existsSync(c)||e.mkdirSync(c),c+="/"+i[0].label;try{e.existsSync(c)||e.mkdirSync(c),e.writeFileSync(c+"/trackList.json",JSON.stringify(n,null,2)),e.closeSync(e.openSync(c+"/tracks.conf","w")),this.saveSessionDir(c),window.location=window.location.href.split("?")[0]+"?data="+Util.replacePath(c)}catch(e){alert("Failed to save session"),console.error(e)}}})})},openFasta:function(){var e=this;this.fastaFileDialog=this.fastaFileDialog||new FastaFileDialog({browser:this}),this.fastaFileDialog.show({openCallback:function(t){return new Promise(function(i,n){var r=t.trackConfs||[],o=_slicedToArray(r,1)[0];if(!o)return n("no track configs");var a=o.store;if(!a)return n("no store config");dojo.global.require([a.type],function(r){if(/\/Unindexed/i.test(a.type)&&a.fasta&&a.fasta.size>1e8)return alert("Unindexed file too large. You must have an index file (.fai) for sequence files larger than 100 MB."),n("sequence file too large");new r(Object.assign({browser:e},a)).getRefSeqs(function(n){e.teardown();var r=new e.constructor({refSeqs:{data:n},refSeqOrder:t.refSeqOrder,dataRoot:null});r.afterMilestone("completely initialized",function(){a.name="refseqs",r.addStoreConfig(a.name,a),o.store="refseqs","JBrowse/Store/SeqFeature/ChromSizes"!==a.type&&r.publish("/jbrowse/v1/v/tracks/new",[o])}),i()},function(t){e.fatalError("Error getting refSeq: "+t),n(t)})})})}})},browserMeta:function(){var e=this.config.aboutThisBrowser||{};e.title=e.title||"JBrowse";var t=this.version;return e.description?e.description+='<div class="powered_by">Powered by <a target="_blank" href="http://jbrowse.org">JBrowse '+t+"</a>.</div>":e.description='<div class="default_about">  <img class="logo" src="'+this.resolveUrl("img/JBrowseLogo_small.png")+'">  <h1>JBrowse '+t+'</h1>  <div class="tagline">A next-generation genome browser<br> built with JavaScript and HTML5.</div>  <a class="mainsite" target="_blank" href="http://jbrowse.org">JBrowse website</a>  <div class="gmod">JBrowse is a <a target="_blank" href="http://gmod.org">GMOD</a> project.</div>  <div class="copyright">'+_package2.default.copyright+"</div>"+(Object.keys(this.plugins).length>1&&!this.config.noPluginsForAboutBox?'  <div class="loaded-plugins">Loaded plugins<ul class="plugins-list">'+array.map(Object.keys(this.plugins),function(e){var t=this.plugins[e];return"<li>"+(t.url?'<a href="'+t.url+'">':"")+t.name+(t.url?"</a>":"")+(t.author?" ("+t.author+")":"")+"</li>"},this).join("")+"  </ul></div>":"")+"</div>",e},registerTrackType:function(e){var t=this.getTrackTypes(),i=e.type,n=e.defaultForStoreTypes||[];e.label,t.knownTrackTypes.push(i),e.label&&(t.trackTypeLabels[i]=e.label);var r={};t.knownTrackTypes=array.filter(t.knownTrackTypes,function(e){var t=r[e];return r[e]=!0,!t}),array.forEach(n,function(e){t.trackTypeDefaults[e]=i}),this._knownTrackTypes=t},getTrackTypes:function(){return this._knownTrackTypes||(this._knownTrackTypes={trackTypeDefaults:{"JBrowse/Store/SeqFeature/BAM":"JBrowse/View/Track/Alignments2","JBrowse/Store/SeqFeature/CRAM":"JBrowse/View/Track/Alignments2","JBrowse/Store/SeqFeature/NCList":"JBrowse/View/Track/CanvasFeatures","JBrowse/Store/SeqFeature/BigWig":"JBrowse/View/Track/Wiggle/XYPlot","JBrowse/Store/SeqFeature/VCFTabix":"JBrowse/View/Track/CanvasVariants","JBrowse/Store/SeqFeature/VCFTribble":"JBrowse/View/Track/CanvasVariants","JBrowse/Store/SeqFeature/GFF3":"JBrowse/View/Track/CanvasFeatures","JBrowse/Store/SeqFeature/BigBed":"JBrowse/View/Track/CanvasFeatures","JBrowse/Store/SeqFeature/GFF3Tabix":"JBrowse/View/Track/CanvasFeatures","JBrowse/Store/SeqFeature/BED":"JBrowse/View/Track/CanvasFeatures","JBrowse/Store/SeqFeature/BEDTabix":"JBrowse/View/Track/CanvasFeatures","JBrowse/Store/SeqFeature/GTF":"JBrowse/View/Track/CanvasFeatures","JBrowse/Store/SeqFeature/StaticChunked":"JBrowse/View/Track/Sequence","JBrowse/Store/SeqFeature/UnindexedFasta":"JBrowse/View/Track/Sequence","JBrowse/Store/SeqFeature/IndexedFasta":"JBrowse/View/Track/Sequence","JBrowse/Store/SeqFeature/BgzipIndexedFasta":"JBrowse/View/Track/Sequence","JBrowse/Store/SeqFeature/TwoBit":"JBrowse/View/Track/Sequence"},knownTrackTypes:["JBrowse/View/Track/Alignments","JBrowse/View/Track/Alignments2","JBrowse/View/Track/FeatureCoverage","JBrowse/View/Track/SNPCoverage","JBrowse/View/Track/HTMLFeatures","JBrowse/View/Track/CanvasFeatures","JBrowse/View/Track/HTMLVariants","JBrowse/View/Track/CanvasVariants","JBrowse/View/Track/Wiggle/XYPlot","JBrowse/View/Track/Wiggle/Density","JBrowse/View/Track/Sequence"],trackTypeLabels:{}}),this._knownTrackTypes},openFileDialog:function(){this.fileDialog.show({openCallback:dojo.hitch(this,function(e){var t=e.trackConfs||[];t.length&&(array.forEach(t,function(e){var t=e.store;if(t&&"object"==(void 0===t?"undefined":_typeof(t))){delete e.store;var i=this.addStoreConfig(t.name,t);e.store=i}(t=e.histograms&&e.histograms.store)&&"object"==(void 0===t?"undefined":_typeof(t))&&(delete e.histograms.store,i=this.addStoreConfig(t.name,t),e.histograms.store=i)},this),this.publish("/jbrowse/v1/v/tracks/new",t),"openImmediately"==e.trackDisposition&&this.publish("/jbrowse/v1/v/tracks/show",t))})})},addTracks:function(e){this._addTrackConfigs(e)},replaceTracks:function(e){this._replaceTrackConfigs(e)},deleteTracks:function(e){this._deleteTrackConfigs(e)},renderGlobalMenu:function(e,t,i){this.afterMilestone("initView",function(){var n=this.makeGlobalMenu(e);if(n){t=dojo.mixin({className:e,innerHTML:'<span class="icon"></span> '+(t.text||Util.ucFirst(e)),dropDown:n,id:"dropdownbutton_"+e},t||{});var r=new dijitDropDownButton(t);dojo.addClass(r.domNode,"menu"),i.appendChild(r.domNode)}},this)},makeGlobalMenu:function(e){var t=(this._globalMenuItems||{})[e]||[];if(!t.length)return null;var i=new dijitDropDownMenu({id:"dropdownmenu_"+e,leftClickToOpen:!0});return dojo.forEach(t,function(e){i.addChild(e)}),dojo.addClass(i.domNode,"jbrowse globalMenu"),dojo.addClass(i.domNode,e),i.startup(),i},addGlobalMenuItem:function(e,t){this._globalMenuItems||(this._globalMenuItems={}),this._globalMenuItems[e]||(this._globalMenuItems[e]=[]),this._globalMenuItems[e].push(t)},_initEventRouting:function(){var e=this;e.subscribe("/jbrowse/v1/v/store/new",function(t){array.forEach(t,function(t){var i=(t=lang.mixin({},t)).name;delete t.name,e.addStoreConfig(i,t)})}),e.subscribe("/jbrowse/v1/v/tracks/hide",function(t){e.publish("/jbrowse/v1/c/tracks/hide",t)}),e.subscribe("/jbrowse/v1/v/tracks/show",function(t){e.addRecentlyUsedTracks(dojo.map(t,function(e){return e.label})),e.publish("/jbrowse/v1/c/tracks/show",t)}),e.subscribe("/jbrowse/v1/v/tracks/new",function(t){e.addTracks(t),e.publish("/jbrowse/v1/c/tracks/new",t),e.publish("/jbrowse/v1/n/tracks/new",t)}),e.subscribe("/jbrowse/v1/v/tracks/replace",function(t){e.replaceTracks(t),e.publish("/jbrowse/v1/c/tracks/replace",t),e.publish("/jbrowse/v1/n/tracks/replace",t)}),e.subscribe("/jbrowse/v1/v/tracks/delete",function(t){e.deleteTracks(t),e.publish("/jbrowse/v1/c/tracks/delete",t),e.publish("/jbrowse/v1/n/tracks/delete",t)}),e.subscribe("/jbrowse/v1/v/tracks/pin",function(t){e.publish("/jbrowse/v1/c/tracks/pin",t),e.publish("/jbrowse/v1/n/tracks/pin",t)}),e.subscribe("/jbrowse/v1/v/tracks/unpin",function(t){e.publish("/jbrowse/v1/c/tracks/unpin",t),e.publish("/jbrowse/v1/n/tracks/unpin",t)})},reportUsageStats:function(){if(!this.config.suppressUsageStatistics){var e=this._calculateClientStats();this._reportGoogleUsageStats(e),this._reportCustomUsageStats(e)}},_reportGoogleUsageStats:function(e){var t=["UA-7115575-2"];if(this.config.googleAnalytics){var i=this.config.googleAnalytics.accounts;t&&!lang.isArray(i)&&(i=i.replace(/^\s*|\s*$/,"").split(/\s*,\s*/)),t.push.apply(t,i)}var n="(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ ";n+="(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), ",n+="m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) ",n+="})(window,document,'script','https://www.google-analytics.com/analytics.js','ga');",t.forEach(function(e,t){n+="UA-7115575-2"==e?"ga('create', '"+e+"', 'auto', 'jbrowseTracker');":"ga('create', '"+e+"', 'auto', 'customTracker"+t+"');"}),t.forEach(function(t,i){if("UA-7115575-2"==t){var r={};"tracks-count refSeqs-count refSeqs-avgLen ver loadTime electron plugins".split(/\s+/).forEach(function(t,i){r["dimension"+(i+1)]=e[t]}),r.metric1=Math.round(1e3*e.loadTime),n+="ga('jbrowseTracker.send', 'pageview',"+JSON.stringify(r)+");"}else n+="ga('customTracker"+i+".send', 'pageview');"});var r=document.createElement("script");r.innerHTML=n,document.getElementsByTagName("head")[0].appendChild(r)},_reportCustomUsageStats:function(e){var t="https";void 0!==this.config.clientReport&&void 0!==this.config.clientReport.protocol&&(t=this.config.clientReport.protocol);var i=t+"://jbrowse.org/analytics/clientReport?"+dojo.objectToQuery(e);dojo.create("img",{style:{display:"none"},src:i},document.body)},getStore:function(e,t){if(!t)throw"invalid arguments";var i=this._storeCache||{};this._storeCache=i;var n=i[e];if(n)return n.refCount++,void t(n.store);var r=this.config.stores[e];if(!r)return console.warn("store '"+e+"' not found"),void t(null);var o=r.type;if(!o)return console.warn("store "+e+" has no type defined"),void t(null);dojo.global.require([o],dojo.hitch(this,function(i){var n={};dojo.mixin(n,r),dojo.mixin(n,{config:r,browser:this,refSeq:this.refSeq});var o=new i(n);(void 0===n.storeCache||!1!==n.storeCache)&&(this._storeCache[e]={refCount:1,store:o}),t(o),t=void 0}))},uniqCounter:0,addStoreConfig:function(e,t){if(e=e||"addStore"+this.uniqCounter++,this.config.stores||(this.config.stores={}),this._storeCache||(this._storeCache={}),this.config.stores[e]||this._storeCache[e])throw"store "+e+" already exists!";return this.config.stores[e]=t,e},clearStores:function(){this._storeCache={}},releaseStore:function(e){var t=this._storeCache[e];t&&!--t.refCount&&delete this._storeCache[e]},_calculateClientStats:function(){var e=screen||window.screen,t=new Date,i={ver:this.version||"dev","refSeqs-count":this.refSeqOrder.length,"refSeqs-avgLen":this.refSeqOrder.length?dojof.reduce(dojo.map(this.refSeqOrder,function(e){var t=this.allRefs[e];return t?t.end-t.start:0},this),"+"):null,"tracks-count":this.config.tracks.length,plugins:dojof.keys(this.plugins).sort().join(","),"scn-h":e?e.height:null,"scn-w":e?e.width:null,"win-h":document.body.offsetHeight,"win-w":document.body.offsetWidth,"el-h":this.container.offsetHeight,"el-w":this.container.offsetWidth,t:t.getTime()/1e3,electron:Util.isElectron(),tzoffset:t.getTimezoneOffset(),loadTime:(t.getTime()-this.startTime)/1e3};return dojo.forEach(this.config.tracks,function(e){var t="track-types-"+e.type||!1;i[t]=(i[t]||0)+1}),i},publish:function(){return this.config.logMessages&&console.log(arguments),topic.publish.apply(topic,arguments)},subscribe:function(){this._uniqueSubscriptionId=this._uniqueSubscriptionId||0,this._subscription=this._subscription||{};var e=++this._uniqueSubscriptionId,t=topic.subscribe.apply(topic,arguments),i=this;return this._subscription[e]=t,function(e){return{remove:function(){delete i._subscription[e],t.remove()}}}(e)},onResize:function(){this.navbox&&(this.view.locationTrapHeight=dojo.marginBox(this.navbox).h)},getRecentlyUsedTracks:function(){return dojo.fromJson(this.cookie("recentTracks")||"[]")},addRecentlyUsedTracks:function(e){var t=Util.uniq(dojo.map(e,function(e){return{label:e,time:Math.round(new Date/1e3)}},this).concat(dojo.fromJson(this.cookie("recentTracks"))||[]),function(e){return e.label}).slice(0,this.config.maxRecentTracks||10);return this.cookie("recentTracks",t,{expires:365}),t},_milestoneFunction:function(e,t){var i=Array.prototype.slice.call(arguments,2),n=this._getDeferred(e);i.unshift(n);try{t.apply(this,i)}catch(e){console.error(e,e.stack),n.reject(e)}return n},_getDeferred:function(e){return this._deferred||(this._deferred={}),this._deferred[e]||(this._deferred[e]=function(){var e=new Deferred;return e.then(null,lang.hitch(this,"fatalError")),e}.call(this))},afterMilestone:function(e,t,i){return this._getDeferred(e).then(function(){try{t.call(i||this)}catch(e){console.error(e instanceof Error?e:String(e),e.stack)}})},passMilestone:function(e,t){return this._getDeferred(e).resolve(t)},reachedMilestone:function(e){return this._getDeferred(e).isResolved()},loadConfig:function(){return this._milestoneFunction("loadConfig",function(e){if(this.config.dataRoot&&"data"!==this.config.dataRoot&&!this.config.allowCrossOriginDataRoot){var t=url.parse(url.resolve(window.location.href,this.config.dataRoot));if(t.host){var i=url.parse(window.location.href);if(t.host!==i.host||t.protocol!==i.protocol)throw new Error("Invalid JBrowse dataRoot setting. For security, absolute URLs are not allowed. Set `allowCrossOriginDataRoot` to true to disable this security check.")}}new ConfigManager({bootConfig:this.config,defaults:this._configDefaults(),browser:this}).getFinalConfig().then(dojo.hitch(this,function(t){var i=this;this.config=t,this.config.documentDomain&&(document.domain=this.config.documentDomain);var n=t.tracks||[];delete t.tracks,this._addTrackConfigs(n),["show_tracklist","show_nav","show_overview","show_menu","show_fullviewlink","show_tracklabels","update_browser_title"].forEach(function(e){i.config[e]=Util.coerceBoolean(i.config[e])}),this.config.tracks||(this.config.tracks=[]),e.resolve({success:!0})}),e.reject)})},_addTrackConfigs:function(e){return this.config.tracks||(this.config.tracks=[]),this.trackConfigsByName||(this.trackConfigsByName={}),array.forEach(e,function(e){this.trackConfigsByName[e.label]=e,this.config.tracks.push(e)},this),e},_replaceTrackConfigs:function(e){this.trackConfigsByName||(this.trackConfigsByName={}),array.forEach(e,function(e){this.trackConfigsByName[e.label]||console.warn("track with label "+e.label+" does not exist yet.  creating a new one."),this.trackConfigsByName[e.label]=dojo.mixin(this.trackConfigsByName[e.label]||{},e)},this)},_deleteTrackConfigs:function(e){this.config.tracks=array.filter(this.config.tracks||[],function(t){return!array.some(e,function(e){return e.label==t.label})}),array.forEach(e,function(e){this.trackConfigsByName[e.label]?delete this.trackConfigsByName[e.label]:console.warn("track "+e.label+" does not exist, cannot delete")},this)},_configDefaults:function(){return{tracks:[],containerID:"GenomeBrowser",dataRoot:"data",show_tracklist:!0,show_nav:!0,show_menu:!0,show_overview:!0,show_fullviewlink:!0,update_browser_title:!0,updateBrowserURL:!0,refSeqs:"{dataRoot}/seq/refSeqs.json",include:["jbrowse.conf","jbrowse_conf.json"],nameUrl:"{dataRoot}/names/root.json",datasets:{_DEFAULT_EXAMPLES:!0,volvox:{url:"?data=sample_data/json/volvox",name:"Volvox Example"},modencode:{url:"?data=sample_data/json/modencode",name:"MODEncode Example"},yeast:{url:"?data=sample_data/json/yeast",name:"Yeast Example"}},highlightSearchedRegions:!1,highResolutionMode:"auto"}},getRefSeqNumber:function(e){return this.allRefs[e].id},getRefSeqById:function(e){return this.refSeqsById[e]},addRefseqs:function(e){var t=this;this.allRefs||(this.allRefs={}),e.forEach(function(e,i){e.id=i,t.allRefs[e.name]=e}),this.refSeqsById=e,this.refSeqOrder=function(){var t;if(this.config.refSeqOrder){if("by_list"==this.config.refSeqOrder&&this.config.refSeqOrderList){if(lang.isArray(this.config.refSeqOrderList))return this.config.refSeqOrderList;if("string"==typeof this.config.refSeqOrderList)return this.config.refSeqOrderList.split(/\s*,\s*/)}(t=e.slice(0)).sort("length"==this.config.refSeqOrder||"length ascending"==this.config.refSeqOrder?function(e,t){return e.length-t.length}:"length descending"==this.config.refSeqOrder?function(e,t){return t.length-e.length}:"name descending"==this.config.refSeqOrder?function(e,t){return t.name.localeCompare(e.name)}:function(e,t){return e.name.localeCompare(t.name)})}else t=e;return array.map(t,function(e){return e.name})}.call(this);var i=this.cookie("refseq");this.refSeq=this.refSeq||this.allRefs[i]||this.allRefs[this.refSeqOrder[0]]},getRefSeq:function(e){return"string"!=typeof e?this.refSeq||void 0:this.allRefs[e]},onFineMove:function(e,t){if(this.locationTrap){var i=this.view.ref.end-this.view.ref.start,n=Math.round((e-this.view.ref.start)/i*this.view.overviewBox.w+this.view.overviewBox.l),r=Math.round((t-this.view.ref.start)/i*this.view.overviewBox.w+this.view.overviewBox.l);dojo.style(this.locationTrap,{width:r-n+"px",borderBottomWidth:this.view.locationTrapHeight+"px",borderLeftWidth:n+"px",borderRightWidth:this.view.overviewBox.w-r+"px"})}},initTrackMetadata:function(e){return this._milestoneFunction("initTrackMetadata",function(e){var t=dojo.map((this.config.trackMetadata||{}).sources||[],function(e){var t=e.url||"trackMeta.csv",i=e.type||(/\.csv$/i.test(t)?"csv":/\.js(on)?$/i.test(t)?"json":"csv"),n=e.class||{csv:"dojox/data/CsvStore",json:"dojox/data/JsonRestStore"}[i];return n?{class_:n,url:t}:(console.error("No store class found for type '"+i+"', cannot load track metadata from URL "+t),null)});dojo.global.require(Array.prototype.concat.apply(["JBrowse/Store/TrackMetaData"],dojo.map(t,function(e){return e.class_})),dojo.hitch(this,function(i){for(var n=[],r=1;r<arguments.length;r++)n.push(new arguments[r]({url:t[r-1].url}));this.trackMetaDataStore=new i(dojo.mixin(dojo.clone(this.config.trackMetadata||{}),{trackConfigs:this.config.tracks,browser:this,metadataStores:n})),e.resolve({success:!0})}))})},createTrackList:function(){return this._milestoneFunction("createTrack",function(e){var t=this.config.show_tracklist?(this.config.trackSelector||{}).type?this.config.trackSelector.type:"Hierarchical":"Null";/\//.test(t)||(t="JBrowse/View/TrackList/"+t),dojo.global.require([t],dojo.hitch(this,function(t){this.trackListView=new t(dojo.mixin(dojo.clone(this.config.trackSelector)||{},{trackConfigs:this.config.tracks,browser:this,trackMetaData:this.trackMetaDataStore})),this.setGlobalKeyboardShortcut("t",this.trackListView,"toggle"),this.subscribe("/jbrowse/v1/n/tracks/visibleChanged",dojo.hitch(this,function(){this.cookie("tracks",this.view.visibleTrackNames().join(","),{expires:60})})),e.resolve({success:!0})}))})},onVisibleTracksChanged:function(){},showRegion:function(e){var t=Math.round(.2*(e.end-e.start));this.navigateToLocation({ref:e.ref,start:e.start-t,end:e.end+t}),e.tracks&&this.showTracks(array.map(e.tracks,function(e){return e&&(e.label||e.name)||e}))},navigateTo:function(e,t){var i=this;this.afterMilestone("initView",function(){i.searchNames(e).then(function(n){if(!n){var r=i.findReferenceSequence(e);if(r)i.navigateToLocation({ref:r.name});else{var o="string"==typeof e?Util.parseLocString(e):e;if(o&&"start"in o&&"end"in o)return o.initial=t,void i.navigateToLocation(o);new InfoDialog({title:"Not found",content:'Not found: <span class="locString">'+e+"</span>",className:"notfound-dialog"}).show(),i.view.pxPerBp||i.navigateToLocation(i.refSeq)}}})})},findReferenceSequence:function(e){for(var t in this.allRefs)if(!this.compareReferenceNames(t,e))return this.allRefs[t];return null},navigateToLocation:function(e){this.afterMilestone("initView",dojo.hitch(this,function(){var t=e.ref?this.findReferenceSequence(e.ref.name||e.ref):this.refSeq;if(e.initial&&!t&&(new InfoDialog({title:"Not found",content:'Not found: <span class="locString">'+Util.assembleLocString(e,!1)+"</span>",className:"notfound-dialog"}).show(),t=this.refSeq),t){if(e.ref=t.name,"ref"in e&&!("start"in e&&"end"in e)){var i;try{(i=Util.parseLocString(dojo.fromJson(this.cookie("location"))[e.ref].l)).ref=e.ref}catch(e){}if(i)e=i;else{var n=t.end-t.start;e.start=t.start+.1*n,e.end=t.start+.9*n}}if(e.start=Math.max(0,e.start||0),e.end=Math.max(e.start,Math.min(t.end,e.end||t.end)),e.ref==this.refSeq.name)this.view.setLocation(this.refSeq,e.start,e.end),this._updateLocationCookies(e);else{var r=this.view.visibleTrackNames();this.refSeq=this.allRefs[e.ref],this.clearStores(),this.view.setLocation(this.refSeq,e.start,e.end),this._updateLocationCookies(e),this.showTracks(r)}}}))},searchNames:function(e){var t=this;return this._getDeferred("loadNames").then(function(){return t.nameStore.query({name:e}).then(function(i){if(!i.length)return!1;for(var n,r=0;r<i.length;r++)i[r].name==e&&(n=i[r]);if(!n)for(r=0;r<i.length;r++)i[r].name.toLowerCase()==e.toLowerCase()&&(n=i[r]);return n||(n=i[0]),n.location?t.showRegionAfterSearch(n.location):n.multipleLocations&&(t.view.pxPerBp||t.navigateToLocation(t.refSeq),new LocationChoiceDialog({browser:t,locationChoices:n.multipleLocations,title:"Choose "+n.name+" location",prompt:'"'+n.name+'" is found in multiple locations.  Please choose a location to view.'}).show()),!0},function(e){return console.error(e),new InfoDialog({title:"Error",content:"Error reading from name store."}).show(),!1})})},showTracks:function(e){this.afterMilestone("initView",dojo.hitch(this,function(){if("string"==typeof e&&(e=e.split(",")),e){var t=dojo.filter(dojo.map(e,function(e){return this.trackConfigsByName[e]},this),function(e){return e});this.publish("/jbrowse/v1/c/tracks/show",t),this.publish("/jbrowse/v1/n/tracks/visibleChanged")}}))},setGlobalKeyboardShortcut:function(e){this.globalKeyboardShortcuts[e]&&console.warn("WARNING: JBrowse global keyboard shortcut '"+e+"' redefined");var t=dojo.hitch.apply(dojo,Array.prototype.slice.call(arguments,1));this.globalKeyboardShortcuts[e]=t},globalKeyHandler:function(e){if(!dijitFocus.curNode){var t=this.globalKeyboardShortcuts[e.keyChar||String.fromCharCode(e.charCode||e.keyCode)];t&&(t.call(this),e.stopPropagation())}},makeSnapLink:function(){return this.config.dataRoot,new dijitButton({className:"share",innerHTML:"Screenshot",title:"share this view",onClick:function(){var e=electronRequire("fs"),t=electronRequire("electron").remote;t.dialog.showSaveDialog({defaultPath:"*/screenshot.png"},function(i){i&&t.getCurrentWindow().capturePage(function(t){return e.writeFileSync(i,t.toPNG())})})}}).domNode},makeShareLink:function(){if("share_link"in this.config&&!this.config.share_link)return null;var e=this,t="#",i=new dijitButton({className:"share",innerHTML:'<span class="icon"></span> Share',title:"share this view",onClick:function(){return o.value=t,a.href=t,s.show(),o.focus(),o.select(),r.style.display="block",!1}}),n=dojo.create("div",{innerHTML:"Paste this link in <b>email</b> or <b>IM</b>"}),r=dojo.create("div",{className:"copyReminder",innerHTML:"Press CTRL-C to copy"}),o=dojo.create("input",{type:"text",value:t,size:50,readonly:"readonly",onclick:function(){this.select(),r.style.display="block"},onblur:function(){r.style.display="none"}}),a=dojo.create("a",{innerHTML:"Preview",target:"_blank",href:t,style:{display:"block",float:"right"}},n),s=new dijitDialog({className:"sharePane",title:"Share this view",draggable:!1,content:[n,o,r],autofocus:!1}),l=function(){t=e.makeCurrentViewURL()};return dojo.connect(this,"onCoarseMove",l),this.subscribe("/jbrowse/v1/n/tracks/visibleChanged",l),this.subscribe("/jbrowse/v1/n/globalHighlightChanged",l),i.domNode},makeCurrentViewURL:function(e){var t=_typeof(this.config.shareURL);return"function"==t?this.config.shareURL.call(this,this):"string"==t?this.config.shareURL:"".concat(window.location.protocol,"//",window.location.host,window.location.pathname,"?",dojo.objectToQuery(dojo.mixin(dojo.mixin({},this.config.queryParams||{}),dojo.mixin({loc:this.view.visibleRegionLocString(),tracks:this.view.visibleTrackNames().join(","),highlight:(this.getHighlight()||"").toString()},e||{}))))},makeFullViewLink:function(){var e=this,t=dojo.create("a",{className:"topLink",href:window.location.href,target:"_blank",title:"View in full-screen browser",innerHTML:"Full-screen view"}),i=this.config.makeFullViewURL||this.makeCurrentViewURL,n=function(){t.href=i.call(e,e)};return dojo.connect(this,"onCoarseMove",n),this.subscribe("/jbrowse/v1/n/tracks/visibleChanged",n),this.subscribe("/jbrowse/v1/n/globalHighlightChanged",n),t},onCoarseMove:function(e,t){var i={start:e,end:t,ref:this.refSeq.name},n="";if(this.locationBox){(n=this.locationBox.get("value")).length&&(n=' "'+n+'"');var r=Util.assembleLocStringWithLength(i);this.locationBox.set("value",r,!1),this.locationBox.set("placeholder","search features, IDs"),this.goButton.set("disabled",!0)}var o=dojo.byId("location-info");if(o){var a=Util.assembleLocStringWithLength(i);html.set(o,a+n),this.locationBox.set("value","",!1)}this._updateRefSeqSelectBox(),this.reachedMilestone("completely initialized")&&this._updateLocationCookies(i),this.publish("/jbrowse/v1/n/navigate",i)},_updateRefSeqSelectBox:function(){this.refSeqSelectBox&&(array.some(this.refSeqSelectBox.getOptions(),function(e){return e.value==this.refSeq.name},this)||this.refSeqSelectBox.set("options",this.refSeqSelectBox.getOptions().concat({label:this.refSeq.name,value:this.refSeq.name})),this.refSeqSelectBox.set("value",this.refSeq.name,!1))},_updateLocationCookies:function(e){var t="string"==typeof e?e:Util.assembleLocString(e,!1),i=dojo.fromJson(this.cookie("location"))||{_version:1};i._version||(i=this._migrateLocMap(i)),i[this.refSeq.name]={l:t,t:Math.round((new Date).getTime()/1e3)-1340211510},i=this._limitLocMap(i,this.config.maxSavedLocations||10),this.cookie("location",dojo.toJson(i),{expires:60}),this.cookie("refseq",this.refSeq.name)},_migrateLocMap:function(e){var t={_version:1};for(var i in e)t[i]={l:e[i],t:0};return t},_limitLocMap:function(e,t){var i=dojof.keys(e);if(i.length<=t)return e;e=dojo.clone(e);var n=i.sort(function(t,i){return e[i].t-e[t].t}).slice(t-1);return dojo.forEach(n,function(t){delete e[t]}),e},cookie:function(e,t){var i=(e=this.config.containerID+"-"+e)+"-"+(this.config.dataset_id||"");"object"==(void 0===t?"undefined":_typeof(t))&&(t=dojo.toJson(t));var n=this.config.cookieSizeLimit||1200;if(null!=t&&t.length>n)return console.warn("not setting cookie '"+i+"', value too big ("+t.length+" > "+n+")"),localStorage.getItem(i);if(null!=t)try{return localStorage.setItem(i,t)}catch(e){}return localStorage.getItem(i)||dojo.cookie(e)},createNavBox:function createNavBox(parent){var thisB=this,align="center",navbox=dojo.create("div",{id:"navbox",style:{"text-align":align}},parent),locationTrapContainer=dojo.create("div",{className:"locationTrapContainer"},navbox);this.locationTrap=dojo.create("div",{className:"locationTrap"},locationTrapContainer);var four_nbsp=String.fromCharCode(160);four_nbsp=four_nbsp+four_nbsp+four_nbsp+four_nbsp,navbox.appendChild(document.createTextNode(four_nbsp));var moveLeft=document.createElement("img");moveLeft.src=this.resolveUrl("img/Empty.png"),moveLeft.id="moveLeft",moveLeft.className="icon nav",navbox.appendChild(moveLeft),dojo.connect(moveLeft,"click",this,function(e){dojo.stopEvent(e),this.view.slide(.9)});var moveRight=document.createElement("img");moveRight.src=this.resolveUrl("img/Empty.png"),moveRight.id="moveRight",moveRight.className="icon nav",navbox.appendChild(moveRight),dojo.connect(moveRight,"click",this,function(e){dojo.stopEvent(e),this.view.slide(-.9)}),navbox.appendChild(document.createTextNode(four_nbsp));var bigZoomOut=document.createElement("img");bigZoomOut.src=this.resolveUrl("img/Empty.png"),bigZoomOut.id="bigZoomOut",bigZoomOut.className="icon nav",navbox.appendChild(bigZoomOut),dojo.connect(bigZoomOut,"click",this,function(e){dojo.stopEvent(e),this.view.zoomOut(void 0,void 0,2)});var zoomOut=document.createElement("img");zoomOut.src=this.resolveUrl("img/Empty.png"),zoomOut.id="zoomOut",zoomOut.className="icon nav",navbox.appendChild(zoomOut),dojo.connect(zoomOut,"click",this,function(e){dojo.stopEvent(e),this.view.zoomOut()});var zoomIn=document.createElement("img");zoomIn.src=this.resolveUrl("img/Empty.png"),zoomIn.id="zoomIn",zoomIn.className="icon nav",navbox.appendChild(zoomIn),dojo.connect(zoomIn,"click",this,function(e){dojo.stopEvent(e),this.view.zoomIn()});var bigZoomIn=document.createElement("img");bigZoomIn.src=this.resolveUrl("img/Empty.png"),bigZoomIn.id="bigZoomIn",bigZoomIn.className="icon nav",navbox.appendChild(bigZoomIn),dojo.connect(bigZoomIn,"click",this,function(e){dojo.stopEvent(e),this.view.zoomIn(void 0,void 0,2)}),navbox.appendChild(document.createTextNode(four_nbsp));var locationMode="",locationWidth="40ex";"separate"===this.config.locationBox&&(locationMode="separate-location-box",locationWidth="25ex");var searchbox=dojo.create("span",{id:"search-box",class:locationMode},navbox),refSeqSelectBoxPlaceHolder=dojo.create("span",{id:"search-refseq"},searchbox);return this.locationBox=new dijitComboBox({id:"location",name:"location",style:{width:locationWidth},maxLength:400,searchAttr:"name",title:"Enter a chromosomal position, symbol or ID to search"},dojo.create("input",{},searchbox)),this.afterMilestone("loadNames",dojo.hitch(this,function(){this.nameStore&&this.locationBox.set("store",this.nameStore)})),this.locationBox.focusNode.spellcheck=!1,dojo.query("div.dijitArrowButton",this.locationBox.domNode).orphan(),dojo.connect(this.locationBox.focusNode,"keydown",this,function(e){e.keyCode==keys.ESCAPE?this.locationBox.set("value",""):e.keyCode==keys.ENTER?(this.locationBox.closeDropDown(!1),this.navigateTo(this.locationBox.get("value")),this.goButton.set("disabled",!0),dojo.stopEvent(e)):this.goButton.set("disabled",!1)}),dojo.connect(navbox,"onselectstart",function(e){return e.stopPropagation(),!0}),function(){var dropDownProto=eval(this.locationBox.dropDownClass).prototype,oldCreateOption=dropDownProto._createOption;dropDownProto._createOption=function(e){var t=oldCreateOption.apply(this,arguments);return e.hitLimit&&dojo.addClass(t,"moreMatches"),t};var oldOnClick=dropDownProto.onClick;dropDownProto.onClick=function(e){if(dojo.hasClass(e,"moreMatches"))return null;var t=oldOnClick.apply(this,arguments);return thisB.navigateTo(thisB.locationBox.get("value")),t}}.call(this),this.goButton=new dijitButton({label:"Go",onClick:dojo.hitch(this,function(e){this.navigateTo(this.locationBox.get("value")),this.goButton.set("disabled",!0),dojo.stopEvent(e)}),id:"search-go-btn"},dojo.create("button",{},searchbox)),this.highlightButtonPreviousState=!1,"separate"===this.config.locationBox&&(this.locationInfoBox=domConstruct.place("<div id='location-info'>location</div>",navbox)),this.highlightButton=new dojoxTriStateCheckBox({title:"Highlight a Region",id:"highlight-btn",states:[!1,!0,"mixed"],onChange:function(){if(1==this.get("checked"))thisB.view._rubberStop(),thisB.view.behaviorManager.swapBehaviors("normalMouse","highlightingMouse");else if(0==this.get("checked")){var e=thisB.getHighlight();e&&(thisB.clearHighlight(),thisB.view.redrawRegion(e))}else 1!=thisB.highlightButtonPreviousState?thisB.highlightButton.set("checked",!1):thisB.highlightButtonPreviousState=!1,thisB.view._rubberStop(),thisB.view.behaviorManager.swapBehaviors("highlightingMouse","normalMouse")}},dojo.create("button",{id:"highlight-btn"},navbox)),this.subscribe("/jbrowse/v1/n/globalHighlightChanged",function(){thisB.highlightButton.set("checked",!1)}),this.afterMilestone("loadRefSeqs",dojo.hitch(this,function(){if(this.refSeqOrder&&this.refSeqOrder.length){for(var e=this.config.refSeqSelectorMaxSize||30,t=Math.min(e,this.refSeqOrder.length),i=[],n=0;n<t;n++)i.push({label:this.refSeqOrder[n],value:this.refSeqOrder[n]});var r="(first "+t+" ref seqs)";this.refSeqOrder.length>e&&i.push({label:r,value:r,disabled:!0}),this.refSeqSelectBox=new dijitSelectBox({name:"refseq",value:this.refSeq?this.refSeq.name:null,options:i,onChange:dojo.hitch(this,function(e){e!=r?e!=this.refSeq.name&&this.navigateToLocation({ref:e}):this.refSeqSelectBox.set("value",this.refSeq.name)})}).placeAt(refSeqSelectBoxPlaceHolder)}var o=this.config.locationBoxLength||function(){if(!this.refSeqOrder.length)return 20;var e=this.refSeqOrder.length<1e3&&function(){var e;return array.forEach(this.refSeqOrder,function(t){var i=this.allRefs[t];i.length||(i.length=i.end-i.start+1),(!e||e.length<i.length)&&(e=i)},this),e}.call(this)||this.refSeqOrder.length&&this.allRefs[this.refSeqOrder[this.refSeqOrder.length-1]]||20;return Util.assembleLocStringWithLength({ref:e.name,start:e.end-1,end:e.end,length:e.length}).length}.call(this)||20;this.locationBox.domNode.style.width=o+"ex"})),navbox},getHighlight:function(){return this._highlight||null},getBookmarks:function(){return this.config.bookmarkService?request(this.config.bookmarkService+"?"+ioQuery.objectToQuery({sequence:this.refSeq.name,organism:this.config.dataset_id}),{handleAs:"json"}):this.config.bookmarks},setHighlight:function(e){return e&&e instanceof Location?this._highlight=e:e&&(this._highlight=new Location(e)),this.publish("/jbrowse/v1/n/globalHighlightChanged",[this._highlight]),this.getHighlight()},_updateHighlightClearButton:function(){var e=!!this._highlight;this._highlightClearButton&&this._highlightClearButton.set("disabled",!e),this.highlightButton&&(this.highlightButton.set("checked",!!e&&"mixed"),this.highlightButtonPreviousState=e)},clearHighlight:function(){this._highlight&&(delete this._highlight,this.publish("/jbrowse/v1/n/globalHighlightChanged",[]))},setHighlightAndRedraw:function(e){e=this.regularizeLocation(e);var 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All rights reserved.\n\tCode licensed under the BSD License:\n\thttp://developer.yahoo.net/yui/license.txt\n\tversion: 2.2.1\n*/\n  /* End YUI imported code. */\n  /*****************************************************************************************/\n  /*\n\tBegin Dojo additions.\n\n\tStyle definitions, based loosely on the Dijit Tundra theme.\n\tRelative unit calculations based on "Compose to a Vertical Rhythm",\n\tby Richard Rutter (http://24ways.org/2006/compose-to-a-vertical-rhythm)\n\n\tIf changing the font size, make sure you do it in both\n\tpercent and px (% for IE, px for everything else).\n\t% value based on default size of 16px (in most browsers).\n\tSo if you want the default size to be 14px, set the\n\t% to 87% (14 / 16 = 0.875).\n\n\tTypical values:\n\t10px: 62.5%\n\t11px: 69% (68.75)\n\t12px: 75%\n\t13px: 81.25%\n\t14px: 87.5%\n\t16px: 100%\n\n\tDefault: 12px\n*/\n  /* Headings */\n  /* paragraphs, quotes and lists */\n  /* pre and code */\n  /*\n\tTables\n\n\tNote that these table definitions make the assumption that you are using tables\n\tto display tabular data, and NOT using tables as layout mechanisms.  If you are\n\tusing tables for layout, you will probably want to override these rules with\n\tmore specific ones.\n\n\tThese definitions make tabular data look presentable, particularly when presented\n\tinline with paragraphs.\n*/ }\n  .jbrowse table, .jbrowse tbody, .jbrowse th, .jbrowse tr, .jbrowse td, .dijitDialog table, .dijitDialog tbody, .dijitDialog th, .dijitDialog tr, .dijitDialog td, .dijitMenu table, .dijitMenu tbody, .dijitMenu th, .dijitMenu tr, .dijitMenu td {\n    background: none;\n    color: inherit; }\n  .jbrowse tr, .jbrowse td, .jbrowse table, .dijitDialog tr, .dijitDialog td, .dijitDialog table, .dijitMenu tr, .dijitMenu td, .dijitMenu table {\n    margin: 0;\n    border: 0;\n    padding: 0;\n    line-height: normal; }\n  .jbrowse label, .dijitDialog label, .dijitMenu label {\n    font-weight: inherit; }\n  .jbrowse body, .dijitDialog body, .dijitMenu body {\n    margin: 0;\n    padding: 0; }\n  .jbrowse h1, .dijitDialog h1, .dijitMenu h1 {\n    font-size: 1.5em;\n    font-weight: normal;\n    line-height: 1em;\n    margin-top: 1em;\n    margin-bottom: 0; }\n  .jbrowse h2, .dijitDialog h2, .dijitMenu h2 {\n    font-size: 1.1667em;\n    font-weight: bold;\n    line-height: 1.286em;\n    margin-top: 1.929em;\n    margin-bottom: 0.643em; }\n  .jbrowse h3, .jbrowse h4, .jbrowse h5, .jbrowse h6, .dijitDialog h3, .dijitDialog h4, .dijitDialog h5, .dijitDialog h6, .dijitMenu h3, .dijitMenu h4, .dijitMenu h5, .dijitMenu h6 {\n    font-size: 1em;\n    font-weight: bold;\n    line-height: 1.5em;\n    margin-top: 1.5em;\n    margin-bottom: 0; }\n  .jbrowse p, .dijitDialog p, .dijitMenu p {\n    font-size: 1em;\n    margin-top: 1.5em;\n    margin-bottom: 1.5em;\n    line-height: 1.5em; }\n  .jbrowse blockquote, .dijitDialog blockquote, .dijitMenu blockquote {\n    font-size: 0.916em;\n    margin-top: 3.272em;\n    margin-bottom: 3.272em;\n    line-height: 1.636em;\n    padding: 1.636em;\n    border-top: 1px solid #ccc;\n    border-bottom: 1px solid #ccc; }\n  .jbrowse ol li, .jbrowse ul li, .dijitDialog ol li, .dijitDialog ul li, .dijitMenu ol li, .dijitMenu ul li {\n    font-size: 1em;\n    line-height: 1.5em;\n    margin: 0; }\n  .jbrowse pre, .jbrowse code, .dijitDialog pre, .dijitDialog code, .dijitMenu pre, .dijitMenu code {\n    font-size: 115%;\n    *font-size: 100%;\n    font-family: Courier, "Courier New";\n    background-color: #efefef;\n    border: 1px solid #ccc; }\n  .jbrowse pre, .dijitDialog pre, .dijitMenu pre {\n    border-width: 1px 0;\n    padding: 1.5em; }\n  .jbrowse table, .dijitDialog table, .dijitMenu table {\n    font-size: 100%; }\n  .jbrowse .dojoTabular, .dijitDialog .dojoTabular, .dijitMenu .dojoTabular {\n    border-collapse: collapse;\n    border-spacing: 0;\n    border: 1px solid #ccc;\n    margin: 0 1.5em; }\n  .jbrowse .dojoTabular th, .dijitDialog .dojoTabular th, .dijitMenu .dojoTabular th {\n    text-align: center;\n    font-weight: bold; }\n  .jbrowse .dojoTabular thead,\n  .jbrowse .dojoTabular tfoot, .dijitDialog .dojoTabular thead,\n  .dijitDialog .dojoTabular tfoot, .dijitMenu .dojoTabular thead,\n  .dijitMenu .dojoTabular tfoot {\n    background-color: #efefef;\n    border: 1px solid #ccc;\n    border-width: 1px 0; }\n  .jbrowse .dojoTabular th,\n  .jbrowse .dojoTabular td, .dijitDialog .dojoTabular th,\n  .dijitDialog .dojoTabular td, .dijitMenu .dojoTabular th,\n  .dijitMenu .dojoTabular td {\n    padding: 0.25em 0.5em; }\n  .jbrowse .jbrowseIconHelp,\n  .jbrowse .jbrowseIconBusy,\n  .jbrowse .jbrowseIconLink,\n  .jbrowse .jbrowseIconCancel,\n  .jbrowse .jbrowseIconHorizontalResize,\n  .jbrowse .jbrowseIconVerticalResize, .dijitDialog .jbrowseIconHelp,\n  .dijitDialog .jbrowseIconBusy,\n  .dijitDialog .jbrowseIconLink,\n  .dijitDialog .jbrowseIconCancel,\n  .dijitDialog .jbrowseIconHorizontalResize,\n  .dijitDialog .jbrowseIconVerticalResize, .dijitMenu .jbrowseIconHelp,\n  .dijitMenu .jbrowseIconBusy,\n  .dijitMenu .jbrowseIconLink,\n  .dijitMenu .jbrowseIconCancel,\n  .dijitMenu .jbrowseIconHorizontalResize,\n  .dijitMenu .jbrowseIconVerticalResize {\n    background-image: url('+n(i(867))+");\n    width: 16px;\n    height: 16px; }\n  .jbrowse .dijitDisabled .jbrowseIconHelp,\n  .jbrowse .dijitDisabled .jbrowseIconBusy,\n  .jbrowse .dijitDisabled .jbrowseIconLink,\n  .jbrowse .dijitDisabled .jbrowseIconCancel,\n  .jbrowse .dijitDisabled .jbrowseIconHorizontalResize,\n  .jbrowse .dijitDisabled .jbrowseIconVerticalResize, .dijitDialog .dijitDisabled .jbrowseIconHelp,\n  .dijitDialog .dijitDisabled .jbrowseIconBusy,\n  .dijitDialog .dijitDisabled .jbrowseIconLink,\n  .dijitDialog .dijitDisabled .jbrowseIconCancel,\n  .dijitDialog .dijitDisabled .jbrowseIconHorizontalResize,\n  .dijitDialog .dijitDisabled .jbrowseIconVerticalResize, .dijitMenu .dijitDisabled .jbrowseIconHelp,\n  .dijitMenu .dijitDisabled .jbrowseIconBusy,\n  .dijitMenu .dijitDisabled .jbrowseIconLink,\n  .dijitMenu .dijitDisabled .jbrowseIconCancel,\n  .dijitMenu .dijitDisabled .jbrowseIconHorizontalResize,\n  .dijitMenu .dijitDisabled .jbrowseIconVerticalResize {\n    background-image: url("+n(i(1028))+");\n    width: 16px;\n    height: 16px; }\n  .jbrowse .jbrowseIconHelp, .dijitDialog .jbrowseIconHelp, .dijitMenu .jbrowseIconHelp {\n    background-position: 0; }\n  .jbrowse .jbrowseIconLink, .dijitDialog .jbrowseIconLink, .dijitMenu .jbrowseIconLink {\n    background-position: -152px; }\n  .jbrowse .jbrowseIconCancel, .dijitDialog .jbrowseIconCancel, .dijitMenu .jbrowseIconCancel {\n    background-position: -170px; }\n  .jbrowse .jbrowseIconBusy, .dijitDialog .jbrowseIconBusy, .dijitMenu .jbrowseIconBusy {\n    background-image: url("+n(i(1029))+"); }\n  .jbrowse .jbrowseIconHorizontalResize, .dijitDialog .jbrowseIconHorizontalResize, .dijitMenu .jbrowseIconHorizontalResize {\n    background-position: -209px; }\n  .jbrowse .jbrowseIconVerticalResize, .dijitDialog .jbrowseIconVerticalResize, .dijitMenu .jbrowseIconVerticalResize {\n    background-position: -230px; }\n\n.dijitDialog {\n  line-height: 17px;\n  /* styles for the about JBrowse dialog */\n  /* styles for the highlight-setting dialog */\n  /* location choice dialog */\n  /* styles dealing with popups launched by clicking on features */\n  /* styles for popup dialogs */\n  /* styles for popup feature detail dialogs from tracks */\n  /* field names that have tooltips */\n  /*\n force long sequences in feature and alignment detail dialogs to\n wrap at 45em\n*/\n  /* styles for the autocomplete menu */\n  /* NOTE: browsers that don't support rgba colors will fall back to all\n   track labels being #bcbcbc */\n  /* styles for feature labels */\n  /*styles for vertical line and BP label*/\n  /* styles for per-base quality table in alignment detail pages */ }\n  .dijitDialog .dijitDialogCloseIcon {\n    height: 25px;\n    width: 25px;\n    top: 0px;\n    right: 0px;\n    background: url("+n(i(867))+") no-repeat -73px 6px;\n    border-left: 1px inset #fcfcfc; }\n  .dijitDialog .dijitDialogCloseIcon:hover {\n    background-position: -93px 6px;\n    border-left-color: #ccc; }\n  .dijitDialog .dijitDialogCloseIcon:focus {\n    outline: none; }\n  .dijitDialog .dijitDialogPaneActionBar {\n    text-align: center;\n    clear: both;\n    padding-top: 1em; }\n  .dijitDialog .dijitDialogPaneContent {\n    border-top: 1px solid #acacac; }\n  .dijitDialog .dijitDialogTitleBar {\n    padding-right: 25px; }\n  .dijitDialog .default_about {\n    text-align: center; }\n  .dijitDialog .default_about * {\n    margin: 0.5em 0; }\n  .dijitDialog .default_about h1 {\n    margin-top: 0; }\n  .dijitDialog div.powered_by {\n    margin-top: 0.5em;\n    text-align: center; }\n  .dijitDialog .setHighlightDialog label {\n    padding-right: 0.5em; }\n  .dijitDialog .locationChoiceDialog div.prompt {\n    margin: 0.3em 1em 1em 1em; }\n  .dijitDialog .locationChoiceDialog .dgrid-row .dijitButton {\n    margin: 0 0.5em; }\n  .dijitDialog .locationChoiceDialog .goButtonColumn,\n  .dijitDialog .locationChoiceDialog .showButtonColumn {\n    text-align: center;\n    white-space: nowrap; }\n  .dijitDialog .notfound-dialog .message {\n    margin: 1em;\n    text-align: center; }\n  .dijitDialog .help_dialog ul {\n    padding-left: 0; }\n  .dijitDialog .help_dialog div.main > dl {\n    width: 90%;\n    margin: 0 auto 1em auto; }\n  .dijitDialog .help_dialog dt {\n    font-weight: bold;\n    margin-top: 1em; }\n  .dijitDialog .help_dialog dd {\n    margin-left: 2em; }\n  .dijitDialog .help_dialog dl dl.searchexample dt,\n  .dijitDialog .help_dialog span.example {\n    font-weight: normal;\n    font-family: monospace; }\n  .dijitDialog .popup-dialog-iframe .dijitDialogPaneContent {\n    padding: 0; }\n  .dijitDialog a.dialog-new-window {\n    padding-left: 1em;\n    font-size: 90%; }\n  .dijitDialog .feature-detail {\n    width: 50em;\n    color: #333; }\n  .dijitDialog .feature-detail .genotype_summary {\n    padding: 1em; }\n  .dijitDialog .feature-detail .genotype_summary table {\n    border-collapse: collapse; }\n  .dijitDialog .feature-detail .genotype_summary td {\n    padding: 0 1em; }\n  .dijitDialog .feature-detail .genotype_summary td.total {\n    font-weight: bold;\n    border-top: 1px solid #444; }\n  .dijitDialog .feature-detail .genotype_summary td.count, .dijitDialog .feature-detail .genotype_summary td.pct {\n    text-align: right; }\n  .dijitDialog .feature-detail .genotype_summary td.category.level_1 {\n    padding-left: 2em; }\n  .dijitDialog .feature-detail .genotype_summary td.category.level_2 {\n    padding-left: 3em; }\n  .dijitDialog .feature-detail .genotype_summary td.category.level_3 {\n    padding-left: 4em; }\n  .dijitDialog .feature-detail .genotype_summary td.category.level_4 {\n    padding-left: 5em; }\n  .dijitDialog .feature-detail .subfeature-detail {\n    background: #fafafa;\n    background: rgba(0, 0, 0, 0.1);\n    border: 1px outset #B9B9B9;\n    padding: 0.6em;\n    margin-bottom: 0.8em; }\n  .dijitDialog .feature-detail .subfeature-load-button {\n    margin-top: 15px;\n    margin-left: 10px; }\n  .dijitDialog .feature-detail .fastaView {\n    padding: 0;\n    border: 1px solid #aaa; }\n  .dijitDialog .feature-detail .fastaView .dijitToolbar {\n    text-align: right; }\n  .dijitDialog .feature-detail .fastaView textarea {\n    padding: 1em 1.5em;\n    margin: 0;\n    border: none; }\n  .dijitDialog .feature-detail div.core {\n    font-size: 110%; }\n  .dijitDialog .feature-detail div.core h2.sectiontitle {\n    margin-top: 0; }\n  .dijitDialog .feature-detail h2.sectiontitle {\n    border-bottom: 1px solid rgba(0, 0, 0, 0.1);\n    margin: 1em 0 0.7em 0; }\n  .dijitDialog .detail .value_container {\n    display: inline-block;\n    max-height: 20em;\n    overflow-y: auto;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .dijitDialog .detail .value_container.big, .dijitDialog .detail .value_container.dgrid {\n    border: 1px solid rgba(0, 0, 50, 0.1);\n    margin-left: 1em;\n    margin-top: 0.3em; }\n  .dijitDialog .detail .multi_value .value {\n    border: 1px solid #ddd;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .dijitDialog .detail .value {\n    display: inline-block;\n    vertical-align: top;\n    padding: 0 0.7em;\n    line-height: 1.8; }\n  .dijitDialog .detail .field {\n    margin: 0;\n    display: inline-block;\n    min-width: 90px;\n    vertical-align: top;\n    padding: 2px 0.5em;\n    background: rgba(50, 85, 255, 0.1);\n    border-bottom: 1px solid #D2D4E4;\n    border-bottom-color: rgba(0, 0, 0, 0.1);\n    font-size: 1.1667em; }\n  .dijitDialog .detail .field[title], .dijitDialog .detail .dgrid-cell[title] {\n    background: rgba(255, 245, 50, 0.3); }\n  .dijitDialog .detail .field[title]:hover, .dijitDialog .detail .dgrid-cell[title]:hover {\n    background: rgba(255, 255, 50, 0.7); }\n  .dijitDialog .detail .value.long {\n    word-wrap: break-word;\n    width: 45em; }\n  .dijitDialog .detail .field_container {\n    margin-left: 1em;\n    margin-bottom: 2px; }\n  .dijitDialog .detail hr {\n    margin: 0.8em 4em 0.5em 0.7em; }\n  .dijitDialog .loaded-plugins {\n    text-align: left; }\n  .dijitDialog .loaded-plugins li {\n    margin: 0em; }\n  .dijitDialog .plugins-list {\n    max-height: 100px;\n    overflow: auto; }\n  .dijitDialog .dgrid.genotypes table {\n    margin: 0; }\n  .dijitDialog .export-view-dialog .dijitDialogPaneContent {\n    background: #fafafa; }\n  .dijitDialog .export-view-dialog .save {\n    display: inline-block;\n    border: 1px solid #AFAFAF;\n    padding: 2px 5px 2px 0px; }\n  .dijitDialog.fileDialog {\n    color: #333; }\n    .dijitDialog.fileDialog label {\n      font-weight: bold;\n      padding: 0 0.5em;\n      display: inline; }\n    .dijitDialog.fileDialog th {\n      font-weight: bold;\n      border-bottom: 2px solid black; }\n    .dijitDialog.fileDialog .dijitDialogPaneContent > div.intro {\n      width: 27em;\n      text-align: justify;\n      position: relative;\n      left: 12%;\n      margin: 1.4em 0 1em 0; }\n    .dijitDialog.fileDialog .connector {\n      background: #333;\n      height: 6px;\n      width: 12px;\n      position: absolute;\n      bottom: -6px;\n      left: 50%;\n      margin-left: -6px; }\n    .dijitDialog.fileDialog h2, .dijitDialog.fileDialog h3 {\n      margin: 0;\n      padding: 0;\n      font-size: 125%; }\n    .dijitDialog.fileDialog .dijitDialogPaneContent > div {\n      position: relative;\n      width: 40em;\n      padding: 0 0 0.75em 0;\n      margin: 6px 0; }\n    .dijitDialog.fileDialog div.aux {\n      text-align: center;\n      margin-bottom: 1em; }\n    .dijitDialog.fileDialog .resourceControls {\n      height: 10em;\n      position: relative; }\n    .dijitDialog.fileDialog .resourceControls > div {\n      width: 19.5em;\n      box-sizing: border-box;\n      height: 100%; }\n    .dijitDialog.fileDialog .resourceControls > div > h3 {\n      height: 19%; }\n    .dijitDialog.fileDialog .soleResourceControl {\n      height: 10em;\n      position: relative; }\n    .dijitDialog.fileDialog .soleResourceControl > div {\n      width: 40em;\n      box-sizing: border-box;\n      height: 100%; }\n    .dijitDialog.fileDialog .soleResourceControl > div > h3 {\n      height: 19%; }\n    .dijitDialog.fileDialog .localFilesControl {\n      position: absolute;\n      top: 0;\n      left: 0; }\n    .dijitDialog.fileDialog .dijitUploader {\n      position: absolute;\n      margin: 0; }\n    .dijitDialog.fileDialog .remoteURLsControl textarea,\n    .dijitDialog.fileDialog .localFilesControl .dragArea {\n      height: 81%;\n      position: relative;\n      border: 1px solid #b3b3b3;\n      width: 100%;\n      box-sizing: border-box; }\n    .dijitDialog.fileDialog .localFilesControl .dragArea:hover {\n      border: 1px dashed green; }\n    .dijitDialog.fileDialog .localFilesControl .dragArea .dragMessage {\n      height: 2em;\n      position: absolute;\n      top: 60%;\n      font-weight: bold;\n      margin-top: -1em;\n      text-align: center;\n      width: 100%; }\n    .dijitDialog.fileDialog .remoteURLsControl textarea {\n      font-size: 10px;\n      background: #f2f2f2; }\n    .dijitDialog.fileDialog .remoteURLsControl textarea:hover {\n      background: white;\n      border-color: #333; }\n    .dijitDialog.fileDialog .remoteURLsControl {\n      position: absolute;\n      top: 0;\n      right: 0; }\n    .dijitDialog.fileDialog .resourceList {\n      background: #bcd3ef; }\n    .dijitDialog.fileDialog .dijitSelect td.dijitStretch {\n      width: 6em; }\n    .dijitDialog.fileDialog .resourceList > h3, .dijitDialog.fileDialog .trackList > h3 {\n      padding: 0 0.6em;\n      line-height: 2.1;\n      margin-bottom: 0.5em; }\n    .dijitDialog.fileDialog .emptyMessage {\n      width: 100%;\n      font-size: 110%;\n      color: #686868;\n      font-weight: bold;\n      text-align: center;\n      line-height: 4; }\n    .dijitDialog.fileDialog .trackList {\n      background: #8cb1dd; }\n    .dijitDialog.fileDialog .resourceList > table, .dijitDialog.fileDialog .trackList > table {\n      width: 95%;\n      padding: 0 0.75em 0.5em 0.75em;\n      margin: 0 auto;\n      border-collapse: collapse; }\n  .dijitDialog .jbrowseStandaloneDatasetSelector {\n    margin-left: 2em;\n    font-size: 120%; }\n  .dijitDialog .track .global_highlight {\n    position: absolute;\n    background: rgba(255, 255, 0, 0.7);\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box;\n    border: 1px solid #ffb20d;\n    border-width: 0; }\n  .dijitDialog .track .global_highlight.left {\n    border-left-width: 1px; }\n  .dijitDialog .track .global_highlight.right {\n    border-right-width: 1px; }\n  .dijitDialog .track .global_highlight_mod {\n    position: absolute;\n    background: rgba(255, 255, 0, 0.7);\n    box-sizing: border-box;\n    border: 1px solid black;\n    border-width: 0; }\n  .dijitDialog .track .global_highlight_mod.left {\n    border-left-width: 1px; }\n  .dijitDialog .track .global_highlight_mod.right {\n    border-right-width: 1px; }\n  .dijitDialog input {\n    outline: none; }\n  .dijitDialog .ghosted {\n    color: #aaa; }\n  .dijitDialog fieldset {\n    padding-left: 1em;\n    margin: 0.7em 0.5em; }\n  .dijitDialog fieldset > legend {\n    font-weight: bold;\n    margin-left: -1em; }\n  .dijitDialog .locString {\n    font-family: Courier New,monospace; }\n  .dijitDialog .fasta {\n    font-family: Courier New,monospace;\n    font-size: 14px; }\n  .dijitDialog .verticaltext {\n    transform: rotate(-90deg);\n    position: absolute;\n    border: 1px solid black; }\n  .dijitDialog .horizontaltext {\n    position: absolute;\n    border: 1px solid black; }\n  .dijitDialog .dijitComboBoxMenu .locString, .dijitDialog .dijitComboBoxMenu .multipleLocations {\n    margin-left: 1em; }\n  .dijitDialog .dijitComboBoxMenu .multipleLocations {\n    color: #333; }\n  .dijitDialog .nav {\n    vertical-align: middle;\n    z-index: 10; }\n  .dijitDialog input.icon {\n    display: -moz-inline-stack;\n    display: inline-block;\n    zoom: 1; }\n  .dijitDialog div.container {\n    position: absolute;\n    z-index: 0; }\n  .dijitDialog div.dragWindow {\n    position: absolute;\n    overflow: hidden;\n    z-index: 1; }\n  .dijitDialog div.vertical_scrollbar {\n    width: 6px;\n    background: #eee;\n    background: rgba(235, 235, 235, 0.62);\n    border-left: 1px solid #DDD9D9; }\n  .dijitDialog div.vertical_scrollbar .vertical_position_marker {\n    background: #555;\n    opacity: 0.8;\n    border-radius: 5px;\n    width: 100%;\n    border-right: 1px solid #ccc; }\n  .dijitDialog .draggable {\n    cursor: move; }\n  .dijitDialog .rubberBandAvailable {\n    cursor: crosshair; }\n  .dijitDialog #navbox {\n    padding-top: 3px;\n    position: relative;\n    text-align: center; }\n    .dijitDialog #navbox * {\n      font-size: 12px;\n      font-family: sans-serif; }\n    .dijitDialog #navbox .dijitButton, .dijitDialog #navbox .dijitToggleButton, .dijitDialog #navbox .dijitTextBox, .dijitDialog #navbox .dijitSelect, .dijitDialog #navbox .dojoxTriStateCheckBox {\n      height: 20px;\n      box-sizing: border-box;\n      -moz-box-sizing: border-box;\n      -webkit-box-sizing: border-box;\n      -ms-box-sizing: border-box; }\n    .dijitDialog #navbox .dijitSelectLabel {\n      padding: 0 2px; }\n    .dijitDialog #navbox .dijitInputField {\n      padding-left: 3%; }\n    .dijitDialog #navbox .dijitArrowButton {\n      width: 15px; }\n  .dijitDialog .moreMatches {\n    font-style: italic;\n    color: #aaa; }\n  .dijitDialog .moreMatches.dijitMenuItemSelected {\n    background: none;\n    color: #ccc;\n    cursor: default; }\n  .dijitDialog div.locationTrapContainer {\n    position: absolute;\n    z-index: -11;\n    height: 100%;\n    width: 100%;\n    top: 0;\n    left: 0;\n    background-color: white; }\n  .dijitDialog div.locationTrap {\n    position: absolute;\n    z-index: -10;\n    height: 0;\n    top: 0;\n    left: 0;\n    border-color: transparent;\n    border-style: solid;\n    border-bottom-color: #A9C6EB;\n    border-top: 0px dotted transparent;\n    box-sizing: content-box; }\n  .dijitDialog div.locationThumb {\n    position: absolute;\n    top: 0px;\n    /* if you change this border from 2px, change GenomeView.showTrap */\n    border: 2px solid red;\n    margin: 0px -2px 0px -2px;\n    height: 23px;\n    cursor: move;\n    background: rgba(0, 121, 245, 0.1); }\n  .dijitDialog div.locationThumb.dojoMoveItem {\n    cursor: move; }\n  .dijitDialog div.topLink {\n    position: absolute;\n    right: 0;\n    top: 0;\n    z-index: 50;\n    background: white;\n    border: 1px solid #888;\n    border-width: 0 0 1px 1px; }\n  .dijitDialog a.topLink {\n    padding: 0 0.5ex 0 0.5ex;\n    text-decoration: none;\n    color: blue; }\n  .dijitDialog div.overview {\n    position: relative;\n    width: 100%;\n    padding: 0;\n    z-index: -5;\n    display: block;\n    height: 23px;\n    background: #FAFAFA url("+n(i(640))+") repeat-x top left;\n    border-style: solid;\n    border-width: 1px 0px 1px 0px;\n    border-color: #555;\n    color: #aaa;\n    text-align: center;\n    cursor: crosshair; }\n  .dijitDialog div.block {\n    position: absolute;\n    overflow: visible;\n    top: 0px;\n    height: 100%; }\n  .dijitDialog div.block.height_overflow .height_overflow_message {\n    position: absolute;\n    color: #4d4d4d;\n    border-bottom: 2px solid #4d4d4d;\n    text-shadow: white 0px 0px 1px;\n    white-space: nowrap;\n    width: 100%;\n    font-weight: bold;\n    text-align: center;\n    z-index: 2000;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .dijitDialog div.block.timed_out {\n    background: #ddd;\n    background: rgba(0, 0, 0, 0.1); }\n  .dijitDialog div.track {\n    position: absolute;\n    left: 0px;\n    width: 100%;\n    padding: 0;\n    margin: 0;\n    z-index: 0;\n    border-top: 1px solid #fafafa;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .dijitDialog div.pin_underlay {\n    width: 100%;\n    position: absolute;\n    background: white;\n    z-index: 6;\n    -moz-box-shadow: 0 0 10px 0 rgba(30, 30, 50, 0.9);\n    -webkit-box-shadow: 0 0 10px 0 rgba(30, 30, 50, 0.9);\n    box-shadow: 0 0 10px 0 rgba(30, 30, 50, 0.9); }\n  .dijitDialog div.track.pinned {\n    z-index: 20; }\n  .dijitDialog .track.dojoDndItemOver {\n    cursor: inherit;\n    background: inherit; }\n  .dijitDialog .track.dojoDndItemAnchor {\n    background: inherit; }\n  .dijitDialog .track.dojoDndItemSelected {\n    background: inherit; }\n  .dijitDialog .track.dojoDndItemBefore {\n    border-top: 3px solid #999;\n    margin-top: -3px; }\n  .dijitDialog .track.dojoDndItemAfter {\n    border-bottom: 3px solid #999;\n    margin-bottom: -3px; }\n  .dijitDialog div#static_track {\n    top: 0px;\n    position: absolute;\n    background: #FAFAFA url("+n(i(640))+') repeat-x top left;\n    border-top: 1px solid #999;\n    border-bottom: 1px solid #444;\n    z-index: 20; }\n  .dijitDialog div.gridline {\n    position: absolute;\n    left: 0px;\n    top: 0px;\n    width: 0px;\n    height: 100%;\n    border-style: none none none solid;\n    border-width: 1px;\n    border-color: red;\n    z-index: 0; }\n  .dijitDialog div.gridline_major {\n    border-color: #bbb; }\n  .dijitDialog div.gridline_minor {\n    border-color: #eee; }\n  .dijitDialog div.pos-label {\n    position: absolute;\n    left: -0.35em;\n    top: 0px;\n    z-index: 100;\n    font-family: sans-serif; }\n  .dijitDialog div.overview-pos {\n    position: absolute;\n    left: 0px;\n    top: 0.27em;\n    color: black;\n    padding-left: 4px;\n    font-family: sans-serif;\n    border: 0;\n    z-index: 10; }\n  .dijitDialog div.overview-pos:first-child {\n    margin-left: 1px; }\n  .dijitDialog div.blank-block {\n    font-family: sans-serif;\n    position: absolute;\n    overflow: visible;\n    top: 0px;\n    height: 100%;\n    background-color: white;\n    z-index: 19; }\n  .dijitDialog div.track-border {\n    background: #eee;\n    width: 100%;\n    height: 2px;\n    top: -8px; }\n  .dijitDialog div.track-label, .dijitDialog div.tracklist-label {\n    z-index: 20;\n    padding: 1px 6px;\n    overflow: hidden;\n    cursor: pointer;\n    border-width: 1px;\n    border-style: solid;\n    border-color: #999;\n    color: #111;\n    font-weight: bold; }\n  .dijitDialog div.tracklist-label {\n    white-space: nowrap;\n    overflow: hidden;\n    margin-top: -1px; }\n  .dijitDialog div.tracklist-label.collapsed {\n    height: 3px;\n    padding: 0;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .dijitDialog .track .loading {\n    background: #fafafa;\n    color: #777;\n    margin: 0;\n    font-weight: bold;\n    height: 100%;\n    width: 100%;\n    z-index: 15;\n    position: absolute; }\n  .dijitDialog .track .loading .text {\n    display: inline;\n    line-height: 40px;\n    margin: 1em; }\n  .dijitDialog div.track-label {\n    color: black;\n    margin: -1px 0 0 -1px;\n    overflow: visible;\n    background: white;\n    padding: 0 5px;\n    height: 23px;\n    line-height: 23px;\n    z-index: 20;\n    border-color: #eee;\n    opacity: 0.7;\n    /* setting white-space to "nowrap" prevents Chrome-specific bug with\n       label text sometimes disappearing after zoom in Chrome was\n       wrapping track-label text to next line, which falls outside of\n       track-label fixed height and therefore not seen. see chromium\n       bug report for more details on underlying issue:\n       http://code.google.com/p/chromium/issues/detail?id=138918\n    */\n    white-space: nowrap; }\n  .dijitDialog div.track-label .track-label-text {\n    display: inline-block;\n    white-space: nowrap; }\n  .dijitDialog div.track-label .track-close-button {\n    display: inline-block;\n    vertical-align: top;\n    position: relative;\n    top: 50%;\n    height: 20px;\n    width: 25px;\n    margin: -10px -3px -4px -6px; }\n  .dijitDialog div.track-label .track-menu-button {\n    display: inline-block;\n    position: relative;\n    vertical-align: top;\n    right: -5px;\n    top: 0px;\n    width: 24px;\n    height: 100%;\n    border-radius: 0 6px 6px 0;\n    border-left: 1px inset transparent; }\n  .dijitDialog div.track-label .feature-density {\n    font-size: 90%;\n    font-weight: normal; }\n  .dijitDialog div.track-label:hover .track-menu-button div {\n    height: 8px;\n    width: 8px;\n    position: absolute;\n    left: 8px;\n    top: 7px;\n    background: url('+n(i(868))+") no-repeat -28px 0; }\n  .dijitDialog div.track-label:hover .track-menu-button:hover {\n    background-color: rgba(0, 0, 100, 0.05);\n    border-left-color: #ccc; }\n  .dijitDialog div.track-label .track-close-button {\n    background: url("+n(i(785))+") no-repeat 40% 50%; }\n  .dijitDialog div.track-label .track-close-button:hover {\n    background-image: url("+n(i(786))+"); }\n  .dijitDialog div.track-label:hover .track-menu-button:hover div {\n    background-position-x: 0px; }\n  .dijitDialog div.track-label:hover {\n    background: #FAFAFA url("+n(i(640))+") repeat-x top left;\n    border-width: 1px;\n    border-color: #666;\n    border-color: black;\n    background-color: #ddd;\n    opacity: 1.0; }\n  .dijitDialog div.tracklist-label {\n    padding: 3px;\n    background-color: #ddd;\n    background-color: rgba(220, 220, 220, 0.9); }\n  .dijitDialog div.tracklist-label:hover {\n    background-color: #396494;\n    border: 1px solid black; }\n  .dijitDialog div.tracklist-container.dojoDndItemSelected {\n    background-color: #396494;\n    background-color: #6e849c; }\n  .dijitDialog div.tracklist-container.dojoDndItemSelected .tracklist-label {\n    background-color: #b2c3d6; }\n  .dijitDialog .jbrowseSimpleTrackSelector {\n    background: #f2f2f2;\n    background-image: url("+n(i(1030))+");\n    background-repeat: repeat-y;\n    background-position: right; }\n  .dijitDialog .jbrowseSimpleTrackSelector h2 {\n    margin: 0.5em 0 0 0.5em; }\n  .dijitDialog div.textfilter {\n    margin: 0.5em 0 1em 0.3em; }\n  .dijitDialog div.textfilter input {\n    padding: 2px 0 2px 18px;\n    width: 100%;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .dijitDialog div.textfilter > div.jbrowseIconCancel {\n    position: absolute;\n    left: 5px;\n    margin-top: -6px;\n    top: 50%; }\n  .dijitDialog #trackPane_splitter {\n    background: #dcdcdc;\n    width: 5px;\n    border-right: 1px solid #555; }\n  .dijitDialog div.tracklist-container {\n    padding: 0 4px; }\n  .dijitDialog .tracklist-container.dojoDndItemBefore {\n    border-top: 3px solid #999;\n    padding-top: 2px; }\n  .dijitDialog .tracklist-container.dojoDndItemAfter {\n    border-bottom: 3px solid #999;\n    padding-bottom: 2px; }\n  .dijitDialog .feature-label {\n    position: absolute;\n    border: 0px;\n    margin: -2px 0px 0px 0px;\n    /* padding: 0px 0px 2px 0px; for more space below labels */\n    padding: 0px 0px 0px 0px;\n    /* font-size: 80%; */\n    white-space: nowrap;\n    z-index: 12;\n    cursor: pointer; }\n  .dijitDialog a.feature-label {\n    color: black; }\n  .dijitDialog .feature-description {\n    color: blue;\n    margin-top: -0.2em; }\n  .dijitDialog .feature-label.highlighted {\n    background: rgba(255, 255, 0, 0.7);\n    font-weight: bold;\n    border: 1px solid red;\n    padding: 0 2px; }\n  .dijitDialog .rubber-highlight {\n    border: 1px solid black;\n    height: 100%;\n    border-color: rgba(0, 0, 0, 0.6);\n    background-color: #8087ff;\n    background-color: rgba(128, 136, 255, 0.6);\n    padding: 0;\n    margin: 0;\n    overflow: hidden;\n    cursor: crosshair; }\n  .dijitDialog .rubber-highlight div {\n    color: white;\n    padding: 0;\n    margin-top: 30px;\n    font-size: 160%;\n    text-align: center;\n    font-weight: bold;\n    text-shadow: #6374AB 1px 1px 0; }\n  .dijitDialog div.overview .rubber-highlight {\n    font-size: 0;\n    height: 100%;\n    border-top: none;\n    border-bottom: none; }\n  .dijitDialog div.overview .rubber-highlight * {\n    display: none; }\n  .dijitDialog .icon.nav {\n    height: 30px !important; }\n  .dijitDialog #moveLeft, .dijitDialog #moveRight, .dijitDialog #bigZoomOut, .dijitDialog #zoomOut, .dijitDialog #bigZoomIn, .dijitDialog #zoomIn, .dijitDialog #moveLeftSmall, .dijitDialog #moveRightSmall, .dijitDialog #zoomInSmall, .dijitDialog #zoomOutSmall {\n    background: url("+n(i(1031))+") top left no-repeat;\n    background-size: 50px 280px;\n    cursor: pointer; }\n  .dijitDialog #moveLeft {\n    background-position: 5px -35px;\n    width: 55px; }\n  .dijitDialog #moveLeftSmall {\n    background-position: 0px -200px;\n    height: 20px !important;\n    width: 33px; }\n  .dijitDialog #moveRight {\n    background-position: 0px -135px;\n    width: 55px; }\n  .dijitDialog #moveRightSmall {\n    background-position: 0px -220px;\n    height: 20px !important;\n    width: 33px; }\n  .dijitDialog #bigZoomOut {\n    background-position: 0px -168px;\n    width: 35px; }\n  .dijitDialog #zoomOut {\n    background-position: 0px -100px;\n    width: 30px; }\n  .dijitDialog #zoomOutSmall {\n    background-position: 0px -240px;\n    height: 20px !important;\n    width: 20px; }\n  .dijitDialog #bigZoomIn {\n    background-position: 0px -69px;\n    width: 35px; }\n  .dijitDialog #zoomIn {\n    background-position: 0px -2.5px;\n    width: 30px; }\n  .dijitDialog #zoomInSmall {\n    background-position: 0px -260px;\n    height: 20px !important;\n    width: 20px; }\n  .dijitDialog input.nav {\n    font-size: 9px !important; }\n  .dijitDialog .fatal_error {\n    font-size: 14px;\n    margin: 1em; }\n  .dijitDialog div.error, .dijitDialog div.message {\n    margin: 1px 1em;\n    padding: 2px 6px;\n    border: 1px outset rgba(0, 0, 0, 0.3); }\n  .dijitDialog div.error {\n    background: #ff8888; }\n  .dijitDialog div.track > div.error {\n    width: 30em;\n    position: absolute; }\n  .dijitDialog div.error h2 {\n    margin-top: 0; }\n  .dijitDialog div.error .codecaption {\n    font-size: 90%;\n    font-weight: bold;\n    margin-top: 1em;\n    margin-left: 0.2em; }\n  .dijitDialog div.error code {\n    display: block;\n    font-size: 10px;\n    padding: 0.4em 1.2em;\n    margin: 0 0.3em 0.3em 0.3em;\n    overflow: auto;\n    max-height: 6em; }\n  .dijitDialog div.message {\n    background: #eee; }\n  .dijitDialog div.block > div.message {\n    margin: 1em 0;\n    position: absolute; }\n  .dijitDialog div.block:hover > div.message {\n    z-index: 30000; }\n  .dijitDialog .sharePane input {\n    padding: 1px 0 2px 1px; }\n  .dijitDialog .sharePane .copyReminder {\n    background-color: #396494;\n    text-align: center;\n    width: 50%;\n    margin: 0 auto;\n    color: white;\n    padding: 2px;\n    font-weight: bold; }\n  .dijitDialog .sharePane input {\n    border: 1px solid #ccc; }\n  .dijitDialog .basePairLabel {\n    color: black;\n    position: fixed;\n    font-weight: bold;\n    font-size: 9px;\n    display: none;\n    background: #fefefe;\n    padding: 0 0.7em;\n    z-index: 1000;\n    text-align: center;\n    cursor: crosshair;\n    border: 1px solid #888; }\n  .dijitDialog .basePairLabel.rubber {\n    z-index: 25; }\n  .dijitDialog .trackVerticalPositionIndicatorMain {\n    position: fixed;\n    display: none;\n    cursor: crosshair;\n    left: -2px;\n    height: 100%;\n    width: 1px;\n    background-color: #FF0000;\n    z-index: 15;\n    top: 0; }\n  .dijitDialog .baseQuality {\n    font-family: Courier New, monospace; }\n  .dijitDialog table.baseQuality {\n    margin-bottom: 1em; }\n  .dijitDialog table.baseQuality td {\n    padding: 0 0.2em;\n    line-height: 0.95;\n    text-align: center; }\n  .dijitDialog .baseQuality .basePosition {\n    display: inline-block;\n    padding: 0 0.3em 0.4em 0.3em; }\n  .dijitDialog .baseQuality .basePosition:hover {\n    background: #ccc; }\n  .dijitDialog .baseQuality span.seq {\n    display: block;\n    text-align: center;\n    font-weight: bold; }\n  .dijitDialog .baseQuality span.qual {\n    display: block;\n    text-align: center; }\n\n/* main application CSS styles */\n.jbrowse {\n  line-height: 1;\n  /* styles for the autocomplete menu */\n  /* NOTE: browsers that don't support rgba colors will fall back to all\n   track labels being #bcbcbc */\n  /* styles for feature labels */\n  /*styles for vertical line and BP label*/\n  /* styles for per-base quality table in alignment detail pages */\n  /*\n  NOTES ON STYLING FEATURES:\n     - avoid using any margins in feature styles. Layout is done\n       by JBrowse.\n\n     - when possible, make all element heights an odd number of\n       pixels, so that vertical centering is possible with\n       pixel-perfect accuracy.\n*/\n  /* introns are hidden by default */\n  /* can also set a class of 'hidden' to hide something */\n  /* floating score display for wiggle tracks */\n  /* colors for bases must be specified as hex or rgb/hsl strings, no named colors such as 'red' */\n  /* added to document.body */\n  /* Extracted from https://github.com/#008000ify/msa-colorschemes/tree/master/src */\n  /* styles for the top menu bar */\n  /* dataset selector */\n  /* \n    navbar/toolbar styles\n    Created on : Jun 19, 2015, 6:37:30 PM\n    Author     : Eric Y\n*/\n  /* location box */\n  /* highlight button */\n  /* TriStateCheckBox\n *\n * Styling TriStateCheckBox mainly includes:\n *\n * 1. Containers\n * \t\t.dojoxTriStateCheckBox|.dojoxTriStateCheckBoxIcon - for border, padding, width|height and background image\n *\n * 2. Checked state\n * \t\t.dojoxTriStateCheckBoxChecked - for checked background-color|image\n * \t\t.dojoxTriStateCheckBoxMixed - for mixed background-color|image\n *\n * 3. Hover state\n * \t\t.dojoxTriStateCheckBoxHover|.dojoxTriStateCheckBoxCheckedHover|.dojoxTriStateCheckBoxMixedHover - for background image\n *\n * 4. Disabled state\n * \t\t.dojoxTriStateCheckBoxDisabled|.dojoxTriStateCheckBoxCheckedDisabled|.dojoxTriStateCheckBoxMixedDisabled - for background image\n */\n  /* CSS styles for the various types of feature glyphs */\n  /* Dojo and Dijit stuff */\n  /* JBrowse stuff */\n  /* CSS styles specifically for MAKER output */\n  /*MAKER CSS with colors for common features*/\n  /*SNAP*/\n  /*Augustus*/\n  /*GeneMark*/\n  /*FGENESH*/\n  /*protein2genome*/\n  /*BLASTN*/\n  /*BLASTX*/\n  /*TBLASTX*/\n  /*est2genome*/\n  /*repeat*/\n  /*cdna2genome*/ }\n  .jbrowse.dijitDialog {\n    line-height: 17px; }\n  .jbrowse .jbrowseStandaloneDatasetSelector {\n    margin-left: 2em;\n    font-size: 120%; }\n  .jbrowse .track .global_highlight {\n    position: absolute;\n    background: rgba(255, 255, 0, 0.7);\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box;\n    border: 1px solid #ffb20d;\n    border-width: 0; }\n  .jbrowse .track .global_highlight.left {\n    border-left-width: 1px; }\n  .jbrowse .track .global_highlight.right {\n    border-right-width: 1px; }\n  .jbrowse .track .global_highlight_mod {\n    position: absolute;\n    background: rgba(255, 255, 0, 0.7);\n    box-sizing: border-box;\n    border: 1px solid black;\n    border-width: 0; }\n  .jbrowse .track .global_highlight_mod.left {\n    border-left-width: 1px; }\n  .jbrowse .track .global_highlight_mod.right {\n    border-right-width: 1px; }\n  .jbrowse input {\n    outline: none; }\n  .jbrowse .ghosted {\n    color: #aaa; }\n  .jbrowse fieldset {\n    padding-left: 1em;\n    margin: 0.7em 0.5em; }\n  .jbrowse fieldset > legend {\n    font-weight: bold;\n    margin-left: -1em; }\n  .jbrowse .locString {\n    font-family: Courier New,monospace; }\n  .jbrowse .fasta {\n    font-family: Courier New,monospace;\n    font-size: 14px; }\n  .jbrowse .verticaltext {\n    transform: rotate(-90deg);\n    position: absolute;\n    border: 1px solid black; }\n  .jbrowse .horizontaltext {\n    position: absolute;\n    border: 1px solid black; }\n  .jbrowse .dijitComboBoxMenu .locString, .jbrowse .dijitComboBoxMenu .multipleLocations {\n    margin-left: 1em; }\n  .jbrowse .dijitComboBoxMenu .multipleLocations {\n    color: #333; }\n  .jbrowse .nav {\n    vertical-align: middle;\n    z-index: 10; }\n  .jbrowse input.icon {\n    display: -moz-inline-stack;\n    display: inline-block;\n    zoom: 1; }\n  .jbrowse div.container {\n    position: absolute;\n    z-index: 0; }\n  .jbrowse div.dragWindow {\n    position: absolute;\n    overflow: hidden;\n    z-index: 1; }\n  .jbrowse div.vertical_scrollbar {\n    width: 6px;\n    background: #eee;\n    background: rgba(235, 235, 235, 0.62);\n    border-left: 1px solid #DDD9D9; }\n  .jbrowse div.vertical_scrollbar .vertical_position_marker {\n    background: #555;\n    opacity: 0.8;\n    border-radius: 5px;\n    width: 100%;\n    border-right: 1px solid #ccc; }\n  .jbrowse .draggable {\n    cursor: move; }\n  .jbrowse .rubberBandAvailable {\n    cursor: crosshair; }\n  .jbrowse #navbox {\n    padding-top: 3px;\n    position: relative;\n    text-align: center; }\n    .jbrowse #navbox * {\n      font-size: 12px;\n      font-family: sans-serif; }\n    .jbrowse #navbox .dijitButton, .jbrowse #navbox .dijitToggleButton, .jbrowse #navbox .dijitTextBox, .jbrowse #navbox .dijitSelect, .jbrowse #navbox .dojoxTriStateCheckBox {\n      height: 20px;\n      box-sizing: border-box;\n      -moz-box-sizing: border-box;\n      -webkit-box-sizing: border-box;\n      -ms-box-sizing: border-box; }\n    .jbrowse #navbox .dijitSelectLabel {\n      padding: 0 2px; }\n    .jbrowse #navbox .dijitInputField {\n      padding-left: 3%; }\n    .jbrowse #navbox .dijitArrowButton {\n      width: 15px; }\n  .jbrowse .moreMatches {\n    font-style: italic;\n    color: #aaa; }\n  .jbrowse .moreMatches.dijitMenuItemSelected {\n    background: none;\n    color: #ccc;\n    cursor: default; }\n  .jbrowse div.locationTrapContainer {\n    position: absolute;\n    z-index: -11;\n    height: 100%;\n    width: 100%;\n    top: 0;\n    left: 0;\n    background-color: white; }\n  .jbrowse div.locationTrap {\n    position: absolute;\n    z-index: -10;\n    height: 0;\n    top: 0;\n    left: 0;\n    border-color: transparent;\n    border-style: solid;\n    border-bottom-color: #A9C6EB;\n    border-top: 0px dotted transparent;\n    box-sizing: content-box; }\n  .jbrowse div.locationThumb {\n    position: absolute;\n    top: 0px;\n    /* if you change this border from 2px, change GenomeView.showTrap */\n    border: 2px solid red;\n    margin: 0px -2px 0px -2px;\n    height: 23px;\n    cursor: move;\n    background: rgba(0, 121, 245, 0.1); }\n  .jbrowse div.locationThumb.dojoMoveItem {\n    cursor: move; }\n  .jbrowse div.topLink {\n    position: absolute;\n    right: 0;\n    top: 0;\n    z-index: 50;\n    background: white;\n    border: 1px solid #888;\n    border-width: 0 0 1px 1px; }\n  .jbrowse a.topLink {\n    padding: 0 0.5ex 0 0.5ex;\n    text-decoration: none;\n    color: blue; }\n  .jbrowse div.overview {\n    position: relative;\n    width: 100%;\n    padding: 0;\n    z-index: -5;\n    display: block;\n    height: 23px;\n    background: #FAFAFA url("+n(i(640))+") repeat-x top left;\n    border-style: solid;\n    border-width: 1px 0px 1px 0px;\n    border-color: #555;\n    color: #aaa;\n    text-align: center;\n    cursor: crosshair; }\n  .jbrowse div.block {\n    position: absolute;\n    overflow: visible;\n    top: 0px;\n    height: 100%; }\n  .jbrowse div.block.height_overflow .height_overflow_message {\n    position: absolute;\n    color: #4d4d4d;\n    border-bottom: 2px solid #4d4d4d;\n    text-shadow: white 0px 0px 1px;\n    white-space: nowrap;\n    width: 100%;\n    font-weight: bold;\n    text-align: center;\n    z-index: 2000;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .jbrowse div.block.timed_out {\n    background: #ddd;\n    background: rgba(0, 0, 0, 0.1); }\n  .jbrowse div.track {\n    position: absolute;\n    left: 0px;\n    width: 100%;\n    padding: 0;\n    margin: 0;\n    z-index: 0;\n    border-top: 1px solid #fafafa;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .jbrowse div.pin_underlay {\n    width: 100%;\n    position: absolute;\n    background: white;\n    z-index: 6;\n    -moz-box-shadow: 0 0 10px 0 rgba(30, 30, 50, 0.9);\n    -webkit-box-shadow: 0 0 10px 0 rgba(30, 30, 50, 0.9);\n    box-shadow: 0 0 10px 0 rgba(30, 30, 50, 0.9); }\n  .jbrowse div.track.pinned {\n    z-index: 20; }\n  .jbrowse .track.dojoDndItemOver {\n    cursor: inherit;\n    background: inherit; }\n  .jbrowse .track.dojoDndItemAnchor {\n    background: inherit; }\n  .jbrowse .track.dojoDndItemSelected {\n    background: inherit; }\n  .jbrowse .track.dojoDndItemBefore {\n    border-top: 3px solid #999;\n    margin-top: -3px; }\n  .jbrowse .track.dojoDndItemAfter {\n    border-bottom: 3px solid #999;\n    margin-bottom: -3px; }\n  .jbrowse div#static_track {\n    top: 0px;\n    position: absolute;\n    background: #FAFAFA url("+n(i(640))+') repeat-x top left;\n    border-top: 1px solid #999;\n    border-bottom: 1px solid #444;\n    z-index: 20; }\n  .jbrowse div.gridline {\n    position: absolute;\n    left: 0px;\n    top: 0px;\n    width: 0px;\n    height: 100%;\n    border-style: none none none solid;\n    border-width: 1px;\n    border-color: red;\n    z-index: 0; }\n  .jbrowse div.gridline_major {\n    border-color: #bbb; }\n  .jbrowse div.gridline_minor {\n    border-color: #eee; }\n  .jbrowse div.pos-label {\n    position: absolute;\n    left: -0.35em;\n    top: 0px;\n    z-index: 100;\n    font-family: sans-serif; }\n  .jbrowse div.overview-pos {\n    position: absolute;\n    left: 0px;\n    top: 0.27em;\n    color: black;\n    padding-left: 4px;\n    font-family: sans-serif;\n    border: 0;\n    z-index: 10; }\n  .jbrowse div.overview-pos:first-child {\n    margin-left: 1px; }\n  .jbrowse div.blank-block {\n    font-family: sans-serif;\n    position: absolute;\n    overflow: visible;\n    top: 0px;\n    height: 100%;\n    background-color: white;\n    z-index: 19; }\n  .jbrowse div.track-border {\n    background: #eee;\n    width: 100%;\n    height: 2px;\n    top: -8px; }\n  .jbrowse div.track-label, .jbrowse div.tracklist-label {\n    z-index: 20;\n    padding: 1px 6px;\n    overflow: hidden;\n    cursor: pointer;\n    border-width: 1px;\n    border-style: solid;\n    border-color: #999;\n    color: #111;\n    font-weight: bold; }\n  .jbrowse div.tracklist-label {\n    white-space: nowrap;\n    overflow: hidden;\n    margin-top: -1px; }\n  .jbrowse div.tracklist-label.collapsed {\n    height: 3px;\n    padding: 0;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .jbrowse .track .loading {\n    background: #fafafa;\n    color: #777;\n    margin: 0;\n    font-weight: bold;\n    height: 100%;\n    width: 100%;\n    z-index: 15;\n    position: absolute; }\n  .jbrowse .track .loading .text {\n    display: inline;\n    line-height: 40px;\n    margin: 1em; }\n  .jbrowse div.track-label {\n    color: black;\n    margin: -1px 0 0 -1px;\n    overflow: visible;\n    background: white;\n    padding: 0 5px;\n    height: 23px;\n    line-height: 23px;\n    z-index: 20;\n    border-color: #eee;\n    opacity: 0.7;\n    /* setting white-space to "nowrap" prevents Chrome-specific bug with\n       label text sometimes disappearing after zoom in Chrome was\n       wrapping track-label text to next line, which falls outside of\n       track-label fixed height and therefore not seen. see chromium\n       bug report for more details on underlying issue:\n       http://code.google.com/p/chromium/issues/detail?id=138918\n    */\n    white-space: nowrap; }\n  .jbrowse div.track-label .track-label-text {\n    display: inline-block;\n    white-space: nowrap; }\n  .jbrowse div.track-label .track-close-button {\n    display: inline-block;\n    vertical-align: top;\n    position: relative;\n    top: 50%;\n    height: 20px;\n    width: 25px;\n    margin: -10px -3px -4px -6px; }\n  .jbrowse div.track-label .track-menu-button {\n    display: inline-block;\n    position: relative;\n    vertical-align: top;\n    right: -5px;\n    top: 0px;\n    width: 24px;\n    height: 100%;\n    border-radius: 0 6px 6px 0;\n    border-left: 1px inset transparent; }\n  .jbrowse div.track-label .feature-density {\n    font-size: 90%;\n    font-weight: normal; }\n  .jbrowse div.track-label:hover .track-menu-button div {\n    height: 8px;\n    width: 8px;\n    position: absolute;\n    left: 8px;\n    top: 7px;\n    background: url('+n(i(868))+") no-repeat -28px 0; }\n  .jbrowse div.track-label:hover .track-menu-button:hover {\n    background-color: rgba(0, 0, 100, 0.05);\n    border-left-color: #ccc; }\n  .jbrowse div.track-label .track-close-button {\n    background: url("+n(i(785))+") no-repeat 40% 50%; }\n  .jbrowse div.track-label .track-close-button:hover {\n    background-image: url("+n(i(786))+"); }\n  .jbrowse div.track-label:hover .track-menu-button:hover div {\n    background-position-x: 0px; }\n  .jbrowse div.track-label:hover {\n    background: #FAFAFA url("+n(i(640))+") repeat-x top left;\n    border-width: 1px;\n    border-color: #666;\n    border-color: black;\n    background-color: #ddd;\n    opacity: 1.0; }\n  .jbrowse div.tracklist-label {\n    padding: 3px;\n    background-color: #ddd;\n    background-color: rgba(220, 220, 220, 0.9); }\n  .jbrowse div.tracklist-label:hover {\n    background-color: #396494;\n    border: 1px solid black; }\n  .jbrowse div.tracklist-container.dojoDndItemSelected {\n    background-color: #396494;\n    background-color: #6e849c; }\n  .jbrowse div.tracklist-container.dojoDndItemSelected .tracklist-label {\n    background-color: #b2c3d6; }\n  .jbrowse .jbrowseSimpleTrackSelector {\n    background: #f2f2f2;\n    background-image: url("+n(i(1030))+");\n    background-repeat: repeat-y;\n    background-position: right; }\n  .jbrowse .jbrowseSimpleTrackSelector h2 {\n    margin: 0.5em 0 0 0.5em; }\n  .jbrowse div.textfilter {\n    margin: 0.5em 0 1em 0.3em; }\n  .jbrowse div.textfilter input {\n    padding: 2px 0 2px 18px;\n    width: 100%;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .jbrowse div.textfilter > div.jbrowseIconCancel {\n    position: absolute;\n    left: 5px;\n    margin-top: -6px;\n    top: 50%; }\n  .jbrowse #trackPane_splitter {\n    background: #dcdcdc;\n    width: 5px;\n    border-right: 1px solid #555; }\n  .jbrowse div.tracklist-container {\n    padding: 0 4px; }\n  .jbrowse .tracklist-container.dojoDndItemBefore {\n    border-top: 3px solid #999;\n    padding-top: 2px; }\n  .jbrowse .tracklist-container.dojoDndItemAfter {\n    border-bottom: 3px solid #999;\n    padding-bottom: 2px; }\n  .jbrowse .feature-label {\n    position: absolute;\n    border: 0px;\n    margin: -2px 0px 0px 0px;\n    /* padding: 0px 0px 2px 0px; for more space below labels */\n    padding: 0px 0px 0px 0px;\n    /* font-size: 80%; */\n    white-space: nowrap;\n    z-index: 12;\n    cursor: pointer; }\n  .jbrowse a.feature-label {\n    color: black; }\n  .jbrowse .feature-description {\n    color: blue;\n    margin-top: -0.2em; }\n  .jbrowse .feature-label.highlighted {\n    background: rgba(255, 255, 0, 0.7);\n    font-weight: bold;\n    border: 1px solid red;\n    padding: 0 2px; }\n  .jbrowse .rubber-highlight {\n    border: 1px solid black;\n    height: 100%;\n    border-color: rgba(0, 0, 0, 0.6);\n    background-color: #8087ff;\n    background-color: rgba(128, 136, 255, 0.6);\n    padding: 0;\n    margin: 0;\n    overflow: hidden;\n    cursor: crosshair; }\n  .jbrowse .rubber-highlight div {\n    color: white;\n    padding: 0;\n    margin-top: 30px;\n    font-size: 160%;\n    text-align: center;\n    font-weight: bold;\n    text-shadow: #6374AB 1px 1px 0; }\n  .jbrowse div.overview .rubber-highlight {\n    font-size: 0;\n    height: 100%;\n    border-top: none;\n    border-bottom: none; }\n  .jbrowse div.overview .rubber-highlight * {\n    display: none; }\n  .jbrowse .icon.nav {\n    height: 30px !important; }\n  .jbrowse #moveLeft, .jbrowse #moveRight, .jbrowse #bigZoomOut, .jbrowse #zoomOut, .jbrowse #bigZoomIn, .jbrowse #zoomIn, .jbrowse #moveLeftSmall, .jbrowse #moveRightSmall, .jbrowse #zoomInSmall, .jbrowse #zoomOutSmall {\n    background: url("+n(i(1031))+") top left no-repeat;\n    background-size: 50px 280px;\n    cursor: pointer; }\n  .jbrowse #moveLeft {\n    background-position: 5px -35px;\n    width: 55px; }\n  .jbrowse #moveLeftSmall {\n    background-position: 0px -200px;\n    height: 20px !important;\n    width: 33px; }\n  .jbrowse #moveRight {\n    background-position: 0px -135px;\n    width: 55px; }\n  .jbrowse #moveRightSmall {\n    background-position: 0px -220px;\n    height: 20px !important;\n    width: 33px; }\n  .jbrowse #bigZoomOut {\n    background-position: 0px -168px;\n    width: 35px; }\n  .jbrowse #zoomOut {\n    background-position: 0px -100px;\n    width: 30px; }\n  .jbrowse #zoomOutSmall {\n    background-position: 0px -240px;\n    height: 20px !important;\n    width: 20px; }\n  .jbrowse #bigZoomIn {\n    background-position: 0px -69px;\n    width: 35px; }\n  .jbrowse #zoomIn {\n    background-position: 0px -2.5px;\n    width: 30px; }\n  .jbrowse #zoomInSmall {\n    background-position: 0px -260px;\n    height: 20px !important;\n    width: 20px; }\n  .jbrowse input.nav {\n    font-size: 9px !important; }\n  .jbrowse .fatal_error {\n    font-size: 14px;\n    margin: 1em; }\n  .jbrowse div.error, .jbrowse div.message {\n    margin: 1px 1em;\n    padding: 2px 6px;\n    border: 1px outset rgba(0, 0, 0, 0.3); }\n  .jbrowse div.error {\n    background: #ff8888; }\n  .jbrowse div.track > div.error {\n    width: 30em;\n    position: absolute; }\n  .jbrowse div.error h2 {\n    margin-top: 0; }\n  .jbrowse div.error .codecaption {\n    font-size: 90%;\n    font-weight: bold;\n    margin-top: 1em;\n    margin-left: 0.2em; }\n  .jbrowse div.error code {\n    display: block;\n    font-size: 10px;\n    padding: 0.4em 1.2em;\n    margin: 0 0.3em 0.3em 0.3em;\n    overflow: auto;\n    max-height: 6em; }\n  .jbrowse div.message {\n    background: #eee; }\n  .jbrowse div.block > div.message {\n    margin: 1em 0;\n    position: absolute; }\n  .jbrowse div.block:hover > div.message {\n    z-index: 30000; }\n  .jbrowse .sharePane input {\n    padding: 1px 0 2px 1px; }\n  .jbrowse .sharePane .copyReminder {\n    background-color: #396494;\n    text-align: center;\n    width: 50%;\n    margin: 0 auto;\n    color: white;\n    padding: 2px;\n    font-weight: bold; }\n  .jbrowse .sharePane input {\n    border: 1px solid #ccc; }\n  .jbrowse .basePairLabel {\n    color: black;\n    position: fixed;\n    font-weight: bold;\n    font-size: 9px;\n    display: none;\n    background: #fefefe;\n    padding: 0 0.7em;\n    z-index: 1000;\n    text-align: center;\n    cursor: crosshair;\n    border: 1px solid #888; }\n  .jbrowse .basePairLabel.rubber {\n    z-index: 25; }\n  .jbrowse .trackVerticalPositionIndicatorMain {\n    position: fixed;\n    display: none;\n    cursor: crosshair;\n    left: -2px;\n    height: 100%;\n    width: 1px;\n    background-color: #FF0000;\n    z-index: 15;\n    top: 0; }\n  .jbrowse .baseQuality {\n    font-family: Courier New, monospace; }\n  .jbrowse table.baseQuality {\n    margin-bottom: 1em; }\n  .jbrowse table.baseQuality td {\n    padding: 0 0.2em;\n    line-height: 0.95;\n    text-align: center; }\n  .jbrowse .baseQuality .basePosition {\n    display: inline-block;\n    padding: 0 0.3em 0.4em 0.3em; }\n  .jbrowse .baseQuality .basePosition:hover {\n    background: #ccc; }\n  .jbrowse .baseQuality span.seq {\n    display: block;\n    text-align: center;\n    font-weight: bold; }\n  .jbrowse .baseQuality span.qual {\n    display: block;\n    text-align: center; }\n  .jbrowse .basic,\n  .jbrowse .plus-basic,\n  .jbrowse .minus-basic {\n    position: absolute;\n    cursor: pointer;\n    z-index: 10;\n    min-width: 1px; }\n  .jbrowse .basicSubfeature {\n    position: absolute;\n    cursor: pointer;\n    z-index: 12;\n    min-width: 1px; }\n  .jbrowse div.hist {\n    position: absolute;\n    z-index: 10;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .jbrowse .feature,\n  .jbrowse .plus-feature,\n  .jbrowse .minus-feature {\n    position: absolute;\n    height: 7px;\n    background-repeat: repeat-x;\n    cursor: pointer;\n    min-width: 1px;\n    z-index: 10;\n    background-color: #2F4F4F;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .jbrowse .plus-feature {\n    background-image: url("+n(i(1424))+"); }\n  .jbrowse .minus-feature {\n    background-image: url("+n(i(1425))+"); }\n  .jbrowse .subfeature,\n  .jbrowse .plus-subfeature,\n  .jbrowse .minus-subfeature {\n    position: absolute;\n    background-color: #2F4F4F;\n    height: 7px;\n    min-width: 1px;\n    z-index: 12;\n    box-sizing: border-box;\n    -moz-box-sizing: border-box;\n    -webkit-box-sizing: border-box;\n    -ms-box-sizing: border-box; }\n  .jbrowse .alignment,\n  .jbrowse .plus-alignment,\n  .jbrowse .minus-alignment {\n    background-color: #ccc;\n    /* these should all 3 match */\n    height: 11px;\n    line-height: 11px;\n    font-size: 11px; }\n  .jbrowse .plus-alignment {\n    background-color: #EC8B8B; }\n  .jbrowse .minus-alignment {\n    background-color: #898FD8; }\n  .jbrowse .alignment.missing_mate, .jbrowse .plus-alignment.missing_mate, .jbrowse .minus-alignment.missing_mate {\n    background-image: url("+n(i(1426))+"); }\n  .jbrowse .alignment > .mismatch, .jbrowse .minus-alignment > .mismatch, .jbrowse .plus-alignment > .mismatch {\n    height: 100%; }\n  .jbrowse .alignment > .deletion, .jbrowse .minus-alignment > .deletion, .jbrowse .plus-alignment > .deletion {\n    background-color: black;\n    height: 100%; }\n  .jbrowse .alignment > .deletion *, .jbrowse .plus-alignment > .deletion *, .jbrowse .minus-alignment > .deletion * {\n    color: white; }\n  .jbrowse .alignment > .insertion, .jbrowse .plus-alignment > .insertion, .jbrowse .minus-alignment > .insertion {\n    background-color: white;\n    color: black;\n    height: 100%; }\n  .jbrowse .alignment > .skip, .jbrowse .plus-alignment > .skip, .jbrowse .minus-alignment > .skip {\n    background: url("+n(i(1032))+") repeat-x 0 50% white;\n    height: 100%;\n    opacity: 0.7; }\n  .jbrowse div.feature-hist {\n    background-color: blue;\n    border-color: #5858C4; }\n  .jbrowse .feature2, .jbrowse .plus-feature2, .jbrowse .minus-feature2 {\n    position: absolute;\n    height: 7px;\n    background-repeat: repeat-x;\n    cursor: pointer;\n    min-width: 1px;\n    z-index: 10;\n    background-color: #62d335; }\n  .jbrowse .Boolean-transparent {\n    opacity: 0.6; }\n  .jbrowse div.feature2-hist {\n    background-color: #9f9;\n    border-color: #ada; }\n  .jbrowse .feature3, .jbrowse .plus-feature3, .jbrowse .minus-feature3 {\n    position: absolute;\n    height: 7px;\n    background-repeat: repeat-x;\n    cursor: pointer;\n    min-width: 1px;\n    z-index: 10;\n    background-color: goldenrod; }\n  .jbrowse div.feature3-hist {\n    background-color: yellow;\n    border-color: black; }\n  .jbrowse .feature4, .jbrowse .plus-feature4, .jbrowse .minus-feature4 {\n    position: absolute;\n    height: 11px;\n    background-repeat: repeat-x;\n    cursor: pointer;\n    min-width: 1px;\n    z-index: 10;\n    background: yellow; }\n  .jbrowse div.feature4-hist {\n    background-color: yellow;\n    border-color: black; }\n  .jbrowse .feature5, .jbrowse .plus-feature5, .jbrowse .minus-feature5 {\n    position: absolute;\n    height: 7px;\n    background-repeat: repeat-x;\n    cursor: pointer;\n    min-width: 1px;\n    z-index: 10;\n    background-color: blue; }\n  .jbrowse div.feature5-hist {\n    background-color: blue;\n    border-color: lightblue; }\n  .jbrowse div.exon-hist {\n    background-color: #4B76E8;\n    border-color: #00f; }\n  .jbrowse .exon,\n  .jbrowse .plus-exon,\n  .jbrowse .minus-exon {\n    position: absolute;\n    height: 7px;\n    background-color: #4B76E8;\n    border-style: solid;\n    border-color: #00f;\n    border-width: 1px;\n    cursor: pointer;\n    z-index: 10; }\n  .jbrowse div.est-hist {\n    background-color: #ED9185;\n    border-color: #c33; }\n  .jbrowse .est,\n  .jbrowse .plus-est,\n  .jbrowse .minus-est {\n    position: absolute;\n    height: 7px;\n    background-color: #ED9185; }\n  .jbrowse .dblhelix,\n  .jbrowse .plus-dblhelix,\n  .jbrowse .minus-dblhelix {\n    position: absolute;\n    height: 11px;\n    background-image: url("+n(i(1427))+");\n    background-repeat: repeat-x;\n    min-width: 1px;\n    cursor: pointer;\n    z-index: 10; }\n  .jbrowse div.dblhelix-hist {\n    background-color: #fcc;\n    border-color: #daa; }\n  .jbrowse .plus-helix,\n  .jbrowse .minus-helix {\n    position: absolute;\n    height: 11px;\n    background-image: url("+n(i(1428))+");\n    background-repeat: repeat-x;\n    min-width: 1px;\n    cursor: pointer;\n    z-index: 10; }\n  .jbrowse div.helix-hist {\n    background-color: #cfc;\n    border-color: #ada; }\n  .jbrowse .loops, .jbrowse .minus-loops, .jbrowse .plus-loops {\n    position: absolute;\n    height: 13px;\n    background-image: url("+n(i(1429))+");\n    background-repeat: repeat-x;\n    cursor: pointer; }\n  .jbrowse .diamonds, .jbrowse .minus-diamonds, .jbrowse .plus-diamonds {\n    position: absolute;\n    height: 13px;\n    background-image: url("+n(i(1430))+");\n    background-repeat: repeat-x;\n    cursor: pointer; }\n  .jbrowse .plus-cds, .jbrowse .minus-cds {\n    position: absolute;\n    height: 13px;\n    background-repeat: repeat-x;\n    cursor: pointer;\n    min-width: 1px; }\n  .jbrowse .plus-cds_phase0 {\n    background-image: url("+n(i(1431))+"); }\n  .jbrowse .plus-cds_phase1 {\n    background-image: url("+n(i(1432))+"); }\n  .jbrowse .plus-cds_phase2 {\n    background-image: url("+n(i(1433))+"); }\n  .jbrowse .minus-cds_phase0 {\n    background-image: url("+n(i(1434))+"); }\n  .jbrowse .minus-cds_phase1 {\n    background-image: url("+n(i(1435))+"); }\n  .jbrowse .minus-cds_phase2 {\n    background-image: url("+n(i(1436))+"); }\n  .jbrowse div.cds-hist {\n    background-color: #fcc;\n    border-color: #daa; }\n  .jbrowse .topbracket {\n    position: absolute;\n    height: 8px;\n    border-style: solid solid none solid;\n    border-width: 2px;\n    border-color: orange;\n    cursor: pointer; }\n  .jbrowse .bottombracket {\n    position: absolute;\n    height: 8px;\n    border-style: none solid solid solid;\n    border-width: 2px;\n    border-color: green;\n    cursor: pointer; }\n  .jbrowse .hourglass, .jbrowse .plus-hourglass, .jbrowse .minus-hourglass {\n    position: absolute;\n    height: 0px;\n    border-style: solid;\n    border-width: 6px 3px 6px 3px;\n    cursor: pointer; }\n  .jbrowse .triangle, .jbrowse .plus-triangle, .jbrowse .minus-triangle {\n    position: absolute;\n    height: 0px;\n    border-style: solid;\n    border-width: 6px 3px 0px 3px;\n    cursor: pointer; }\n  .jbrowse .hgred {\n    border-color: #f99 white #f99 white; }\n  .jbrowse div.hgred-hist {\n    background-color: #daa;\n    border-color: #d44; }\n  .jbrowse .hgblue {\n    border-color: #99f white #99f white; }\n  .jbrowse div.hgblue-hist {\n    background-color: #aad;\n    border-color: #99f; }\n  .jbrowse .ibeam, .jbrowse .plus-ibeam, .jbrowse .minus-ibeam {\n    position: absolute;\n    height: 2px;\n    background-color: blue;\n    border-style: solid;\n    border-width: 8px 4px 8px 4px;\n    border-color: white blue white blue;\n    cursor: pointer;\n    box-sizing: content-box;\n    -moz-box-sizing: content-box;\n    -webkit-box-sizing: content-box;\n    -ms-box-sizing: content-box; }\n  .jbrowse div.transcript-hist {\n    background-color: #ddd;\n    border-color: #FF9185; }\n  .jbrowse .transcript,\n  .jbrowse .plus-transcript,\n  .jbrowse .minus-transcript {\n    position: absolute;\n    height: 11px;\n    background: url("+n(i(1032))+") repeat-x 0 4px white;\n    z-index: 6;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .plus-transcript-arrowhead,\n  .jbrowse .plus-arrowhead {\n    position: absolute;\n    width: 9px;\n    height: 5px;\n    background-image: url("+n(i(1437))+");\n    background-repeat: no-repeat;\n    z-index: 100; }\n  .jbrowse .minus-transcript-arrowhead,\n  .jbrowse .minus-arrowhead {\n    position: absolute;\n    width: 9px;\n    height: 5px;\n    background-image: url("+n(i(1438))+");\n    background-repeat: no-repeat;\n    z-index: 100; }\n  .jbrowse .plus-intron, .jbrowse .minus-intron {\n    display: none; }\n  .jbrowse .hidden, .jbrowse .plus-hidden, .jbrowse .minus-hidden {\n    display: none; }\n  .jbrowse .plus-CDS,\n  .jbrowse .plus-transcript-CDS,\n  .jbrowse .minus-CDS,\n  .jbrowse .minus-transcript-CDS {\n    position: absolute;\n    height: 11px;\n    background: #F09A9A;\n    cursor: pointer;\n    z-index: 10;\n    min-width: 1px; }\n  .jbrowse .plus-exon,\n  .jbrowse .minus-exon,\n  .jbrowse .plus-UTR,\n  .jbrowse .minus-UTR,\n  .jbrowse .plus-five_prime_UTR,\n  .jbrowse .minus-five_prime_UTR,\n  .jbrowse .plus-three_prime_UTR,\n  .jbrowse .minus-three_prime_UTR {\n    position: absolute;\n    height: 7px;\n    background-color: #B66;\n    border-style: solid;\n    border-color: #D88;\n    border-width: 2px 0px 2px 0px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .generic_parent,\n  .jbrowse .plus-generic_parent,\n  .jbrowse .minus-generic_parent {\n    position: absolute;\n    height: 4px;\n    background-color: #AAA;\n    z-index: 6;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse div.generic_parent-hist {\n    background-color: #ddd;\n    border-color: #555; }\n  .jbrowse .match_part,\n  .jbrowse .plus-match_part,\n  .jbrowse .minus-match_part {\n    position: absolute;\n    height: 4px;\n    background-color: #66B;\n    border-style: solid;\n    border-color: #88D;\n    border-width: 2px 0px 2px 0px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .generic_part_a,\n  .jbrowse .plus-generic_part_a,\n  .jbrowse .minus-generic_part_a {\n    position: absolute;\n    height: 4px;\n    background-color: #6B6;\n    border-style: solid;\n    border-color: #8D8;\n    border-width: 2px 0px 2px 0px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .wiggleValueDisplay {\n    border: 1px solid #aaa;\n    padding: 2px;\n    -moz-box-shadow: 4px 4px 10px 2px rgba(80, 80, 80, 0.3);\n    -webkit-box-shadow: 4px 4px 10px 2px rgba(80, 80, 80, 0.3);\n    box-shadow: 4px 4px 10px 2px rgba(80, 80, 80, 0.3); }\n    .jbrowse .wiggleValueDisplay, .jbrowse .wiggleValueDisplay * {\n      background: #FFFEF0;\n      font-family: Courier New, monospace;\n      font-weight: bold;\n      cursor: default; }\n    .jbrowse .wiggleValueDisplay table {\n      border-spacing: 0; }\n      .jbrowse .wiggleValueDisplay table * {\n        border: none; }\n    .jbrowse .wiggleValueDisplay th, .jbrowse .wiggleValueDisplay td {\n      border: none;\n      padding: 0.2em 0.4em; }\n    .jbrowse .wiggleValueDisplay td.count, .jbrowse .wiggleValueDisplay td.pct {\n      text-align: right; }\n    .jbrowse .wiggleValueDisplay tr.total > td {\n      border-top: 1px solid #aaa;\n      font-weight: bold; }\n  .jbrowse .wigglePositionIndicator {\n    background: #333;\n    border: none;\n    width: 1px;\n    cursor: default; }\n  .jbrowse .base {\n    color: black;\n    font-family: Courier New,monospace;\n    font-weight: bold;\n    text-shadow: white 0px 0px 1px; }\n  .jbrowse .base_n {\n    background-color: #C6C6C6; }\n  .jbrowse .base_a {\n    background-color: #00BF00; }\n  .jbrowse .base_c {\n    background-color: #4747ff; }\n  .jbrowse .base_t {\n    background-color: #f00; }\n  .jbrowse .base_g {\n    background-color: #ffa500; }\n  .jbrowse .base_reference {\n    background-color: #bbb; }\n  .jbrowse .base_deletion {\n    background-color: #999; }\n  .jbrowse .sequence.nocolor .base {\n    background-color: #ddd; }\n  .jbrowse .featureTooltip {\n    background: #FFFEF0;\n    border: 1px solid #aaa;\n    padding: 2px;\n    font-family: Courier New, monospace;\n    font-weight: bold;\n    cursor: default;\n    -moz-box-shadow: 4px 4px 10px 2px rgba(80, 80, 80, 0.3);\n    -webkit-box-shadow: 4px 4px 10px 2px rgba(80, 80, 80, 0.3);\n    box-shadow: 4px 4px 10px 2px rgba(80, 80, 80, 0.3); }\n  .jbrowse table.sequence {\n    border-collapse: collapse; }\n  .jbrowse div.sequence_blur {\n    /* background: url('../img/sequence_blur.png') #eee repeat-x; */\n    background: #f5f5f5;\n    background: rgba(50, 50, 50, 0.16);\n    border: 0;\n    color: #575757;\n    height: 31px;\n    font-size: 12px;\n    text-align: center;\n    position: relative; }\n  .jbrowse .sequence_blur > span {\n    top: 50%;\n    position: absolute;\n    width: 100%;\n    display: block;\n    left: 0;\n    margin-top: -8px; }\n  .jbrowse table.sequence .highlighted {\n    background: #ff0; }\n  .jbrowse table.sequence .revcom {\n    color: red; }\n  .jbrowse table.sequence .base, .jbrowse table.sequence > tr, .jbrowse table.translatedSequence > tr, .jbrowse table.translatedSequence {\n    height: 14px;\n    line-height: 14px; }\n  .jbrowse table.sequence.big .base {\n    border-right: 1px solid #333; }\n  .jbrowse .translatedSequence {\n    position: relative;\n    border-width: 0px;\n    border-collapse: collapse;\n    overflow: visible; }\n  .jbrowse .translatedSequence table {\n    z-index: 10; }\n  .jbrowse .translatedSequence.frame0 {\n    background-color: #929292; }\n  .jbrowse .translatedSequence.frame1 {\n    background-color: #B0B0B0; }\n  .jbrowse .translatedSequence.frame2 {\n    background-color: #E0E0E0; }\n  .jbrowse .translatedSequence td.aminoAcid {\n    text-align: center;\n    z-index: 2000;\n    color: black;\n    font-family: Courier New,monospace;\n    font-weight: bold;\n    text-shadow: white 0px 0px 1px; }\n  .jbrowse .translatedSequence.big, .jbrowse .translatedSequence.big td.aminoAcid {\n    border-right: 1px solid #777; }\n  .jbrowse .translatedSequence.frame2 td.aminoAcid {\n    border-right-color: #979797; }\n  .jbrowse .translatedSequence.frame1 td.aminoAcid {\n    border-right-color: #6d6d6d; }\n  .jbrowse .translatedSequence.frame0 td.aminoAcid {\n    border-right-color: #5f5f5f; }\n  .jbrowse .translatedSequence td.aminoAcid_stop {\n    background-color: #FF0000; }\n  .jbrowse .translatedSequence td.aminoAcid_start {\n    background-color: #00FF00; }\n  .jbrowse td.base {\n    text-align: center;\n    z-index: 2000; }\n  .jbrowse .aaScheme_buried.base_a {\n    background-color: #00a35c; }\n  .jbrowse .aaScheme_buried.base_b {\n    background-color: #00eb14; }\n  .jbrowse .aaScheme_buried.base_c {\n    background-color: #0000ff; }\n  .jbrowse .aaScheme_buried.base_d {\n    background-color: #00eb14; }\n  .jbrowse .aaScheme_buried.base_e {\n    background-color: #00f10e; }\n  .jbrowse .aaScheme_buried.base_f {\n    background-color: #008778; }\n  .jbrowse .aaScheme_buried.base_g {\n    background-color: #009d62; }\n  .jbrowse .aaScheme_buried.base_h {\n    background-color: #00d52a; }\n  .jbrowse .aaScheme_buried.base_i {\n    background-color: #0054ab; }\n  .jbrowse .aaScheme_buried.base_k {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_buried.base_l {\n    background-color: #007b84; }\n  .jbrowse .aaScheme_buried.base_m {\n    background-color: #009768; }\n  .jbrowse .aaScheme_buried.base_n {\n    background-color: #00eb14; }\n  .jbrowse .aaScheme_buried.base_p {\n    background-color: #00e01f; }\n  .jbrowse .aaScheme_buried.base_q {\n    background-color: #00f10e; }\n  .jbrowse .aaScheme_buried.base_r {\n    background-color: #00fc03; }\n  .jbrowse .aaScheme_buried.base_s {\n    background-color: #00d52a; }\n  .jbrowse .aaScheme_buried.base_t {\n    background-color: #00db24; }\n  .jbrowse .aaScheme_buried.base_v {\n    background-color: #005fa0; }\n  .jbrowse .aaScheme_buried.base_w {\n    background-color: #00a857; }\n  .jbrowse .aaScheme_buried.base_x {\n    background-color: #00b649; }\n  .jbrowse .aaScheme_buried.base_y {\n    background-color: #00e619; }\n  .jbrowse .aaScheme_buried.base_z {\n    background-color: #00f10e; }\n  .jbrowse .aaScheme_cinema.base_a {\n    background-color: #BBBBBB; }\n  .jbrowse .aaScheme_cinema.base_b {\n    background-color: #808080; }\n  .jbrowse .aaScheme_cinema.base_c {\n    background-color: #ffff00; }\n  .jbrowse .aaScheme_cinema.base_d {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_cinema.base_e {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_cinema.base_f {\n    background-color: #FF00FF; }\n  .jbrowse .aaScheme_cinema.base_g {\n    background-color: #A52A2A; }\n  .jbrowse .aaScheme_cinema.base_h {\n    background-color: #00FFFF; }\n  .jbrowse .aaScheme_cinema.base_i {\n    background-color: #BBBBBB; }\n  .jbrowse .aaScheme_cinema.base_j {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_cinema.base_k {\n    background-color: #00FFFF; }\n  .jbrowse .aaScheme_cinema.base_l {\n    background-color: #BBBBBB; }\n  .jbrowse .aaScheme_cinema.base_m {\n    background-color: #BBBBBB; }\n  .jbrowse .aaScheme_cinema.base_n {\n    background-color: #008000; }\n  .jbrowse .aaScheme_cinema.base_o {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_cinema.base_p {\n    background-color: #A52A2A; }\n  .jbrowse .aaScheme_cinema.base_q {\n    background-color: #008000; }\n  .jbrowse .aaScheme_cinema.base_r {\n    background-color: #00FFFF; }\n  .jbrowse .aaScheme_cinema.base_s {\n    background-color: #008000; }\n  .jbrowse .aaScheme_cinema.base_t {\n    background-color: #008000; }\n  .jbrowse .aaScheme_cinema.base_u {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_cinema.base_v {\n    background-color: #BBBBBB; }\n  .jbrowse .aaScheme_cinema.base_w {\n    background-color: #FF00FF; }\n  .jbrowse .aaScheme_cinema.base_x {\n    background-color: #808080; }\n  .jbrowse .aaScheme_cinema.base_y {\n    background-color: #FF00FF; }\n  .jbrowse .aaScheme_cinema.base_z {\n    background-color: #808080; }\n  .jbrowse .aaScheme_clustal.base_a {\n    background-color: #FFA500; }\n  .jbrowse .aaScheme_clustal.base_b {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_clustal.base_c {\n    background-color: #008000; }\n  .jbrowse .aaScheme_clustal.base_d {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_clustal.base_e {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_clustal.base_f {\n    background-color: #0000FF; }\n  .jbrowse .aaScheme_clustal.base_g {\n    background-color: #FFA500; }\n  .jbrowse .aaScheme_clustal.base_h {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_clustal.base_i {\n    background-color: #008000; }\n  .jbrowse .aaScheme_clustal.base_j {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_clustal.base_k {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_clustal.base_l {\n    background-color: #008000; }\n  .jbrowse .aaScheme_clustal.base_m {\n    background-color: #008000; }\n  .jbrowse .aaScheme_clustal.base_n {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_clustal.base_o {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_clustal.base_p {\n    background-color: #FFA500; }\n  .jbrowse .aaScheme_clustal.base_q {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_clustal.base_r {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_clustal.base_s {\n    background-color: #FFA500; }\n  .jbrowse .aaScheme_clustal.base_t {\n    background-color: #FFA500; }\n  .jbrowse .aaScheme_clustal.base_u {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_clustal.base_v {\n    background-color: #008000; }\n  .jbrowse .aaScheme_clustal.base_w {\n    background-color: #0000FF; }\n  .jbrowse .aaScheme_clustal.base_x {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_clustal.base_y {\n    background-color: #0000FF; }\n  .jbrowse .aaScheme_clustal.base_z {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_clustal2.base_a {\n    background-color: #80a0f0; }\n  .jbrowse .aaScheme_clustal2.base_b {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_clustal2.base_c {\n    background-color: #f08080; }\n  .jbrowse .aaScheme_clustal2.base_d {\n    background-color: #c048c0; }\n  .jbrowse .aaScheme_clustal2.base_e {\n    background-color: #c048c0; }\n  .jbrowse .aaScheme_clustal2.base_f {\n    background-color: #80a0f0; }\n  .jbrowse .aaScheme_clustal2.base_g {\n    background-color: #f09048; }\n  .jbrowse .aaScheme_clustal2.base_h {\n    background-color: #15a4a4; }\n  .jbrowse .aaScheme_clustal2.base_i {\n    background-color: #80a0f0; }\n  .jbrowse .aaScheme_clustal2.base_k {\n    background-color: #f01505; }\n  .jbrowse .aaScheme_clustal2.base_l {\n    background-color: #80a0f0; }\n  .jbrowse .aaScheme_clustal2.base_m {\n    background-color: #80a0f0; }\n  .jbrowse .aaScheme_clustal2.base_n {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_clustal2.base_p {\n    background-color: #ffff00; }\n  .jbrowse .aaScheme_clustal2.base_q {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_clustal2.base_r {\n    background-color: #f01505; }\n  .jbrowse .aaScheme_clustal2.base_s {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_clustal2.base_t {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_clustal2.base_v {\n    background-color: #80a0f0; }\n  .jbrowse .aaScheme_clustal2.base_w {\n    background-color: #80a0f0; }\n  .jbrowse .aaScheme_clustal2.base_x {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_clustal2.base_y {\n    background-color: #15a4a4; }\n  .jbrowse .aaScheme_clustal2.base_z {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_helix.base_a {\n    background-color: #e718e7; }\n  .jbrowse .aaScheme_helix.base_b {\n    background-color: #49b649; }\n  .jbrowse .aaScheme_helix.base_c {\n    background-color: #23dc23; }\n  .jbrowse .aaScheme_helix.base_d {\n    background-color: #778877; }\n  .jbrowse .aaScheme_helix.base_e {\n    background-color: #ff00ff; }\n  .jbrowse .aaScheme_helix.base_f {\n    background-color: #986798; }\n  .jbrowse .aaScheme_helix.base_g {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_helix.base_h {\n    background-color: #758a75; }\n  .jbrowse .aaScheme_helix.base_i {\n    background-color: #8a758a; }\n  .jbrowse .aaScheme_helix.base_k {\n    background-color: #a05fa0; }\n  .jbrowse .aaScheme_helix.base_l {\n    background-color: #ae51ae; }\n  .jbrowse .aaScheme_helix.base_m {\n    background-color: #ef10ef; }\n  .jbrowse .aaScheme_helix.base_n {\n    background-color: #1be41b; }\n  .jbrowse .aaScheme_helix.base_p {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_helix.base_q {\n    background-color: #926d92; }\n  .jbrowse .aaScheme_helix.base_r {\n    background-color: #6f906f; }\n  .jbrowse .aaScheme_helix.base_s {\n    background-color: #36c936; }\n  .jbrowse .aaScheme_helix.base_t {\n    background-color: #47b847; }\n  .jbrowse .aaScheme_helix.base_v {\n    background-color: #857a85; }\n  .jbrowse .aaScheme_helix.base_w {\n    background-color: #8a758a; }\n  .jbrowse .aaScheme_helix.base_x {\n    background-color: #758a75; }\n  .jbrowse .aaScheme_helix.base_y {\n    background-color: #21de21; }\n  .jbrowse .aaScheme_helix.base_z {\n    background-color: #c936c9; }\n  .jbrowse .aaScheme_hydrophobicity.base_a {\n    background-color: #ad0052; }\n  .jbrowse .aaScheme_hydrophobicity.base_b {\n    background-color: #0c00f3; }\n  .jbrowse .aaScheme_hydrophobicity.base_c {\n    background-color: #c2003d; }\n  .jbrowse .aaScheme_hydrophobicity.base_d {\n    background-color: #0c00f3; }\n  .jbrowse .aaScheme_hydrophobicity.base_e {\n    background-color: #0c00f3; }\n  .jbrowse .aaScheme_hydrophobicity.base_f {\n    background-color: #cb0034; }\n  .jbrowse .aaScheme_hydrophobicity.base_g {\n    background-color: #6a0095; }\n  .jbrowse .aaScheme_hydrophobicity.base_h {\n    background-color: #1500ea; }\n  .jbrowse .aaScheme_hydrophobicity.base_i {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_hydrophobicity.base_j {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_hydrophobicity.base_k {\n    background-color: #0000ff; }\n  .jbrowse .aaScheme_hydrophobicity.base_l {\n    background-color: #ea0015; }\n  .jbrowse .aaScheme_hydrophobicity.base_m {\n    background-color: #b0004f; }\n  .jbrowse .aaScheme_hydrophobicity.base_n {\n    background-color: #0c00f3; }\n  .jbrowse .aaScheme_hydrophobicity.base_o {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_hydrophobicity.base_p {\n    background-color: #4600b9; }\n  .jbrowse .aaScheme_hydrophobicity.base_q {\n    background-color: #0c00f3; }\n  .jbrowse .aaScheme_hydrophobicity.base_r {\n    background-color: #0000ff; }\n  .jbrowse .aaScheme_hydrophobicity.base_s {\n    background-color: #5e00a1; }\n  .jbrowse .aaScheme_hydrophobicity.base_t {\n    background-color: #61009e; }\n  .jbrowse .aaScheme_hydrophobicity.base_u {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_hydrophobicity.base_v {\n    background-color: #f60009; }\n  .jbrowse .aaScheme_hydrophobicity.base_w {\n    background-color: #5b00a4; }\n  .jbrowse .aaScheme_hydrophobicity.base_x {\n    background-color: #680097; }\n  .jbrowse .aaScheme_hydrophobicity.base_y {\n    background-color: #4f00b0; }\n  .jbrowse .aaScheme_hydrophobicity.base_z {\n    background-color: #0c00f3; }\n  .jbrowse .aaScheme_lesk.base_a {\n    background-color: #FFA500; }\n  .jbrowse .aaScheme_lesk.base_b {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_lesk.base_c {\n    background-color: #008000; }\n  .jbrowse .aaScheme_lesk.base_d {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_lesk.base_e {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_lesk.base_f {\n    background-color: #008000; }\n  .jbrowse .aaScheme_lesk.base_g {\n    background-color: #FFA500; }\n  .jbrowse .aaScheme_lesk.base_h {\n    background-color: #FF00FF; }\n  .jbrowse .aaScheme_lesk.base_i {\n    background-color: #008000; }\n  .jbrowse .aaScheme_lesk.base_j {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_lesk.base_k {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_lesk.base_l {\n    background-color: #008000; }\n  .jbrowse .aaScheme_lesk.base_m {\n    background-color: #008000; }\n  .jbrowse .aaScheme_lesk.base_n {\n    background-color: #FF00FF; }\n  .jbrowse .aaScheme_lesk.base_o {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_lesk.base_p {\n    background-color: #008000; }\n  .jbrowse .aaScheme_lesk.base_q {\n    background-color: #FF00FF; }\n  .jbrowse .aaScheme_lesk.base_r {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_lesk.base_s {\n    background-color: #FFA500; }\n  .jbrowse .aaScheme_lesk.base_t {\n    background-color: #FFA500; }\n  .jbrowse .aaScheme_lesk.base_u {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_lesk.base_v {\n    background-color: #008000; }\n  .jbrowse .aaScheme_lesk.base_w {\n    background-color: #008000; }\n  .jbrowse .aaScheme_lesk.base_x {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_lesk.base_y {\n    background-color: #008000; }\n  .jbrowse .aaScheme_lesk.base_z {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_mae.base_a {\n    background-color: #77dd88; }\n  .jbrowse .aaScheme_mae.base_b {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_mae.base_c {\n    background-color: #99ee66; }\n  .jbrowse .aaScheme_mae.base_d {\n    background-color: #55bb33; }\n  .jbrowse .aaScheme_mae.base_e {\n    background-color: #55bb33; }\n  .jbrowse .aaScheme_mae.base_f {\n    background-color: #9999ff; }\n  .jbrowse .aaScheme_mae.base_g {\n    background-color: #77dd88; }\n  .jbrowse .aaScheme_mae.base_h {\n    background-color: #5555ff; }\n  .jbrowse .aaScheme_mae.base_i {\n    background-color: #66bbff; }\n  .jbrowse .aaScheme_mae.base_j {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_mae.base_k {\n    background-color: #ffcc77; }\n  .jbrowse .aaScheme_mae.base_l {\n    background-color: #66bbff; }\n  .jbrowse .aaScheme_mae.base_m {\n    background-color: #66bbff; }\n  .jbrowse .aaScheme_mae.base_n {\n    background-color: #55bb33; }\n  .jbrowse .aaScheme_mae.base_o {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_mae.base_p {\n    background-color: #eeaaaa; }\n  .jbrowse .aaScheme_mae.base_q {\n    background-color: #55bb33; }\n  .jbrowse .aaScheme_mae.base_r {\n    background-color: #ffcc77; }\n  .jbrowse .aaScheme_mae.base_s {\n    background-color: #ff4455; }\n  .jbrowse .aaScheme_mae.base_t {\n    background-color: #ff4455; }\n  .jbrowse .aaScheme_mae.base_u {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_mae.base_v {\n    background-color: #66bbff; }\n  .jbrowse .aaScheme_mae.base_w {\n    background-color: #9999ff; }\n  .jbrowse .aaScheme_mae.base_x {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_mae.base_y {\n    background-color: #9999ff; }\n  .jbrowse .aaScheme_mae.base_z {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_purine.base_a {\n    background-color: #FF83FA; }\n  .jbrowse .aaScheme_purine.base_c {\n    background-color: #40E0D0; }\n  .jbrowse .aaScheme_purine.base_g {\n    background-color: #FF83FA; }\n  .jbrowse .aaScheme_purine.base_r {\n    background-color: #FF83FA; }\n  .jbrowse .aaScheme_purine.base_t {\n    background-color: #40E0D0; }\n  .jbrowse .aaScheme_purine.base_u {\n    background-color: #40E0D0; }\n  .jbrowse .aaScheme_purine.base_y {\n    background-color: #40E0D0; }\n  .jbrowse .aaScheme_strand.base_a {\n    background-color: #5858a7; }\n  .jbrowse .aaScheme_strand.base_b {\n    background-color: #4343bc; }\n  .jbrowse .aaScheme_strand.base_c {\n    background-color: #9d9d62; }\n  .jbrowse .aaScheme_strand.base_d {\n    background-color: #2121de; }\n  .jbrowse .aaScheme_strand.base_e {\n    background-color: #0000ff; }\n  .jbrowse .aaScheme_strand.base_f {\n    background-color: #c2c23d; }\n  .jbrowse .aaScheme_strand.base_g {\n    background-color: #4949b6; }\n  .jbrowse .aaScheme_strand.base_h {\n    background-color: #60609f; }\n  .jbrowse .aaScheme_strand.base_i {\n    background-color: #ecec13; }\n  .jbrowse .aaScheme_strand.base_k {\n    background-color: #4747b8; }\n  .jbrowse .aaScheme_strand.base_l {\n    background-color: #b2b24d; }\n  .jbrowse .aaScheme_strand.base_m {\n    background-color: #82827d; }\n  .jbrowse .aaScheme_strand.base_n {\n    background-color: #64649b; }\n  .jbrowse .aaScheme_strand.base_p {\n    background-color: #2323dc; }\n  .jbrowse .aaScheme_strand.base_q {\n    background-color: #8c8c73; }\n  .jbrowse .aaScheme_strand.base_r {\n    background-color: #6b6b94; }\n  .jbrowse .aaScheme_strand.base_s {\n    background-color: #4949b6; }\n  .jbrowse .aaScheme_strand.base_t {\n    background-color: #9d9d62; }\n  .jbrowse .aaScheme_strand.base_v {\n    background-color: #ffff00; }\n  .jbrowse .aaScheme_strand.base_w {\n    background-color: #c0c03f; }\n  .jbrowse .aaScheme_strand.base_x {\n    background-color: #797986; }\n  .jbrowse .aaScheme_strand.base_y {\n    background-color: #d3d32c; }\n  .jbrowse .aaScheme_strand.base_z {\n    background-color: #4747b8; }\n  .jbrowse .aaScheme_taylor.base_a {\n    background-color: #ccff00; }\n  .jbrowse .aaScheme_taylor.base_b {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_taylor.base_c {\n    background-color: #ffff00; }\n  .jbrowse .aaScheme_taylor.base_d {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_taylor.base_e {\n    background-color: #ff0066; }\n  .jbrowse .aaScheme_taylor.base_f {\n    background-color: #00ff66; }\n  .jbrowse .aaScheme_taylor.base_g {\n    background-color: #ff9900; }\n  .jbrowse .aaScheme_taylor.base_h {\n    background-color: #0066ff; }\n  .jbrowse .aaScheme_taylor.base_i {\n    background-color: #66ff00; }\n  .jbrowse .aaScheme_taylor.base_k {\n    background-color: #6600ff; }\n  .jbrowse .aaScheme_taylor.base_l {\n    background-color: #33ff00; }\n  .jbrowse .aaScheme_taylor.base_m {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_taylor.base_n {\n    background-color: #cc00ff; }\n  .jbrowse .aaScheme_taylor.base_p {\n    background-color: #ffcc00; }\n  .jbrowse .aaScheme_taylor.base_q {\n    background-color: #ff00cc; }\n  .jbrowse .aaScheme_taylor.base_r {\n    background-color: #0000ff; }\n  .jbrowse .aaScheme_taylor.base_s {\n    background-color: #ff3300; }\n  .jbrowse .aaScheme_taylor.base_t {\n    background-color: #ff6600; }\n  .jbrowse .aaScheme_taylor.base_v {\n    background-color: #99ff00; }\n  .jbrowse .aaScheme_taylor.base_w {\n    background-color: #00ccff; }\n  .jbrowse .aaScheme_taylor.base_x {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_taylor.base_y {\n    background-color: #00ffcc; }\n  .jbrowse .aaScheme_taylor.base_z {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_turn.base_a {\n    background-color: #2cd3d3; }\n  .jbrowse .aaScheme_turn.base_b {\n    background-color: #f30c0c; }\n  .jbrowse .aaScheme_turn.base_c {\n    background-color: #a85757; }\n  .jbrowse .aaScheme_turn.base_d {\n    background-color: #e81717; }\n  .jbrowse .aaScheme_turn.base_e {\n    background-color: #778888; }\n  .jbrowse .aaScheme_turn.base_f {\n    background-color: #1ee1e1; }\n  .jbrowse .aaScheme_turn.base_g {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_turn.base_h {\n    background-color: #708f8f; }\n  .jbrowse .aaScheme_turn.base_i {\n    background-color: #00ffff; }\n  .jbrowse .aaScheme_turn.base_k {\n    background-color: #7e8181; }\n  .jbrowse .aaScheme_turn.base_l {\n    background-color: #1ce3e3; }\n  .jbrowse .aaScheme_turn.base_m {\n    background-color: #1ee1e1; }\n  .jbrowse .aaScheme_turn.base_n {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_turn.base_p {\n    background-color: #f60909; }\n  .jbrowse .aaScheme_turn.base_q {\n    background-color: #3fc0c0; }\n  .jbrowse .aaScheme_turn.base_r {\n    background-color: #708f8f; }\n  .jbrowse .aaScheme_turn.base_s {\n    background-color: #e11e1e; }\n  .jbrowse .aaScheme_turn.base_t {\n    background-color: #738c8c; }\n  .jbrowse .aaScheme_turn.base_v {\n    background-color: #07f8f8; }\n  .jbrowse .aaScheme_turn.base_w {\n    background-color: #738c8c; }\n  .jbrowse .aaScheme_turn.base_x {\n    background-color: #7c8383; }\n  .jbrowse .aaScheme_turn.base_y {\n    background-color: #9d6262; }\n  .jbrowse .aaScheme_turn.base_z {\n    background-color: #5ba4a4; }\n  .jbrowse .aaScheme_zappo.base_a {\n    background-color: #ffafaf; }\n  .jbrowse .aaScheme_zappo.base_b {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_zappo.base_c {\n    background-color: #ffff00; }\n  .jbrowse .aaScheme_zappo.base_d {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_zappo.base_e {\n    background-color: #ff0000; }\n  .jbrowse .aaScheme_zappo.base_f {\n    background-color: #ffc800; }\n  .jbrowse .aaScheme_zappo.base_g {\n    background-color: #ff00ff; }\n  .jbrowse .aaScheme_zappo.base_h {\n    background-color: #6464ff; }\n  .jbrowse .aaScheme_zappo.base_i {\n    background-color: #ffafaf; }\n  .jbrowse .aaScheme_zappo.base_k {\n    background-color: #6464ff; }\n  .jbrowse .aaScheme_zappo.base_l {\n    background-color: #ffafaf; }\n  .jbrowse .aaScheme_zappo.base_m {\n    background-color: #ffafaf; }\n  .jbrowse .aaScheme_zappo.base_n {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_zappo.base_p {\n    background-color: #ff00ff; }\n  .jbrowse .aaScheme_zappo.base_q {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_zappo.base_r {\n    background-color: #6464ff; }\n  .jbrowse .aaScheme_zappo.base_s {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_zappo.base_t {\n    background-color: #00ff00; }\n  .jbrowse .aaScheme_zappo.base_v {\n    background-color: #ffafaf; }\n  .jbrowse .aaScheme_zappo.base_w {\n    background-color: #ffc800; }\n  .jbrowse .aaScheme_zappo.base_x {\n    background-color: #ffffff; }\n  .jbrowse .aaScheme_zappo.base_y {\n    background-color: #ffc800; }\n  .jbrowse .aaScheme_zappo.base_z {\n    background-color: #ffffff; }\n  .jbrowse div.menuBar {\n    padding: 1px 0;\n    height: 25px;\n    background: #396494;\n    text-align: right;\n    line-height: 1; }\n    .jbrowse div.menuBar a {\n      color: white; }\n    .jbrowse div.menuBar .dataset-name {\n      font-size: 13px;\n      color: white;\n      font-style: italic;\n      padding-right: 1em;\n      padding-top: 7px; }\n    .jbrowse div.menuBar * {\n      outline: none;\n      vertical-align: top; }\n    .jbrowse div.menuBar .dijitButtonNode {\n      background: transparent;\n      border: 2px outset rgba(120, 120, 120, 0.2);\n      height: 18px; }\n  .jbrowse div.topLink {\n    position: absolute;\n    right: 0;\n    top: 0;\n    z-index: 50;\n    background: white;\n    border: 1px solid #888;\n    border-width: 0 0 1px 1px; }\n  .jbrowse div.menuBar a, .jbrowse .topLink a {\n    padding: 0 0.8ex;\n    text-decoration: none; }\n  .jbrowse .menuBar .powered_by {\n    float: left;\n    font-size: 125%;\n    font-family: 'Helvetica Neue', Arial, Helvetica, 'Nimbus Sans L', sans-serif;\n    font-weight: bold;\n    line-height: 25px;\n    /* note this line-height should be the same as the fixed height of the menuBar */\n    cursor: pointer; }\n  .jbrowse .share {\n    line-height: 18px; }\n    .jbrowse .share .icon {\n      height: 8px;\n      width: 19px;\n      display: inline;\n      display: inline-block;\n      background: url("+n(i(1033))+") no-repeat -149px -91px;\n      margin-right: 2px;\n      margin-top: 2px;\n      vertical-align: middle; }\n  .jbrowse a.topLink, .jbrowse a.topLink * {\n    cursor: pointer; }\n  .jbrowse .topLink .powered_by {\n    padding: 0 0.5em;\n    color: black;\n    text-decoration: none; }\n  .jbrowse .menuBar .dijitButtonHover,\n  .jbrowse .menuBar .dijitDropDownButtonHover {\n    background: rgba(255, 255, 255, 0.07); }\n  .jbrowse .menuBar .dijitButtonActive .dijitButtonNode,\n  .jbrowse .menuBar .dijitDropDownButtonActive .dijitButtonNode {\n    border: 2px inset rgba(120, 120, 120, 0.2); }\n  .jbrowse .menuBar .dijitButtonNode {\n    padding: 0 1em; }\n  .jbrowse .menuBar .dijitButtonNode * {\n    color: white; }\n  .jbrowse .menuBar .config .icon {\n    height: 16px;\n    width: 16px;\n    margin-right: 2px;\n    margin-top: -2px;\n    display: inline;\n    display: inline-block;\n    background: url("+n(i(1033))+") no-repeat -168px -27px;\n    vertical-align: middle; }\n  .jbrowse .menuBar > .menu, .jbrowse .menuBar > .dijitComboBox {\n    float: left;\n    font-size: 120%;\n    color: white;\n    background: transparent;\n    height: 100%;\n    border: none; }\n  .jbrowse .menuBar > .dijitComboBox > .dijitInputContainer {\n    height: 100%; }\n  .jbrowse .menuBar > .dijitComboBox .dijitArrowButton {\n    padding: 0 3px 0 2px;\n    height: 100%; }\n    .jbrowse .menuBar > .dijitComboBox .dijitArrowButton .dijitArrowButtonInner {\n      background: url("+n(i(868))+") no-repeat scroll -56px center;\n      margin-top: 4px; }\n    .jbrowse .menuBar > .dijitComboBox .dijitArrowButton:hover {\n      background: rgba(255, 255, 255, 0.2); }\n  .jbrowse .menuBar > .dijitComboBox .dataset_select {\n    font-weight: bold;\n    background: transparent;\n    border: none;\n    color: inherit;\n    font-size: inherit;\n    font-style: italic;\n    height: 100%;\n    padding-bottom: 1px;\n    padding-left: 3px; }\n    .jbrowse .menuBar > .dijitComboBox .dataset_select .dijitSelectLabel {\n      padding: 0 0.5em;\n      vertical-align: middle; }\n    .jbrowse .menuBar > .dijitComboBox .dataset_select.dijitSelectHover td {\n      color: white; }\n    .jbrowse .menuBar > .dijitComboBox .dataset_select .dijitButtonContents {\n      background: transparent;\n      border-color: transparent; }\n  .jbrowse.globalMenu .dijitMenuItem td {\n    padding: 0.5em 2px 0.5em 5px; }\n  .jbrowse .menuBar > .menu .dijitButtonNode {\n    border: none; }\n  .jbrowse .menuBar > .menu.dijitDropDownButton,\n  .jbrowse .menuBar > .menu.dijitDropDownButton * {\n    margin: 0;\n    padding: 0;\n    line-height: 25px; }\n  .jbrowse .menuBar > .menu.dijitDropDownButton .dijitButtonNode {\n    padding: 0 1em 0 0.7em;\n    text-align: left; }\n  .jbrowse .menuBar > .menu .dijitDropDownButtonHover .dijitButtonNode {\n    background: rgba(255, 255, 255, 0.07); }\n  .jbrowse .menuBar > .menu .dijitDropDownButtonActive .dijitButtonNode {\n    border: none; }\n  .jbrowse .welcome_button {\n    border: 1px black;\n    background-color: #396494;\n    color: white;\n    padding: 10px;\n    margin: 2px;\n    width: 200px; }\n  .jbrowse .welcome_button:hover {\n    background-color: #3A8A9A; }\n  .jbrowse #location-info {\n    display: inline-block;\n    border: 0px solid #bbb;\n    padding: 3px 3px 3px 3px;\n    background-color: rgba(235, 235, 235, 0.6);\n    margin-right: 6px;\n    cursor: default;\n    position: relative;\n    top: 2px;\n    min-width: 40ex; }\n  .jbrowse #search-box {\n    margin-right: 10px; }\n  .jbrowse .separate-location-box {\n    float: right; }\n  .jbrowse div[id=widget_location] {\n    margin-left: 3px !important; }\n  .jbrowse #widget_location {\n    /*    width: 18ex !important;*/\n    padding-top: 2px; }\n  .jbrowse span1[widgetid=search-go-btn] {\n    position: relative;\n    left: -3px; }\n  .jbrowse div[widgetid=highlight-btn] {\n    position: relative;\n    top: 1px; }\n  .jbrowse .jbrowseIconHelp,\n  .jbrowse .jbrowseIconBusy,\n  .jbrowse .jbrowseIconLink,\n  .jbrowse .jbrowseIconCancel,\n  .jbrowse .jbrowseIconHorizontalResize,\n  .jbrowse .jbrowseIconVerticalResize {\n    background-image: url("+n(i(867))+");\n    width: 16px;\n    height: 16px; }\n  .jbrowse .dijitDisabled .jbrowseIconHelp,\n  .jbrowse .dijitDisabled .jbrowseIconBusy,\n  .jbrowse .dijitDisabled .jbrowseIconLink,\n  .jbrowse .dijitDisabled .jbrowseIconCancel,\n  .jbrowse .dijitDisabled .jbrowseIconHorizontalResize,\n  .jbrowse .dijitDisabled .jbrowseIconVerticalResize {\n    background-image: url("+n(i(1028))+");\n    width: 16px;\n    height: 16px; }\n  .jbrowse .jbrowseIconHelp {\n    background-position: 0; }\n  .jbrowse .jbrowseIconLink {\n    background-position: -152px; }\n  .jbrowse .jbrowseIconCancel {\n    background-position: -170px; }\n  .jbrowse .jbrowseIconBusy {\n    background-image: url("+n(i(1029))+"); }\n  .jbrowse .jbrowseIconHorizontalResize {\n    background-position: -209px; }\n  .jbrowse .jbrowseIconVerticalResize {\n    background-position: -230px; }\n  .jbrowse .dojoxTriStateCheckBox, .jbrowse .dojoxTriStateCheckBoxIcon {\n    background-image: url("+n(i(1034))+");\n    /* checkbox sprite image */\n    background-repeat: no-repeat;\n    width: 30px;\n    height: 22px !important;\n    margin: 0 2px 0 0;\n    padding: 5px 5px 5px 5px; }\n  .jbrowse .dj_ie6 .dojoxTriStateCheckBox, .jbrowse .dj_ie6 .dojoxTriStateCheckBoxIcon {\n    background-image: url("+n(i(1034))+");\n    /* checkbox sprite image */ }\n  .jbrowse .dojoxTriStateCheckBox {\n    /* unchecked */\n    background-position: -30px; }\n  .jbrowse .dojoxTriStateCheckBoxChecked {\n    /* checked */\n    background-position: 0px; }\n  .jbrowse .dojoxTriStateCheckBoxMixed {\n    /* mixed */\n    background-position: -90px; }\n  .jbrowse .dojoxTriStateCheckBoxDisabled {\n    /* disabled and unchecked */\n    background-position: -30px; }\n  .jbrowse .dojoxTriStateCheckBoxCheckedDisabled {\n    /* disabled and checked */\n    background-position: 0px; }\n  .jbrowse .dojoxTriStateCheckBoxMixedDisabled {\n    /* disabled and mixed */\n    background-position: -90px; }\n  .jbrowse .dojoxTriStateCheckBoxHover {\n    /* hovering over and unchecked */\n    background-position: -60px; }\n  .jbrowse .dojoxTriStateCheckBoxCheckedHover {\n    /* hovering over and checked */\n    background-position: 0px; }\n  .jbrowse .dojoxTriStateCheckBoxMixedHover {\n    /* hovering over and mixed */\n    background-position: -120px; }\n  .jbrowse .dijit_a11y .dojoxTriStateCheckBoxHover .dojoxTriStateCheckBoxInner,\n  .jbrowse .dijit_a11y .dojoxTriStateCheckBoxFocused .dojoxTriStateCheckBoxInner {\n    /* focused or hovering over */\n    border: dashed; }\n  .jbrowse .dijit_a11y .dojoxTriStateCheckBoxHover .dojoxTriStateCheckBoxInner,\n  .jbrowse .dijit_a11y .dojoxTriStateCheckBoxFocused .dojoxTriStateCheckBoxInner {\n    /* focused or hovering over */\n    border: solid; }\n  .jbrowse .dijit_a11y .dojoxTriStateCheckBoxDisabled .dojoxTriStateCheckBoxInner {\n    /* focused or hovering over */\n    opacity: 0.5; }\n  .jbrowse .dj_ie .dijit_a11y .dojoxTriStateCheckBoxDisabled .dojoxTriStateCheckBoxInner {\n    /* disabled */ }\n  .jbrowse .dojoxTriStateCheckBoxInner {\n    /* inner text */\n    visibility: hidden;\n    display: none;\n    position: absolute;\n    text-align: center; }\n  .jbrowse .dijit_a11y .dojoxTriStateCheckBoxInner {\n    /* inner text */\n    visibility: visible;\n    display: block; }\n  .jbrowse .dojoxTriStateCheckBoxInput {\n    /* place the actual input on top, but all-but-invisible */\n    opacity: 0.01;\n    padding: 0;\n    margin: 0;\n    border: 0;\n    width: 30px;\n    height: 22px;\n    background-position: center center;\n    background-repeat: no-repeat; }\n  .jbrowse .dj_ie .dojoxTriStateCheckBoxInput {\n    filter: alpha(opacity=0); }\n  .jbrowse .combination_track.empty, .jbrowse .combination_track.empty.pinned {\n    background: #aaa;\n    background: rgba(0, 0, 0, 0.1); }\n  .jbrowse .combinationDialog .formulaPreview {\n    text-align: center;\n    background-color: white;\n    border: 1px solid black;\n    padding: 20px 0;\n    line-height: 25px; }\n  .jbrowse .formulaPreview .leaf {\n    /* background: #A1F0A1; */\n    /* /\\* margin: 0 1px; *\\/ */\n    padding: 0 4px;\n    text-decoration: underline;\n    /* border: 1px solid #0DCA0D; */\n    /* white-space: nowrap; */ }\n  .jbrowse .formulaPreview .leaf.highlighted {\n    background-color: #BBB; }\n  .jbrowse .formulaPreview .op {\n    /* font-weight: bold; */\n    /* color: #FFF; */\n    /* background: #000; */\n    /* /\\* padding: 0 7px; *\\/ */\n    /* z-index: 10; */\n    /* font-size: 120%; */ }\n  .jbrowse .jbrowseHierarchicalTrackSelector {\n    background: #fafafa;\n    overflow: auto; }\n  .jbrowse .jbrowseHierarchicalTrackSelector > .header > h2.title {\n    padding: 7px 0 0.5em 6px;\n    margin: 0; }\n  .jbrowse .jbrowseHierarchicalTrackSelector .trackCount {\n    display: inline-block;\n    float: right; }\n  .jbrowse .jbrowseHierarchicalTrackSelector > .header > .textfilterContainer {\n    padding: 0 5px 5px 5px; }\n  .jbrowse .jbrowseHierarchicalTrackSelector > .header > .textfilterContainer > .textfilter {\n    margin: 0; }\n  .jbrowse .jbrowseHierarchicalTrackSelector .dijitTitlePaneTitle {\n    padding: 0 4px; }\n  .jbrowse .jbrowseHierarchicalTrackSelector .dijitTitlePaneTitleFocus:focus {\n    outline: none; }\n  .jbrowse .jbrowseHierarchicalTrackSelector label.tracklist-label {\n    display: block; }\n  .jbrowse .jbrowseHierarchicalTrackSelector > .uncategorized {\n    background: white;\n    padding: 10px;\n    border: 1px solid #bfbfbf; }\n  .jbrowse .jbrowseHierarchicalTrackSelector label.tracklist-label:hover {\n    background: #D2E1F1; }\n  .jbrowse .jbrowseHierarchicalTrackSelector label.tracklist-label.collapsed {\n    display: none; }\n  .jbrowse .jbrowseHierarchicalTrackSelector label.tracklist-label input.check {\n    position: relative;\n    top: 2px;\n    margin: 0 4px; }\n  .jbrowse .dj_safari .jbrowseHierarchicalTrackSelector label.tracklist-label input.check {\n    top: 0; }\n  .jbrowse #hierarchicalTrackPane_splitter {\n    background: #fafafa;\n    width: 5px;\n    border-right: 1px solid #555; }\n  .jbrowse .dojoxGrid table {\n    margin: 0; }\n  .jbrowse .dojoxGridRowSelectorStatusText {\n    display: none; }\n  .jbrowse#faceted_tracksel {\n    position: fixed;\n    top: 0;\n    left: 0;\n    height: 100%;\n    /* Track grid */\n    /* Track selector title bar */\n    /* Facet selection controls */\n    /* styling specifically for the title of the first facet title, which is 'My Tracks' */\n    /* style the 'empty' and similar messages that show up in the grid master pane */ }\n    .jbrowse#faceted_tracksel .active {\n      -moz-box-shadow: 4px 4px 10px 3px rgba(30, 30, 50, 0.3);\n      -webkit-box-shadow: 4px 4px 10px 3px rgba(30, 30, 50, 0.3);\n      box-shadow: 4px 4px 10px 3px rgba(30, 30, 50, 0.3); }\n    .jbrowse#faceted_tracksel button, .jbrowse#faceted_tracksel input {\n      font-size: 12px; }\n    .jbrowse#faceted_tracksel div.mainContainer {\n      height: 100%;\n      width: 100%; }\n    .jbrowse#faceted_tracksel div.mainContainer {\n      border-right: 2px solid #555;\n      background: #e9e9e9; }\n    .jbrowse#faceted_tracksel .dojoxGridCellFocus {\n      border-color: transparent;\n      border-color: transparent !important; }\n    .jbrowse#faceted_tracksel .gridPane .gridControls {\n      padding: 2px 3px;\n      font-size: 110%; }\n    .jbrowse#faceted_tracksel .gridPane .gridControls {\n      background: #e9e9e9;\n      border: 1px solid #aaa;\n      border-right: none; }\n    .jbrowse#faceted_tracksel .gridPane .gridControls > * {\n      margin: 2px 3px;\n      display: inline-block;\n      vertical-align: middle; }\n    .jbrowse#faceted_tracksel .gridPane .gridControls button {\n      height: 2.2em;\n      margin: 4px;\n      white-space: nowrap; }\n    .jbrowse#faceted_tracksel .gridPane .gridControls button > * {\n      display: inline-block;\n      vertical-align: middle; }\n    .jbrowse#faceted_tracksel .gridPane .gridControls button img {\n      padding: 0 0.4em 0 0; }\n    .jbrowse#faceted_tracksel .busy .gridControls .busy_indicator {\n      visibility: visible; }\n    .jbrowse#faceted_tracksel .gridControls .busy_indicator {\n      z-index: 20;\n      visibility: hidden; }\n    .jbrowse#faceted_tracksel label.textFilterControl img.text_filter_clear {\n      display: none; }\n    .jbrowse#faceted_tracksel label.textFilterControl.selected img.text_filter_clear {\n      display: block; }\n    .jbrowse#faceted_tracksel label.textFilterControl input {\n      border-top: 3px solid transparent;\n      font-weight: bold;\n      padding: 0.2em; }\n    .jbrowse#faceted_tracksel label.textFilterControl.selected input {\n      border-top: 3px solid #396494;\n      background: #D2E1F1; }\n    .jbrowse#faceted_tracksel #faceted_tracksel_top {\n      border-bottom: 1px solid #ccc;\n      padding: 5px; }\n    .jbrowse#faceted_tracksel #faceted_tracksel_top {\n      background: #396494; }\n    .jbrowse#faceted_tracksel #faceted_tracksel_top .topLink {\n      color: white; }\n    .jbrowse#faceted_tracksel #faceted_tracksel_top > * {\n      display: inline-block;\n      vertical-align: middle;\n      margin-left: 5px; }\n    .jbrowse#faceted_tracksel #faceted_tracksel_top .title {\n      padding: 0;\n      width: 185px;\n      font-weight: bold;\n      color: white;\n      font-size: 180%; }\n    .jbrowse#faceted_tracksel .faceted_tracksel_on_off.tab {\n      position: absolute;\n      top: 5em;\n      left: 100%;\n      z-index: 5;\n      padding: 5px 0px;\n      white-space: nowrap;\n      cursor: pointer;\n      -moz-box-shadow: 4px 4px 10px 2px rgba(80, 80, 80, 0.3);\n      -webkit-box-shadow: 4px 4px 10px 2px rgba(80, 80, 80, 0.3);\n      box-shadow: 4px 4px 10px 2px rgba(80, 80, 80, 0.3); }\n    .jbrowse#faceted_tracksel div.faceted_tracksel_on_off.tab > * {\n      display: inline-block;\n      vertical-align: middle;\n      padding: 0 6px; }\n    .jbrowse#faceted_tracksel .faceted_tracksel_on_off.tab {\n      background: #e9e9e9 url("+n(i(640))+") top repeat-x;\n      border: 2px solid #666;\n      border-top-right-radius: 5px;\n      border-bottom-right-radius: 5px; }\n    .jbrowse#faceted_tracksel #faceted_tracksel_top div.topLink {\n      position: absolute;\n      top: 0;\n      right: 0;\n      background: none;\n      border: none;\n      color: white;\n      padding: 3px 0.6em;\n      font-weight: bold; }\n    .jbrowse#faceted_tracksel .facetSelect {\n      width: 100%;\n      border-spacing: 0; }\n    .jbrowse#faceted_tracksel .facetSelect .facetValue {\n      padding: 0.1em 0.4em;\n      cursor: pointer; }\n    .jbrowse#faceted_tracksel .facetSelect .facetValue > * {\n      vertical-align: top; }\n    .jbrowse#faceted_tracksel .facetSelect .disabled {\n      color: gray; }\n    .jbrowse#faceted_tracksel .facetSelect .facetValue.disabled {\n      display: none; }\n    .jbrowse#faceted_tracksel .facetSelect .facetValue.disabled.selected {\n      display: table-row; }\n    .jbrowse#faceted_tracksel .facetSelect .facetValue:hover {\n      background: #D2E1F1; }\n    .jbrowse#faceted_tracksel .facetSelect .facetValue .count {\n      padding: 0 0.7em 0 0.4em;\n      color: #333;\n      text-align: right; }\n    .jbrowse#faceted_tracksel .facetSelect .facetValue .value {\n      width: 80%; }\n    .jbrowse#faceted_tracksel .facetSelect .selected {\n      background: #b1d3f6; }\n    .jbrowse#faceted_tracksel .facetSelect .facetValue.selected,\n    .jbrowse#faceted_tracksel .facetSelect .facetValue.selected:hover {\n      background: #AEC7E3; }\n    .jbrowse#faceted_tracksel .dijitContentPane {\n      padding: 0; }\n    .jbrowse#faceted_tracksel .dijitTitlePane .dijitTitlePaneTitle {\n      padding: 0; }\n    .jbrowse#faceted_tracksel .dijitTitlePaneTitleFocus {\n      position: relative; }\n    .jbrowse#faceted_tracksel .dijitTitlePaneTitleFocus {\n      border-top: 3px solid transparent;\n      padding: 2px 2px 2px 0.6em;\n      color: #1B3047; }\n    .jbrowse#faceted_tracksel .dijitOpen .facetTitle {\n      font-weight: bold;\n      color: black; }\n    .jbrowse#faceted_tracksel .activeFacet .facetTitle {\n      font-weight: bold;\n      color: black; }\n    .jbrowse#faceted_tracksel .activeFacet {\n      border-top: 3px solid #396494;\n      background-color: #AEC7E3; }\n    .jbrowse#faceted_tracksel .facetTitle a {\n      position: absolute;\n      top: 2px;\n      right: -4px;\n      visibility: hidden; }\n    .jbrowse#faceted_tracksel .activeFacet a.clearFacet {\n      visibility: visible;\n      padding: 1px 6px; }\n    .jbrowse#faceted_tracksel .dijitTitlePaneContentInner {\n      padding: 0px; }\n    .jbrowse#faceted_tracksel .myTracks .facetTitle:after {\n      content: url("+n(i(1439))+");\n      margin-left: 7px; }\n    .jbrowse#faceted_tracksel .myTracks .facetTitle {\n      color: black;\n      font-weight: bold;\n      padding-bottom: 6px; }\n    .jbrowse#faceted_tracksel .dojoxGridMasterMessages {\n      font-size: 16px; }\n  .jbrowse .snap-exon,\n  .jbrowse .plus-snap-exon,\n  .jbrowse .minus-snap-exon,\n  .jbrowse .snap-five_prime_UTR,\n  .jbrowse .plus-snap-five_prime_UTR,\n  .jbrowse .minus-snap-five_prime_UTR,\n  .jbrowse .snap-three_prime_UTR,\n  .jbrowse .plus-snap-three_prime_UTR,\n  .jbrowse .minus-snap-three_prime_UTR {\n    position: absolute;\n    height: 7px;\n    background-color: #99FFCC;\n    border-style: solid;\n    border-color: #D88;\n    border-width: 2px 0px 2px 0px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .augustus-exon,\n  .jbrowse .plus-augustus-exon,\n  .jbrowse .minus-augustus-exon,\n  .jbrowse .augustus-five_prime_UTR,\n  .jbrowse .plus-augustus-five_prime_UTR,\n  .jbrowse .minus-augustus-five_prime_UTR,\n  .jbrowse .augustus-three_prime_UTR,\n  .jbrowse .plus-augustus-three_prime_UTR,\n  .jbrowse .minus-augustus-three_prime_UTR {\n    position: absolute;\n    height: 7px;\n    background-color: #FFCCFF;\n    border-style: solid;\n    border-color: #D88;\n    border-width: 2px 0px 2px 0px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .genemark-exon,\n  .jbrowse .plus-genemark-exon,\n  .jbrowse .minus-genemark-exon,\n  .jbrowse .genemark-five_prime_UTR,\n  .jbrowse .plus-genemark-five_prime_UTR,\n  .jbrowse .minus-genemark-five_prime_UTR,\n  .jbrowse .genemark-three_prime_UTR,\n  .jbrowse .plus-genemark-three_prime_UTR,\n  .jbrowse .minus-genemark-three_prime_UTR {\n    position: absolute;\n    height: 7px;\n    background-color: #679B68;\n    border-style: solid;\n    border-color: #D88;\n    border-width: 2px 0px 2px 0px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .fgenesh-exon,\n  .jbrowse .plus-fgenesh-exon,\n  .jbrowse .minus-fgenesh-exon,\n  .jbrowse .fgenesh-five_prime_UTR,\n  .jbrowse .plus-fgenesh-five_prime_UTR,\n  .jbrowse .minus-fgenesh-five_prime_UTR,\n  .jbrowse .fgenesh-three_prime_UTR,\n  .jbrowse .plus-fgenesh-three_prime_UTR,\n  .jbrowse .minus-fgenesh-three_prime_UTR {\n    position: absolute;\n    height: 7px;\n    background-color: #FF99FF;\n    border-style: solid;\n    border-color: #D88;\n    border-width: 2px 0px 2px 0px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .protein2genome_part,\n  .jbrowse .plus-protein2genome_part,\n  .jbrowse .minus-protein2genome_part {\n    position: absolute;\n    height: 4px;\n    margin-top: -2px;\n    background-color: #FFFF00;\n    border-style: solid;\n    border-color: #6E6E6E;\n    border-width: 1px 1px 1px 1px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .blastn_part,\n  .jbrowse .plus-blastn_part,\n  .jbrowse .minus-blastn_part {\n    position: absolute;\n    height: 4px;\n    margin-top: -2px;\n    background-color: #66CC00;\n    border-style: solid;\n    border-color: #6E6E6E;\n    border-width: 1px 1px 1px 1px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .blastx_part,\n  .jbrowse .plus-blastx_part,\n  .jbrowse .minus-blastx_part {\n    position: absolute;\n    height: 4px;\n    margin-top: -2px;\n    background-color: #FF00FF;\n    border-style: solid;\n    border-color: #6E6E6E;\n    border-width: 1px 1px 1px 1px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .tblastx_part,\n  .jbrowse .plus-tblastx_part,\n  .jbrowse .minus-tblastx_part {\n    position: absolute;\n    height: 4px;\n    margin-top: -2px;\n    background-color: #663366;\n    border-style: solid;\n    border-color: #6E6E6E;\n    border-width: 1px 1px 1px 1px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .est2genome_part,\n  .jbrowse .plus-est2genome_part,\n  .jbrowse .minus-est2genome_part {\n    position: absolute;\n    height: 4px;\n    margin-top: -2px;\n    background-color: #FAFAD2;\n    border-style: solid;\n    border-color: #6E6E6E;\n    border-width: 1px 1px 1px 1px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .repeat_part,\n  .jbrowse .plus-repeat_part,\n  .jbrowse .minus-repeat_part {\n    position: absolute;\n    height: 4px;\n    margin-top: -2px;\n    background-color: #FF0000;\n    border-style: solid;\n    border-color: #6E6E6E;\n    border-width: 1px 1px 1px 1px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; }\n  .jbrowse .cdna2genome_part,\n  .jbrowse .plus-cdna2genome_part,\n  .jbrowse .minus-cdna2genome_part {\n    position: absolute;\n    height: 4px;\n    margin-top: -2px;\n    background-color: #8C468C;\n    border-style: solid;\n    border-color: #6E6E6E;\n    border-width: 1px 1px 1px 1px;\n    z-index: 8;\n    min-width: 1px;\n    cursor: pointer; 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Promise(function(e,t){l._showBlock(c,h,h+n,r,o,a,e)}));for(c=d+1;c<=t;c++)h=i+n*(c-e),f.push(new Promise(function(e,t){l._showBlock(c,h,h+n,r,o,a,e)}));s&&Promise.all(f).then(s,s);var g=this.blocks[e];for(c=u;c<e;c++)this.transfer(this.blocks[c],g,r,o,a),this.cleanupBlock(this.blocks[c]),this._hideBlock(c);for(g=this.blocks[t],c=d;c>t;c--)this.transfer(this.blocks[c],g,r,o,a),this.cleanupBlock(this.blocks[c]),this._hideBlock(c);this.firstAttached=e,this.lastAttached=t,this._adjustBlanks(),this.inShowRange=!1,this.heightUpdate(this.height),this.updateStaticElements(this.genomeView.getPosition())}},cleanupBlock:function(e){e&&e.destroy()},destroy:function(){i.forEach(this.blocks||[],function(e){this.cleanupBlock(e)},this),delete this.blocks,delete this.div,this.inherited(arguments)},_hideBlock:function(e){this.blocks[e]&&(this.div.removeChild(this.blocks[e].domNode),this.cleanupBlock(this.blocks[e]),this.blocks[e]=void 0,this.blockHeights[e]=0)},_adjustBlanks:function(){null===this.firstAttached||null===this.lastAttached?(this.leftBlank.style.left="0px",this.leftBlank.style.width="50%",this.rightBlank.style.left="50%",this.rightBlank.style.width="50%"):(this.leftBlank.style.width=this.firstAttached*this.widthPct+"%",this.rightBlank.style.left=(this.lastAttached+1)*this.widthPct+"%",this.rightBlank.style.width=(this.numBlocks-this.lastAttached-1)*this.widthPct+"%")},hideAll:function(){if(null!=this.firstAttached){for(var e=this.firstAttached;e<=this.lastAttached;e++)this._hideBlock(e);this.firstAttached=null,this.lastAttached=null,this._adjustBlanks()}},hideRegion:function(e){if(null!=this.firstAttached){for(var t=this.firstAttached;t<=this.lastAttached;t++)this.blocks[t]&&e.ref==this.refSeq.name&&!(this.blocks[t].leftBase>e.end||this.blocks[t].rightBase<e.start)&&this._hideBlock(t);this._adjustBlanks()}},changed:function(){this.hideAll(),this._changedCallback&&this._changedCallback()},_makeLoadingMessage:function(){var e=dojo.create("div",{className:"loading",innerHTML:'<div class="text">Loading</span>',title:"Loading data...",style:{visibility:"hidden"}});return window.setTimeout(function(){e.style.visibility="visible"},200),e},showFatalError:function(e){h(".block",this.div).concat(h(".blank-block",this.div)).concat(h(".error",this.div)).orphan(),this.blocks=[],this.blockHeights=[],this.fatalErrorMessageElement=this._renderErrorMessage(e||this.fatalError,this.div),this.heightUpdate(s.position(this.fatalErrorMessageElement).h),this.updateStaticElements(this.genomeView.getPosition())},_handleError:function(e,t){var n=dojo.mixin({},e);dojo.mixin(n,t);var r="object"==(void 0===e?"undefined":o(e));r&&e instanceof j.TimeOut&&n.block?this.fillBlockTimeout(n.blockIndex,n.block,e):r&&e instanceof j.DataOverflow?n.block?this.fillTooManyFeaturesMessage(n.blockIndex,n.block,t.scale,e):i.forEach(this.blocks,function(i,n){i&&this.fillTooManyFeaturesMessage(n,i,t.scale,e)},this):(console.error(e.stack||""+e,e),this.fatalError=e,this.showFatalError(e))},fillBlockError:function(e,t,i){i=i||this.fatalError||this.error,a.empty(t.domNode);var n=this._renderErrorMessage(i,t.domNode);this.heightUpdate(dojo.position(n).h,e)},_renderErrorMessage:function(e,t){return a.create("div",{className:"error",innerHTML:'<h2>Error</h2><div class="text">An error was encountered when displaying this track.</div>'+(e?'<div class="codecaption">Diagnostic message</div><code>'+e+"</code>":""),title:"An error occurred"},t)},fillTooManyFeaturesMessage:function(e,t,i,n){var r=(n&&n.message||"Too much data to show").replace(/\.$/,"");this.fillMessage(e,t,r+(i>=this.browser.view.maxPxPerBp?"":"; zoom in to see detail")+".")},redraw:function(){this.clear(),this.genomeView.showVisibleBlocks(!0)},markBlockHeightOverflow:function(e){e.heightOverflowed||(e.heightOverflowed=!0,l.add(e.domNode,"height_overflow"),a.create("div",{className:"height_overflow_message",innerHTML:"Max height reached",style:{top:this.height-16+"px",height:"16px"}},e.domNode))},_showBlock:function(e,t,i,n,r,o,a){if(this.empty||this.fatalError)return this.heightUpdate(this.labelHeight),void(a&&a());if(this.blocks[e])return this.heightUpdate(this.blockHeights[e],e),void(a&&a());var s=new B({startBase:t,endBase:i,scale:n,node:{className:"block",style:{left:e*this.widthPct+"%",width:this.widthPct+"%"}}});if(this.blocks[e]=s,this.div.appendChild(s.domNode),this.blocks[e-1],this.blocks[e+1],this.widthPx,this.fatalError)return this.fillBlockError(e,s),void(a&&a());var l=this._makeLoadingMessage();s.domNode.appendChild(l);var c=function(){s&&l.parentNode&&s.domNode.removeChild(l),a&&a()},h={blockIndex:e,block:s,leftBlock:this.blocks[e-1],rightBlock:this.blocks[e+1],leftBase:t,rightBase:i,scale:n,stripeWidth:this.widthPx,containerStart:r,containerEnd:o,finishCallback:c};try{this.fillBlock(h)}catch(e){this._handleError(e,h),c()}},moveBlocks:function(e){var t,i,n=new Array(this.numBlocks),r=new Array(this.numBlocks);for(t=0;t<this.numBlocks;t++)r[t]=0;for(this.lastAttached+e<0||this.firstAttached+e>=this.numBlocks?(this.firstAttached=null,this.lastAttached=null):(this.firstAttached=Math.max(0,Math.min(this.numBlocks-1,this.firstAttached+e)),this.lastAttached=Math.max(0,Math.min(this.numBlocks-1,this.lastAttached+e)),i=e<0?this.blocks[this.firstAttached-e]:this.blocks[this.lastAttached-e]),t=0;t<this.blocks.length;t++){var o=t+e;o<0||o>=this.numBlocks?(i&&this.blocks[t]&&this.transfer(this.blocks[t],i),this._hideBlock(t)):(n[o]=this.blocks[t],n[o]&&(n[o].domNode.style.left=o*this.widthPct+"%"),r[o]=this.blockHeights[t])}this.blocks=n,this.blockHeights=r,this._adjustBlanks()},sizeInit:function(e,t,i){var n,r;if(this.numBlocks=e,this.widthPct=t,i&&this.moveBlocks(-i),this.blocks&&this.blocks.length>0){var o=this.blocks[e-1];for(n=e;n<this.blocks.length;n++)o&&this.blocks[n]&&this.transfer(this.blocks[n],o),this._hideBlock(n);for(r=this.blocks.length,this.blocks.length=e,this.blockHeights.length=e,n=r;n<e;n++)this.blocks[n]=void 0,this.blockHeights[n]=0;if(this.lastAttached=Math.min(this.lastAttached,e-1),this.firstAttached>this.lastAttached&&(this.firstAttached=null,this.lastAttached=null),this.blocks.length!=e)throw new Error("block number mismatch: should be "+e+"; blocks.length: "+this.blocks.length);for(n=0;n<e;n++)this.blocks[n]&&(this.blocks[n].domNode.style.left=n*t+"%",this.blocks[n].domNode.style.width=t+"%")}else this.initBlocks();this.makeTrackMenu()},fillMessage:function(e,t,i,n){a.empty(t.domNode);var r=dojo.create("div",{className:n||"message",innerHTML:i},t.domNode);this.heightUpdate(s.getMarginBox(r,c.getComputedStyle(r)).h,e)},updateStaticElements:function(e){this.window_info=dojo.mixin(this.window_info||{},e),this.fatalErrorMessageElement&&(this.fatalErrorMessageElement.style.width=.6*this.window_info.width+"px","x"in e&&(this.fatalErrorMessageElement.style.left=e.x+.2*this.window_info.width+"px")),this.label&&"x"in e&&(this.label.style.left=e.x+"px")},_renderContextMenu:function(e,t,i){for(var n in i||(i=new b,this.own(i)),e){var r=e[n];try{if(r.children){var o=new b;i.addChild(o),i.addChild(new m({popup:o,label:r.label})),this._renderContextMenu(r.children,t,o)}else{var a=dojo.clone(r);(a.action||a.url||a.href)&&(a.onClick=this._makeClickHandler(r,t)),a.label&&!a.onClick&&(a.disabled=!0);var s={"dijit/MenuItem":v,"dijit/CheckedMenuItem":w,"dijit/RadioMenuItem":k,"dijit/MenuSeparator":y}[r.type]||v;i.addChild(new s(a))}}catch(e){console.error("failed to render menu item "+n,e)}}return i},_makeClickHandler:function(e,t){var i=this;if("function"==typeof e)e={action:e};else{if(void 0===e)return console.error("Undefined click specification, cannot make click handler"),function(){};"defaultDialog"==e.action&&(e.action="contentDialog",e.content=dojo.hitch(this,"defaultFeatureDetail"))}var n=function(n){if(!i.genomeView.dragging){var r=t||this,o=i._processMenuSpec(dojo.clone(e),r),a=o.url||o.href;if(o.url=a,dojo.clone(o.style||{}),o.action=o.action||(a?"iframeDialog":!!o.content&&"contentDialog"),o.title=o.title||o.label,"string"==typeof o.action)o.action={iframedialog:"iframeDialog",iframe:"iframeDialog",contentdialog:"contentDialog",content:"contentDialog",baredialog:"bareDialog",bare:"bareDialog",xhrdialog:"xhrDialog",xhr:"xhrDialog",newwindow:"newWindow",_blank:"newWindow",thiswindow:"navigateTo",navigateto:"navigateTo"}[(""+o.action).toLowerCase()],"newWindow"==o.action?window.open(a,"_blank"):"navigateTo"==o.action?window.location=a:o.action in{iframeDialog:1,contentDialog:1,xhrDialog:1,bareDialog:1}&&i._openDialog(o,n,r);else{if("function"!=typeof o.action)return;o.action.call(r,n)}}};return e.label&&(n.label=e.label),n},_trackDetailsContent:function(e){var i=a.create("div",{className:"detail"}),n=t.hitch(this,"renderDetailField",i);n("Name",this.key||this.name);var r=t.clone(this.getMetadata());if(delete r.key,delete r.label,"object"==o(r.conf)&&delete r.conf,this.browser&&this.browser.config&&this.browser.config.trackSelector&&this.browser.config.trackSelector.renameFacets){var s={};for(var l in r)s[this.browser.config.trackSelector.renameFacets[l]||l]=r[l];r=s}var c=[];for(var l in r)c.push(l);c.sort(function(e,t){return e.toLowerCase().localeCompare(t.toLowerCase())});for(var h=0;h<c.length;h++)l=c[h],n(this.camelToTitleCase(l),r[l]);for(var l in e)n(l,e[l]);return i},camelToTitleCase:function(e){return e===e.toLowerCase()?_.ucFirst(e.replace(/_/g," ")):e},getMetadata:function(){return this.config.metadata||this.browser&&this.browser.trackMetaDataStore&&this.browser.trackMetaDataStore.getItem(this.name)||{}},setPinned:function(e){return this.config.pinned=!!e,this.config.pinned?l.add(this.div,"pinned"):l.remove(this.div,"pinned"),this.config.pinned},isPinned:function(){return!!this.config.pinned},_trackMenuOptions:function(){var e=this;return[{label:"About this track",title:"About track: "+(this.key||this.name),iconClass:"jbrowseIconHelp",action:"contentDialog",content:dojo.hitch(this,"_trackDetailsContent")},{label:"Pin to top",type:"dijit/CheckedMenuItem",title:"make this track always visible at the top of the view",checked:e.isPinned(),onClick:function(){e.browser.publish("/jbrowse/v1/v/tracks/"+(this.checked?"pin":"unpin"),[e.name])}},{label:"Edit config",title:"edit this track's configuration",iconClass:"dijitIconConfigure",action:function(){new A(e.config).show(function(t){e.browser.publish("/jbrowse/v1/v/tracks/replace",[t.conf])})}},{label:"Delete track",title:"delete this track",iconClass:"dijitIconDelete",action:function(){new T({title:"Delete track?",message:"Really delete this track?"}).show(function(t){t&&e.browser.publish("/jbrowse/v1/v/tracks/delete",[e.config])})}}]},_processMenuSpec:function(e,t){for(var i in e)e.hasOwnProperty(i)&&("object"==o(e[i])?e[i]=this._processMenuSpec(e[i],t):e[i]=this.template(t.feature,this._evalConf(t,e[i],i)));return e},_evalConf:function(e,t,i){return"function"!=typeof t||{action:1,click:1,content:1}[i]?t:t.apply(e,e.callbackArgs||[])},getConfForFeature:function(e,t){return this.getConf(e,[t,e,null,null,this])},isFeatureHighlighted:function(e,t){var i=this.browser.getHighlight();return i&&i.objectName&&i.objectName==t&&i.ref==this.refSeq.name&&!(e.get("start")>i.end||e.get("end")<i.start)},_openDialog:function(t,i,n){n=n||{};var o=t.action;o=o.replace(/Dialog/,"");var a,l=n.feature&&(n.feature.get("name")||n.feature.get("id")),c={class:"popup-dialog popup-dialog-"+o,title:t.title||t.label||(l?l+" details":"Details"),style:dojo.clone(t.style||{})};function h(e,t){"function"==typeof t.then?t.then(function(t){e.set("content",t)}):e.set("content",t)}if(t.dialog&&e.safeMixin(c,t.dialog),"xhr"==o||"content"==o)"xhr"==o&&(c.href=t.url),a=new g(c),n.dialog=a,"content"==o&&h(a,this._evalConf(n,t.content,null)),_.removeAttribute(n,"dialog");else if("bare"==o)a=new p(c),n.dialog=a,h(a,this._evalConf(n,t.content,null)),_.removeAttribute(n,"dialog");else if("iframe"==o){var u=function(){var e=s.position(this.browser.container);return{h:Math.round(.8*e.h),w:Math.round(.8*e.w)}}.call(this);a=new p(c);var d=dojo.create("iframe",{tabindex:"0",width:u.w,height:u.h,style:{border:"none"},src:t.url});a.set("content",d),t.hideIframeDialogUrl||dojo.create("a",{href:t.url,target:"_blank",className:"dialog-new-window",title:"open in new window",onclick:dojo.hitch(a,"hide"),innerHTML:t.url},a.titleBar);var f=function(){var e=s.position(a.containerNode),t=e.w,i=e.h-s.position(a.titleBar).h;d.width=t,d.height=i};r.after(a,"layout",f),r.after(a,"show",f)}r.after(a,"hide",function(){setTimeout(function(){a.destroyRecursive()},500)}),a.show()},template:function(e,t){return"string"==typeof t&&e?t?t.replace(/\{([^}]+)\}/g,function(t,i){var n=e?e.get(i.toLowerCase()):void 0;return void 0!==n?n:""}):void 0:t},makeTrackMenu:function(){var e=this;d(this._trackMenuOptions()).then(function(t){if(t&&t.length&&e.label&&e.labelMenuButton){e.trackMenu&&e.trackMenu.destroyRecursive();var i=e._renderContextMenu(t,{menuButton:e.labelMenuButton,track:e,browser:e.browser,refSeq:e.refSeq});i.startup(),i.set("leftClickToOpen",!0),i.bindDomNode(e.labelMenuButton),i.set("leftClickToOpen",!1),i.bindDomNode(e.label),e.trackMenu=i,e.own(e.trackMenu)}})},fillBlockTimeout:function(e,t){a.empty(t.domNode),l.add(t.domNode,"timed_out"),this.fillMessage(e,t,"This region took too long to display, possibly because it contains too much data. Try zooming in to show a smaller region.")},renderRegionBookmark:function(e,t,n){var r=this;t.then?t.then(function(t){i.forEach(t.features,function(t){if(t.ref==this.refSeq.name){var i=new C(t.refseq+":"+t.start+".."+t.end);this.renderRegionHighlight(e,i,t.color,n?t.label:null,n?t.rlabel:null)}},r)},function(e){console.log("Couldn't get bookmarks")}):i.forEach(t.features,function(t){if(t.ref==this.refSeq.name){var i=new C(t.refseq+":"+t.start+".."+t.end);this.renderRegionHighlight(e,i,t.color,n?t.label:null,n?t.rlabel:null)}},this)},renderRegionHighlight:function(e,t,i,n,r){if(!(t.start>e.rightBase||t.end<e.leftBase)){var o=e.rightBase-e.leftBase,s=t.start,l=t.end,c=e.leftBase-s;c>0&&(s+=c);var h=l-e.rightBase;h>0&&(l-=h);var u=100*(l-s)/o;if(s=100*(s-e.leftBase)/o,t=a.create("div",{className:(i?"global_highlight_mod":"global_highlight")+(c<=0?" left":"")+(h<=0?" right":""),style:{left:s+"%",width:u+"%",height:"100%",background:i}},e.block.domNode),this.postRenderHighlight(t),n){if(c<=0)var d=a.create("div",{className:"horizontaltext",style:{background:"white",zIndex:1e3,left:s+"%"},innerHTML:n},e.block.domNode);h<=0&&a.create("div",{className:"horizontaltext",style:{background:"white",zIndex:1e3,left:s+u+"%"},innerHTML:r},e.block.domNode);var f=d.clientWidth+1+"px";d.style.left="calc("+s+"% - "+f+")"}}},postRenderHighlight:function(e){}})}.apply(null,n))||(e.exports=r)},349:function(e,t,i){var n,r;n=[i(575),i(577),i(587),i(342)],void 0===(r=function(e,t,i,n){return e(null,{_estimateGlobalStats:function(e){var r=new i;e=e||this.refSeq;var o=this.storeTimeout||3e3;if(0!=this.storeTimeout){var a=new Date,s=function(i,n){var r=this,o=.75*e.start+.25*e.end,a=Math.max(0,Math.round(o-i/2)),s=Math.min(Math.round(o+i/2),e.end),l=[];this._getFeatures({ref:e.name,start:a,end:s},function(e){l.push(e)},function(o){l=t.filter(l,function(e){return e.get("start")>=a&&e.get("end")<=s});var c=(r.getConf("topLevelFeaturesPercent")||100)/100;n.call(r,i,{featureDensity:l.length/i*c,_correctionFactor:c,_statsSampleFeatures:l.length,_statsSampleInterval:{ref:e.name,start:a,end:s,length:i}})},function(e){n.call(r,i,null,e)})};return s.call(this,100,function t(i,l,c){if(c)c.isInstanceOf&&c.isInstanceOf(n.DataOverflow)?(console.log("Store statistics found chunkSizeLimit error, using empty: "+(this.source||this.name)),r.resolve({featureDensity:0,error:"global stats estimation found chunkSizeError"})):r.reject(c);else{var h=e.end-e.start;l._statsSampleFeatures>=300||2*i>h||c?(console.log("Store statistics: "+(this.source||this.name),l),r.resolve(l)):new Date-a<o?s.call(this,2*i,t):(console.log("Store statistics timed out: "+(this.source||this.name)),r.resolve({featureDensity:0,error:"global stats estimation timed out"}))}}),r}r.resolve({featureDensity:0,error:"global stats estimation timed out"})}})}.apply(null,n))||(e.exports=r)},350:function(e,t,i){var n,r,o="function"==typeof Symbol&&"symbol"==typeof Symbol.iterator?function(e){return typeof e}:function(e){return e&&"function"==typeof Symbol&&e.constructor===Symbol&&e!==Symbol.prototype?"symbol":typeof e};n=[i(575),i(576),i(334)],void 0===(r=function(e,t,i){return e(null,{constructor:function(e){if(e=e||{},this._finalizeConfig(e.config),this.browser=e.browser,!this.browser)throw"a reference to the main browser is required by this constructor";this.compiledConfig={}},_finalizeConfig:function(e){this.config=this._mergeConfigs(dojo.clone(this._defaultConfig()),e||{})},_defaultConfig:function(){return{baseUrl:"/"}},resolveUrl:function(e,t){return t=t||{},i.resolveUrl(this.getConf("baseUrl",[]),this.fillTemplate(e,t))},_mergeConfigs:function(e,t){if(null===t)return null;for(var i in null===e&&(e={}),t)i in e&&"object"==o(t[i])&&"object"==o(e[i])?e[i]=this._mergeConfigs(e[i],t[i]):void 0!==e[i]&&void 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density",min:0,height:100,color:"goldenrod",clip_marker_color:"red"},style:{_defaultHistScale:4,_defaultLabelScale:30,_defaultDescriptionScale:120,showLabels:!0,showTooltips:!0,label:"name,id",description:"note, description"},displayMode:"normal",events:{contextmenu:function(e,t,i,r,o){o=n.fix(o),t&&t.contextMenu&&t.contextMenu._openMyself({target:i.featureCanvas,coords:{x:o.pageX,y:o.pageY}}),n.stop(o)}},menuTemplate:[{label:"View details",title:"{type} {name}",action:"contentDialog",iconClass:"dijitIconTask",content:dojo.hitch(this,"defaultFeatureDetail")},{label:function(){return"Zoom to this "+(this.feature.get("type")||"feature")},action:function(){var e=this.track.refSeq,t=Math.round(10/this.viewInfo.scale),i=Math.max(e.start,this.feature.get("start")-t),n=Math.min(e.end,this.feature.get("end")+t);this.track.genomeView.setLocation(e,i,n)},iconClass:"dijitIconConnector"},{label:function(){return"Highlight this "+(this.feature.get("type")||"feature")},action:function(){var e=new v({feature:this.feature,tracks:[this.track]});this.track.browser.setHighlightAndRedraw(e)},iconClass:"dijitIconFilter"}]})},setViewInfo:function(e,t,i,n,r,o,s){this.inherited(arguments),this.staticCanvas=a.create("canvas",{className:"static-canvas",style:{height:"100%",cursor:"default",position:"absolute",zIndex:15}},n);var l=this.staticCanvas.getContext("2d"),c=h.getResolution(l,this.browser.config.highResolutionMode);this.staticCanvas.height=this.staticCanvas.offsetHeight*c,this._makeLabelTooltip()},guessGlyphType:function(e){var t={gene:"Gene",mRNA:"ProcessedTranscript",transcript:"ProcessedTranscript",ncRNA:"UnprocessedTranscript",lncRNA:"UnprocessedTranscript",lnc_RNA:"UnprocessedTranscript",miRNA:"UnprocessedTranscript"}[e.get("type")];if(!t){var i=e.children();t=i&&i.length?"Segments":e.get("block_count")||e.get("thick_start")?"UCSC/BED":"Box"}return"JBrowse/View/FeatureGlyph/"+t},fillBlock:function(e){var t=e.blockIndex,n=e.block,r=(e.leftBase,e.rightBase,e.scale);if(!c("canvas"))return this.fatalError="This browser does not support HTML canvas elements.",void this.fillBlockError(t,n,this.fatalError);var o=i.hitch(this,function(o){var a=i.mixin({stats:o,displayMode:this.displayMode,showFeatures:r>=(this.config.style.featureScale||(o.featureDensity||0)/this.config.maxFeatureScreenDensity),showLabels:this.showLabels&&"normal"==this.displayMode&&r>=(this.config.style.labelScale||(o.featureDensity||0)*this.config.style._defaultLabelScale),showDescriptions:this.showLabels&&"normal"==this.displayMode&&r>=(this.config.style.descriptionScale||(o.featureDensity||0)*this.config.style._defaultDescriptionScale)},e);a.showFeatures?(this.setLabel(this.key),this.removeYScale(),this.noYScale=!0,this.fillFeatures(a)):this.config.histograms.store||this.store.getRegionFeatureDensities?(this.noYScale=!1,this.fillHistograms(a)):(this.setLabel(this.key),this.fillTooManyFeaturesMessage(t,n,r),e.finishCallback())});this.store.getGlobalStats(o,dojo.hitch(this,function(t){this._handleError(t,e),e.finishCallback(t)}))},_handleError:function(e,t){"object"==(void 0===e?"undefined":o(e))&&e instanceof g.DataOverflow&&(this.config.histograms.store||this.store.getRegionFeatureDensities)?this.fillHistograms(t):this.inherited(arguments)},_getLayout:function(e){if(!this.layout||this._layoutpitchX!=1/e){var t=this.getConf("layoutPitchY")||4;this.layout=new u({pitchX:1/e,pitchY:t,maxHeight:this.getConf("maxHeight"),displayMode:this.displayMode}),this._layoutpitchX=1/e}return this.layout},_clearLayout:function(){delete this.layout},hideAll:function(){return this._clearLayout(),this.inherited(arguments)},getGlyph:function(e,i,n,r){var o,a,s=this.getConfForFeature("glyph",i);if(o=this.glyphsLoaded[s])n(o);else if(a=this.glyphsBeingLoaded[s])a.push(n);else{var l=this;this.glyphsBeingLoaded[s]=[n],dojo.global.require([s],function(e){if("string"==typeof e)return l.fatalError="could not load glyph "+s,void l.redraw();l.destroyed||(o=l.glyphsLoaded[s]=new e({track:l,config:l.config,browser:l.browser}),t.forEach(l.glyphsBeingLoaded[s],function(e){e(o)}),delete l.glyphsBeingLoaded[s])})}},fillHistograms:function(e){var t=this;this.config.histograms.description?this.setLabel(this.key+' <span class="feature-density">('+this.config.histograms.description+")</span>"):this.setLabel(this.key);var i=this.config.histograms.binsPerBlock||25,n=Math.abs(e.rightBase-e.leftBase)/i,r={ref:this.refSeq.name,start:e.leftBase,end:e.rightBase,basesPerSpan:n,basesPerBin:n,viewAsPairs:this.config.viewAsPairs,viewAsSpans:this.config.viewAsSpans,maxInsertSize:this.config.maxInsertSize},o=this._handleError.bind(this);if(!this.config.histograms.store&&this.store.getRegionFeatureDensities)this.store.getRegionFeatureDensities(r,this._drawHistograms.bind(this,e),function(i){console.log(i),t._handleError(new Error(i.message),e)});else{var a={features:[],stats:{}};this.browser.getStore(this.config.histograms.store,function(i){i.getGlobalStats(function(n){a.stats.max=n.scoreMax,i.getFeatures(r,function(e){a.features.push(e)},function(){t._drawHistograms(e,a),e.finishCallback()},o)},o)})}},_scaleCanvas:function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:e.width,i=arguments.length>2&&void 0!==arguments[2]?arguments[2]:e.height,n=e.getContext("2d"),r=h.getResolution(n,this.browser.config.highResolutionMode);e.width=t*r,e.height=i*r,e.style.width=t+"px",e.style.height=i+"px",n.setTransform(1,0,0,1,0,0),n.scale(r,r)},_drawHistograms:function(e,t){if(!this.noYScale){var i,n="max"in this.config.histograms?this.config.histograms.max:(t.stats||{}).max;if(void 0!==n){if((i=t.features)||t.bins&&(i=this._histBinsToFeatures(e,t))){var r=e.block,o=this.config.histograms.height,s=e.scale,l=e.leftBase,c=this.config.histograms.min;a.empty(r.domNode);var h=r.featureCanvas=a.create("canvas",{height:o,width:r.domNode.offsetWidth+1,style:{cursor:"default",height:o+"px",position:"absolute"},innerHTML:"Your web browser cannot display this type of track.",className:"canvas-track canvas-track-histograms"},r.domNode);this.heightUpdate(o,e.blockIndex);var u=h.getContext("2d");this._scaleCanvas(h),u.fillStyle=this.config.histograms.color;for(var d=0;d<i.length;d++){var f=i[d],g=f.get("score")/n*o,p=Math.ceil((f.get("end")-f.get("start"))*s),b=Math.round((f.get("start")-l)*s);u.fillRect(b,o-g,p,g),g>o&&(u.fillStyle=this.config.histograms.clip_marker_color,u.fillRect(b,0,p,3),u.fillStyle=this.config.histograms.color)}this.makeHistogramYScale(o,c,n)}}else console.warn("no stats.max in hist data, not drawing histogram for block "+e.blockIndex)}},_histBinsToFeatures:function(e,i){var n=parseFloat(i.stats.basesPerBin),r=e.leftBase;return t.map(i.bins,function(e,t){return new w({data:{start:r+t*n,end:r+(t+1)*n,score:e}})})},makeHistogramYScale:function(e,t,i){this.yscale_params&&this.yscale_params.height==e&&this.yscale_params.max==i&&this.yscale_params.min==t||(this.yscale_params={height:e,min:t,max:i},this.makeYScale({min:t,max:i}))},fillFeatures:function(e){var t=this,i=e.blockIndex,n=e.block,r=n.domNode.offsetWidth,o=e.scale,l=e.leftBase,c=e.rightBase,h=e.finishCallback,u=[],d=0,f=new s,g=!1,p=function(i){t._handleError(i,e),h(i)},b=this._getLayout(o),m=Math.round(this.config.maxFeatureGlyphExpansion/o),v={ref:this.refSeq.name,start:Math.max(0,l-m),end:c+m,viewAsPairs:this.config.viewAsPairs,viewAsSpans:this.config.viewAsSpans,maxInsertSize:this.config.maxInsertSize};this.store.getFeatures(v,function(i){if(!t.destroyed&&t.filterFeature(i)){u.push(null),d++;var o=u.length-1;t.getGlyph(e,i,function(t){var a=t.layoutFeature(e,b,i);null===a?n.maxHeightExceeded=!0:a.l>=r||a.l+a.w<0||(u[o]=a),!--d&&g&&f.resolve()},p)}},function(){t.destroyed||(g=!0,d||f.isFulfilled()||f.resolve(),f.then(function(){var r=b.getTotalHeight(),o=n.featureCanvas=a.create("canvas",{height:r,width:n.domNode.offsetWidth+1,style:{cursor:"default",height:r+"px",position:"absolute"},innerHTML:"Your web browser cannot display this type of track.",className:"canvas-track"},n.domNode);o.getContext("2d"),t._scaleCanvas(o),n.maxHeightExceeded&&t.markBlockHeightOverflow(n),t.heightUpdate(r,i),t.renderFeatures(e,u),t.renderClickMap(e,u),h()}))},p)},startZoom:function(){this.zooming=!0,this.inherited(arguments),t.forEach(this.blocks,function(e){try{e.featureCanvas.style.width="100%"}catch(e){}})},endZoom:function(){t.forEach(this.blocks,function(e){try{delete e.featureCanvas.style.width}catch(e){}}),this.clear(),this.inherited(arguments),this.zooming=!1},renderClickMap:function(e,t){var i=e.block,n=new y({h:i.featureCanvas.height,w:i.featureCanvas.width});i.fRectIndex=n,n.addAll(t),i.featureCanvas&&i.featureCanvas.getContext("2d")?(this._attachMouseOverEvents(),"collapsed"==this.displayMode&&this.config.disableCollapsedClick||this._connectEventHandlers(i),this.updateStaticElements({x:this.browser.view.getX()})):console.warn("No 2d context available from canvas")},_attachMouseOverEvents:function(){var e=this.browser.view,t=this;"collapsed"!=this.displayMode||this.config.enableCollapsedMouseover?("collapsed"!=this.displayMode||this.config.enableCollapsedMouseover)&&(this._mouseoverEvent||(this._mouseoverEvent=this.own(l(this.staticCanvas,"mousemove",function(i){i=n.fix(i);var r=e.absXtoBp(i.clientX),o=t.layout.getByCoord(r,void 0===i.offsetY?i.layerY:i.offsetY);t.mouseoverFeature(o,i)}))[0]),this._mouseoutEvent||(this._mouseoutEvent=this.own(l(this.staticCanvas,"mouseout",function(e){t.mouseoverFeature(void 0)}))[0])):(this._mouseoverEvent&&(this._mouseoverEvent.remove(),delete this._mouseoverEvent),this._mouseoutEvent&&(this._mouseoutEvent.remove(),delete this._mouseoutEvent))},_makeLabelTooltip:function(){if(this.showTooltips&&!this.labelTooltip){var e=this.labelTooltip=a.create("div",{className:"featureTooltip",style:{position:"fixed",display:"none",zIndex:19}},this.browser.container);a.create("span",{className:"tooltipLabel",style:{display:"block"}},e),a.create("span",{className:"tooltipDescription",style:{display:"block"}},e)}},_connectEventHandlers:function(e){for(var t in this.eventHandlers){var i=this.eventHandlers[t];(function(t,i){var r=this;e.own(l(this.staticCanvas,t,function(t){t=n.fix(t);var o=r.browser.view.absXtoBp(t.clientX);if(e.containsBp(o)){var a=r.layout.getByCoord(o,void 0===t.offsetY?t.layerY:t.offsetY);if(a){var s=e.fRectIndex.getByID(a.id());i.call({track:r,feature:a,fRect:s,block:e,callbackArgs:[r,a,s]},a,s,e,r,t)}}}))}).call(this,t,i)}},getRenderingContext:function(e){if(!e.block||!e.block.featureCanvas)return null;try{return e.block.featureCanvas.getContext("2d")}catch(e){return console.error(e,e.stack),null}},renderFeatures:function(e,i){var n=this.getRenderingContext(e);if(n){var r=this;t.forEach(i,function(e){e&&r.renderFeature(n,e)})}},mouseoverFeature:function(e,n){if(this.lastMouseover!=e){if(n)var r=this.browser.view.absXtoBp(n.clientX);this.labelTooltip&&(this.labelTooltip.style.display="none"),t.forEach(this.blocks,function(t,o){if(t){var a=this.getRenderingContext({block:t,leftBase:t.startBase,scale:t.scale});if(a){if(this.lastMouseover&&t.fRectIndex){var s=t.fRectIndex.getByID(this.lastMouseover.id());s&&this.renderFeature(a,s)}if(t.tooltipTimeout&&window.clearTimeout(t.tooltipTimeout),e){var l=t.fRectIndex&&t.fRectIndex.getByID(e.id());if(!l)return;if(t.containsBp(r)){var c=dojo.hitch(this,function(){if(this.labelTooltip){var t=l.label||l.glyph.makeFeatureLabel(e),r=l.description||l.glyph.makeFeatureDescriptionLabel(e);if(t||r){this.ignoreTooltipTimeout||(this.labelTooltip.style.left=n.clientX+"px",this.labelTooltip.style.top=n.clientY+15+"px"),this.ignoreTooltipTimeout=!0,this.labelTooltip.style.display="block";var o=this.labelTooltip.childNodes[0],a=this.labelTooltip.childNodes[1];if(this.config.onClick&&this.config.onClick.label){var s=i.mixin({track:this,feature:e,callbackArgs:[this,e]});o.style.display="block",o.style.font=t.font,o.style.color=t.fill;var c=this.template(e,this._evalConf(s,this.config.onClick.label,"label"));o.innerHTML=this.config.unsafeMouseover?c:h.escapeHTML(c)}else t?(o.style.display="block",o.style.font=t.font,o.style.color=t.fill,o.innerHTML=this.config.unsafeMouseover?t.text:h.escapeHTML(t.text)):(o.style.display="none",o.innerHTML="(no label)"),r?(a.style.display="block",a.style.font=r.font,a.style.color=r.fill,a.innerHTML=this.config.unsafeMouseover?r.text:h.escapeHTML(r.text)):(a.style.display="none",a.innerHTML="(no description)")}}});this.ignoreTooltipTimeout?c():t.tooltipTimeout=window.setTimeout(c,600)}l.glyph.mouseoverFeature(a,l),this._refreshContextMenu(l)}else t.tooltipTimeout=window.setTimeout(dojo.hitch(this,function(){this.ignoreTooltipTimeout=!1}),200)}}},this),this.lastMouseover=e}},cleanupBlock:function(e){this.inherited(arguments),e&&this.layout&&this.layout.discardRange(e.startBase,e.endBase)},renderFeature:function(e,t){t.glyph.renderFeature(e,t)},_trackMenuOptions:function(){var e=this.inherited(arguments),t=this;return this.displayModeMenuItems=["normal","compact","collapsed"].map(function(e){return{label:e,type:"dijit/CheckedMenuItem",title:"Render this track in "+e+" mode",checked:t.displayMode==e,onClick:function(){t.displayMode=e,t._clearLayout(),t.hideAll(),t.genomeView.showVisibleBlocks(!0),t.makeTrackMenu(),t.browser.cookie("track-"+t.name,t.displayMode)}}}),dojo.hitch(this,function(){for(var e in this.displayModeMenuItems)this.displayModeMenuItems[e].checked=this.displayMode==this.displayModeMenuItems[e].label}),e.push.apply(e,[{type:"dijit/MenuSeparator"},{label:"Display mode",iconClass:"dijitIconPackage",title:"Make features take up more or less space",children:this.displayModeMenuItems},{label:"Show labels",type:"dijit/CheckedMenuItem",checked:!!("showLabels"in this?this.showLabels:this.config.style.showLabels),onClick:function(e){t.showLabels=this.checked,t.changed()}}]),e},_exportFormats:function(){return[{name:"GFF3",label:"GFF3",fileExt:"gff3"},{name:"BED",label:"BED",fileExt:"bed"},{name:"SequinTable",label:"Sequin Table",fileExt:"sqn"}]},updateStaticElements:function(e){var t=this;if(this.inherited(arguments),this.updateYScaleFromViewDimensions(e),e.hasOwnProperty("x")){var i=this.staticCanvas.getContext("2d"),n=h.getResolution(i,this.browser.config.highResolutionMode);this.staticCanvas.width=this.browser.view.elem.clientWidth*n,this.staticCanvas.style.width=this.browser.view.elem.clientWidth+"px",this.staticCanvas.style.left=e.x+"px",i.setTransform(1,0,0,1,0,0),i.scale(n,n),i.clearRect(0,0,this.staticCanvas.width,this.staticCanvas.height);var r={minVisible:this.browser.view.minVisible(),maxVisible:this.browser.view.maxVisible(),bpToPx:dojo.hitch(this.browser.view,"bpToPx"),lWidth:this.label.offsetWidth};this.blocks.forEach(function(e){if(e&&e.fRectIndex&&!t.zooming){var n=e.fRectIndex.byID;for(var o in n){var a=n[o];a.glyph.updateStaticElements(i,a,r)}}})}},heightUpdate:function(e,t){if(this.inherited(arguments),this.staticCanvas){var i=h.getResolution(this.staticCanvas.getContext("2d"),this.browser.config.highResolutionMode);this.staticCanvas.height=this.staticCanvas.offsetHeight*i}},destroy:function(){this.destroyed=!0,a.destroy(this.staticCanvas),delete this.staticCanvas,delete this.layout,delete this.glyphsLoaded,this.inherited(arguments)}})}.apply(null,n))||(e.exports=r)},363:function(e,t,i){var n,r;n=[i(575),i(624),i(355)],void 0===(r=function(e,t,i){return e(i,{_defaultConfig:function(){return this._mergeConfigs(this.inherited(arguments),{style:{connectorColor:"#333",connectorThickness:1,borderColor:"rgba( 0, 0, 0, 0.3 )"},subParts:function(){return!0},subSubParts:function(){return!0}})},renderFeature:function(e,t){"collapsed"!=this.track.displayMode&&e.clearRect(Math.floor(t.l),t.t,Math.ceil(t.w),t.h),this.renderConnector(e,t),this.renderSegments(e,t),this.renderLabel(e,t),this.renderDescription(e,t),this.renderArrowhead(e,t)},renderConnector:function(e,t){var i=this.getStyle(t.f,"connectorColor");if(i){e.fillStyle=i;var n=this.getStyle(t.f,"connectorThickness");e.fillRect(t.rect.l,Math.round(t.rect.t+(t.rect.h-n)/2),t.rect.w,n)}},renderSegments:function(e,t){var i=this,n=this._getSubparts(t.f);if(n.length)for(var r=t.f,o=function(e,n){return"height"===n?i._getFeatureHeight(t.viewInfo,e):i.getStyle(e,n)||i.getStyle(r,n)},a=0;a<n.length;++a)this.renderSegment(e,t.viewInfo,n[a],t.t,t.rect.h,t.f,o)},renderSegment:function(e,i,n,r,o,a,s){var l=this;this.renderBox(e,i,n,r,o,a,s);var c=this._getSubSubparts(n);if(c.length){var h=function(e,i){var n=s(e,"subSubPart_"+i);if(n)return n;var r=s(e,i);if(r&&(i.includes("color")||i.includes("Color"))){var o=t.fromString(r);o&&(r=String(t.blendColors(o,t.fromArray([0,0,0,1]),.25)))}return r};c.forEach(function(t){l.renderBox(e,i,t,r,o,n,h)})}},_getSubparts:function(e){return(e.children()||[]).filter(this._filterSubpart.bind(this))},_getSubSubparts:function(e){return(e.children()||[]).filter(this._filterSubSubpart.bind(this))},_filterSubpart:function(e){return this._subpartsFilter||(this._subpartsFilter=this._makeSubpartsFilter("subParts")),this._subpartsFilter(e)},_filterSubSubpart:function(e){return this._subSubpartsFilter||(this._subSubpartsFilter=this._makeSubpartsFilter("subSubParts")),this._subSubpartsFilter(e)},_makeSubpartsFilter:function(){var e=arguments.length>0&&void 0!==arguments[0]?arguments[0]:"subParts",t=this.getConf(e);if("string"==typeof t&&(t=t.split(/\s*,\s*/)),Array.isArray(t)){var i=t.map(function(e){return e.toLowerCase()});return function(e){return i.includes(e.get("type").toLowerCase())}}return"function"==typeof t?t:function(){return!0}}})}.apply(null,n))||(e.exports=r)},364:function(e,t,i){var n,r;n=[i(575),i(577),i(587),i(342),i(349)],void 0===(r=function(e,t,i,n,r){return e(r,{_estimateGlobalStats:function(e){var t=this,i=arguments;return function(e){return function(){var t=e.apply(this,arguments);return new Promise(function(e,i){return function n(r,o){try{var a=t[r](o),s=a.value}catch(e){return void i(e)}if(!a.done)return Promise.resolve(s).then(function(e){n("next",e)},function(e){n("throw",e)});e(s)}("next")})}}(regeneratorRuntime.mark(function n(){var r,o,a,s,l;return regeneratorRuntime.wrap(function(n){for(;;)switch(n.prev=n.next){case 0:if(e=e||t.refSeq,r=void 0,!t.indexedData){n.next=8;break}return n.next=5,t.indexedData.lineCount(t.browser.regularizeReferenceName(e.name));case 5:r=n.sent,n.next=14;break;case 8:if(!t.bam){n.next=14;break}return o=t.browser.regularizeReferenceName(e.name),a=t.bam.chrToIndex&&t.bam.chrToIndex[o],n.next=13,t.bam.index.lineCount(a,!0);case 13:r=n.sent;case 14:if(-1!=r){n.next=16;break}return n.abrupt("return",t.inherited("_estimateGlobalStats",i));case 16:return s=(t.getConf("topLevelFeaturesPercent")||100)/100,l=r/(e.end-e.start)*s,n.abrupt("return",{featureDensity:l});case 19:case"end":return n.stop()}},n,t)}))()}})}.apply(null,n))||(e.exports=r)},365:function(e,t,i){var n,r;n=[i(575)],void 0===(r=function(e){return e(null,{getRegionFeatureDensities:function(e,t,i){var n=this,r=void 0,o=void 0;if(this.scoreMax=this.scoreMax||0,e.numBins)r=e.numBins,o=(e.end-e.start)/r;else{if(!e.basesPerBin)throw new Error("numBins or basesPerBin arg required for getRegionFeatureDensities");o=e.basesPerBin||e.ref.basesPerBin,r=Math.ceil((e.end-e.start)/o)}!function(e,t){for(var i=0;i<t.length;i++)if(t[i].basesPerBin>=e)return t[i]}(o,[]);var a={};a.basesPerBin=o,a.max=0,Math.floor(e.start/o);for(var s=[],l=1/o,c=0;c<r;c++)s[c]=0;this._getFeatures(e,function(t){for(var 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n,r;n=[i(575),i(577),i(576),i(630),i(579),i(580),i(633),i(348),i(353),i(389),i(369),i(334),i(341),i(372)],void 0===(r=function(e,t,i,n,r,o,a,s,l,c,h,u,d,f){return e([s,l,c],{constructor:function(e){this.trackPadding=e.trackPadding||0,"style"in this.config||(this.config.style={}),this.store=e.store,this._setupEventHandlers()},_defaultConfig:function(){return{maxExportSpan:5e5,autoscale:"global",logScaleOption:!0}},_setupEventHandlers:function(){var e=dojo.clone(this.config.events||{});e.click||(this.config.style||{}).linkTemplate&&(e.click={action:"newWindow",url:this.config.style.linkTemplate}),this.eventHandlers=function(){var t=dojo.clone(e);for(var i in this.config){var n=i.replace(/^on(?=[A-Z])/,"");n!=i&&(t[n.toLowerCase()]=this.config[i])}for(i in t)"string"==typeof t[i]&&(t[i]={url:t[i]});return t}.call(this),this.eventHandlers.click&&(this.eventHandlers.click=this._makeClickHandler(this.eventHandlers.click))},_getScaling:function(e,t,i){this._getScalingStats(e,dojo.hitch(this,function(e){if(this.lastScaling&&this.lastScaling.sameStats(e))t(this.lastScaling);else try{this.lastScaling=new f(this.config,e),t(this.lastScaling)}catch(e){i(e)}}),i)},_getScalingStats:function(e,t,n){if(f.prototype.needStats(this.config)){if("local"==this.config.autoscale){var r=i.mixin({scale:e.scale},this.browser.view.visibleRegion());return r.start=Math.ceil(r.start),r.end=Math.floor(r.end),this.getRegionStats.call(this,r,t,n)}return this.getGlobalStats.call(this,t,n)}return t(null),null},getFeatures:function(e,t,i){this.store.getFeatures.apply(this.store,arguments)},getGlobalStats:function(e,t){this.store.getGlobalStats(e,t)},getRegionStats:function(e,t,i){this.store.getRegionStats(e,t,i)},_canvasWidth:function(e){return Math.ceil((e.endBase-e.startBase)*e.scale)},_canvasHeight:function(){return parseInt((this.config.style||{}).height)||100},_getBlockFeatures:function(e){var i=this,n=(e.blockIndex,e.block),r=e.leftBase,o=e.rightBase,a=e.scale,s=e.finishCallback||function(){},l=this._canvasWidth(e.block),c=[];this.getFeatures({ref:this.refSeq.name,basesPerSpan:1/a,scale:a,start:r,end:o+1},function(e){i.filterFeature(e)&&c.push(e)},dojo.hitch(this,function(e){if(n.domNode&&n.domNode.parentNode){var i=t.map(c,function(e){return this._featureRect(a,r,l,e)},this);n.features=c,n.featureRects=i,n.pixelScores=this._calculatePixelScores(this._canvasWidth(n),c,i),e&&e.maskingSpans&&(n.maskingSpans=e.maskingSpans),s()}}),dojo.hitch(this,function(t){console.error(t.stack||""+t,t),this._handleError(t,e)}))},renderBlock:function(e){var t=e.block;if(this.scaling.compare(t.scaling)&&t.pixelScores){t.scaling=this.scaling,r.empty(t.domNode);try{dojo.create("canvas").getContext("2d").fillStyle="red"}catch(i){return this.fatalError="This browser does not support HTML canvas elements.",void 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p=t.endBase-t.startBase;switch(s.style.position="absolute",s.style.left=(s.startBase-t.startBase)/p*100+"%",this.config.align){case"top":s.style.top="0px";break;case"bottom":default:s.style.bottom=this.trackPadding+"px"}}}},fillBlock:function(e){var t=this;this.heightUpdate(this._canvasHeight(),e.blockIndex);var i=e.finishCallback||function(){};e.finishCallback=function(){t.updateGraphs(e,i)},this._getBlockFeatures(e)},updateGraphs:function(e,i){var n=this;this._getScaling(e,function(e){n.scaling=e,t.forEach(n.blocks,function(e,t){e&&e.domNode.parentNode&&n.renderBlock({block:e,blockIndex:t})}),i()},function(t){n._handleError(t,e)})},_draw:function(e,t,i,n,r,o,a,s,l,c){this._preDraw(e,t,i,n,r,o,a,s),this._drawFeatures(e,t,i,n,r,l,s),c&&this._maskBySpans(e,t,i,n,r,l,s,c),this._postDraw(e,t,i,n,r,o,a,s)},startZoom:function(e,t,i){},endZoom:function(e,t){this.clear()},_featureRect:function(e,t,i,n){var 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r=n.pixelScores,o=n.canvas,a=dojo.position(o),s=(i.pageX,i.pageX-a.x);this._showPixelValue(this.scoreDisplay.flag,r[Math.round(s)])&&(this.scoreDisplay.flag.style.display="block",this.scoreDisplay.pole.style.display="block",this.scoreDisplay.flag.style.left=i.clientX+"px",this.scoreDisplay.flag.style.top=a.y+"px",this.scoreDisplay.pole.style.left=i.clientX+"px",this.scoreDisplay.pole.style.height=a.h+"px",this.scoreDisplay.pole.style.top=a.y+"px")}},_showPixelValue:function(e,t){return"number"==typeof t?(e.innerHTML=parseFloat(t.toPrecision(6)),!0):!(!t||"number"!=typeof t.score||(e.innerHTML=parseFloat(t.score.toPrecision(6)),0))},_exportFormats:function(){return[{name:"bedGraph",label:"bedGraph",fileExt:"bedgraph"},{name:"Wiggle",label:"Wiggle",fileExt:"wig"},{name:"GFF3",label:"GFF3",fileExt:"gff3"}]},_trackMenuOptions:function(){var e=this,t=this.inherited(arguments)||[];return t.push({label:"Change height",iconClass:"jbrowseIconVerticalResize",action:function(){new h({height:e._canvasHeight(),setCallback:function(t){e.trackHeightChanged=!0,e.updateUserStyles({height:t})}}).show()}}),this.config.logScaleOption&&t.push({label:"Log scale",type:"dijit/CheckedMenuItem",checked:!("log"!=this.config.scale),onClick:function(t){this.checked?e.config.scale="log":e.config.scale="linear",e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),t},_fillRectMod:function(e,t,i,n,r){var o=window.devicePixelRatio||1,a=n;"disabled"!=this.browser.config.highResolutionMode&&o-Math.floor(o)>0&&(a=n+.3),e.fillRect(t,i,a,r)}})}.apply(null,n))||(e.exports=r)},372:function(e,t,i){var n,r;n=[i(576),i(334),i(351)],void 0===(r=function(e,t,i){return t.fastDeclare({needStats:function(e){return!("min_score"in e&&"max_score"in e&&"z_score"!=e.bicolor_pivot&&"mean"!=e.bicolor_pivot&&"z_score"!=e.scale)},constructor:function(t,n){var r=this.needStats(t);if(r&&!n)throw"No stats object provided, cannot calculate 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t?"mean"==t.bicolor_pivot?n.scoreMean||0:"zero"==t.bicolor_pivot?0:parseFloat(t.bicolor_pivot):"z_score"==t.scale?n.scoreMean||0:"log"==t.scale?1:0;e.mixin(this,{offset:l,min:a,max:s,range:s-a,origin:c,_statsFingerprint:i.objectFingerprint(n)}),r&&(this.scoreMean=n.scoreMean,this.scoreStdDev=n.scoreStdDev),this.normalize=function(e){switch(t.scale){case"z_score":return function(e){return(e+this.offset-this.scoreMean)/this.scoreStdDev-this.min/this.range};case"log":return function(e){return(this.log(e+this.offset)-this.min)/this.range};case"linear":default:return function(e){return(e+this.offset-this.min)/this.range}}}()},log:function(e){return e?Math.log(Math.abs(e))*(e<0?-1:1):0},compare:function(e){if(!e)return 1;var t=this;return t.offset-e.offset||t.min-e.min||t.max-e.max||t.range-e.range||t.origin-e.origin},sameStats:function(e){return this._statsFingerprint==i.objectFingerprint(e)}})}.apply(null,n))||(e.exports=r)},373:function(e,t,i){var 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i.mixin({},this.inherited(arguments),{hideDuplicateReads:{desc:"Hide PCR/Optical duplicate reads",func:function(e){return!(!0===e.get("duplicate"))}},hideQCFailingReads:{desc:"Hide reads failing vendor QC",func:function(e){return!(!0===e.get("qc_failed"))}},hideSecondary:{desc:"Hide secondary alignments",func:function(e){return!(!0===e.get("secondary_alignment"))}},hideSupplementary:{desc:"Hide supplementary alignments",func:function(e){return!(!0===e.get("supplementary_alignment"))}},hideMissingMatepairs:{desc:"Hide reads with missing mate pairs",func:function(e){return!(e.get("multi_segment_template")&&e.get("multi_segment_next_segment_unmapped"))}},hideImproperPairs:{desc:"Hide reads that with improper pairs",func:function(e){return!(e.get("multi_segment_template")&&!e.get("multi_segment_all_aligned"))}},hideUnmapped:{desc:"Hide unmapped reads",func:function(e){return!(!0===e.get("unmapped"))}},hideForwardStrand:{desc:"Hide reads aligned to the forward 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g=!1,p=[],b=h;b<r.length;b++)u==(v=r[b]).start&&p.push(v);p.sort(function(e,t){return"insertion"==e.type?-1:"deletion"==e.type?1:"mismatch"==e.type?1:"skip"==e.type?1:0});for(var m=0;m<p.length;m++){var v;if(h++,"softclip"==(v=p[m]).type){for(var w=0;w<v.cliplen;w++)s+=o[d+w],l+=" ",c+=".";d+=v.cliplen,g=!0}else if("insertion"==v.type){for(w=0;w<+v.base;w++)s+=o[d+w],l+=" ",c+="-";d+=+v.base||v.base.length,g=!0}else if("deletion"==v.type){for(w=0;w<v.length;w++)s+="-",l+=" ",c+=(v.seq||{})[w]||".";u+=v.length,g=!0}else if("skip"==v.type){for(w=0;w<Math.min(v.length,1e4);w++)s+=".",l+=" ",c+="N";u+=v.length,g=!0}else"mismatch"==v.type&&(s+=v.base,l+=" ",c+=v.altbase,d++,u++,g=!0)}g||(s+=o[d],l+="|",c+=o[d],u++,d++)}if(this.config.renderPrettyAlignment){var y,k,_,x;y=k=_=x="";var S=0,j=r.length&&"softclip"==r[0].type?a-r[0].cliplen:a,C=this.config.renderAlignmentWidth||50;for(f=0;f<s.length;f+=C){y=s.substring(f,f+C),k=l.substring(f,f+C),_=c.substring(f,f+C);var A=j.toString().replace(/./g," "),T=y.length-(y.match(/[-N\.]/g)||[]).length,B=_.length-(_.match(/[-]/g)||[]).length;x+="Query    "+this.pad(A,S,!0)+": "+y+" "+(S+T)+"<br>",x+="         "+A+"  "+k+"   <br>",x+="Ref:     "+j+": "+_+" "+(j+B)+"  <br><br>",S+=T,j+=B}dojo.create("div",{className:"renderTable",innerHTML:'<h2 class="sectiontitle">Matches</h2><div style="font-family: Courier; white-space: pre;">'+x+"</div>"},e)}else this.config.renderAlignment&&dojo.create("div",{className:"renderTable",innerHTML:'<h2 class="sectiontitle">Matches</h2><div style="font-family: Courier; white-space: pre;">Query: '+s+"   <br>       "+l+"   <br>Ref:   "+c+"   </div>"},e);return{val1:s,val2:l,val3:c}}dojo.create("div",{className:"renderTable",innerHTML:'<h2 class="sectiontitle">Matches</h2><div style="font-family: Courier; white-space: pre;">No sequence on feature, cannot render alignment</div>'},e)},pad:function(e,t,i){return void 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t=e.blockIndex,i=e.block,n=e.leftBase,r=e.rightBase,o=e.stripeWidth,a=Math.abs(r-n),s=a/this.numBins,l=this;this.store.getRegionFeatureDensities({ref:this.refSeq.name,start:e.leftBase,end:e.rightBase,basesPerBin:s},function(e){if("histograms"==l._fillType){for(var n=e.bins,r=0,c=0;c<l.numBins;c++)"number"==typeof n[c]&&isFinite(n[c])&&(r=Math.max(r,n[c]));var h,u=!!e.stats&&e.stats.mean/e.stats.max<.01,d=e.stats?100/(u?Math.log(e.stats.max):e.stats.max):2,f={basesPerBin:s,pxPerCount:d,logScale:u,stats:e.stats};for(c=0;c<l.numBins;c++)"number"==typeof n[c]&&isFinite(n[c])&&((h=document.createElement("div")).className="hist feature-hist "+l.config.style.className+"-hist",h.style.cssText="left: "+c/l.numBins*100+"%; height: "+f.pxPerCount*(f.logScale?Math.log(n[c]):n[c])+"px;bottom: "+l.trackPadding+"px;width: "+(100/l.numBins-100/o)+"%;"+(l.config.style.histCss?l.config.style.histCss:""),h.setAttribute("value",n[c]),m.is_ie6&&h.appendChild(document.createComment()),i.domNode.appendChild(h));l.heightUpdate(f.pxPerCount*(f.logScale?Math.log(r):r),t),l.makeHistogramYScale(a,f,e)}},dojo.hitch(this,"fillBlockError",t,i)),e.finishCallback()},endZoom:function(e,t){this.clear()},updateStaticElements:function(e){this.inherited(arguments),this.updateYScaleFromViewDimensions(e),this.updateFeatureLabelPositions(e),this.updateFeatureArrowPositions(e)},updateFeatureArrowPositions:function(e){if("x"in e)for(var t=this.browser.view.minVisible(),i=this.browser.view.maxVisible(),n=this.blocks,r=0;r<n.length;r++){var o=n[r];if(o)for(var a=o.domNode.childNodes,s=0;s<a.length;s++){var l=a[s];if(l.feature){var c=l.feature,h=l._containerStart,u=l._containerEnd,d=c.get("strand");if(d){var f,g,p=c.get("start"),b=c.get("end"),m=Math.max(p,h),v=Math.min(b,u);if(d<0&&b>t){var w="minus-"+this.config.style.arrowheadClass;g=l.childNodes;for(var y=0;y<g.length;y++)"string"==typeof(f=g[y]).className&&f&&f.className&&f.className.indexOf(w)>=0&&(f.style.left=(p<t?o.bpToX(t)-o.bpToX(m):-this.minusArrowWidth)+"px")}else if(d>0&&p<i){var k="plus-"+this.config.style.arrowheadClass;for(g=l.childNodes,y=0;y<g.length;y++)"string"==typeof(f=g[y]).className&&f&&f.className&&f.className.indexOf(k)>=0&&(f.style.right=(b>i?o.bpToX(v)-o.bpToX(i-2):-this.plusArrowWidth)+"px")}}}}}},updateFeatureLabelPositions:function(e){var t=this.browser._showLabels;"x"in e&&i.forEach(this.blocks,function(e,n){if(e&&this.label){var r=100*(this.label.offsetLeft+(t?this.label.offsetWidth:0)-e.domNode.offsetLeft)/e.domNode.offsetWidth+2;if(r){var o=e.endBase-e.startBase;i.forEach(e.domNode.childNodes,function(t){if(t.label){var i=t.label,n=t.feature,a=parseInt(n.get("start"));a=100*(a-e.startBase)/o;var s=parseInt(n.get("end"));s=100*((s-e.startBase)/o-i.offsetWidth/e.domNode.offsetWidth),i.style.left=Math.max(a,Math.min(r,s))+"%"}},this)}}},this)},fillBlock:function(e){var t=e.blockIndex,i=e.block,n=e.leftBase,r=e.rightBase,o=e.scale;e.containerStart,e.containerEnd,this.refSeq.name,this.store.getGlobalStats(dojo.hitch(this,function(a){var s=a.featureDensity,l=this.config.style.histScale||s*this.config.style._defaultHistScale,c=this.config.style.featureScale||s/this.config.maxFeatureScreenDensity,h=Math.abs(n-r);this._updatedLabelForBlockSize!=h&&(this.store.getRegionFeatureDensities&&o<l?this.setLabel(this.key+' <span class="feature-density">per '+m.addCommas(Math.round(h/this.numBins))+" bp</span>"):this.setLabel(this.key),this._updatedLabelForBlockSize=h),this.store.getRegionFeatureDensities&&o<l?(this._fillType="histograms",this.fillHistograms(e)):o<c?(this.fillTooManyFeaturesMessage(t,i,o),e.finishCallback()):(this.removeYScale(),this._fillType="features",this.fillFeatures(dojo.mixin({stats:a},e)))}),dojo.hitch(this,"fillBlockError",t,i))},makeHistogramYScale:function(e,t,i){if(t.logScale)console.error("Log histogram scale axis labels not yet implemented.");else{var n=this.height/t.pxPerCount;n=t.logScale?Math.log(n):n,this.yscale&&this.yscale_params&&this.yscale_params.maxval==n&&this.yscale_params.height==this.height&&this.yscale_params.blockbp==e||(this.removeYScale(),this.makeYScale({min:0,max:n}),this.yscale_params={height:this.height,blockbp:e,maxval:n})}},destroy:function(){this._clearLayout(),this.inherited(arguments)},cleanupBlock:function(e){if(e&&(this.layout&&this.layout.discardRange(e.startBase,e.endBase),e.featureNodes))for(var t in e.featureNodes){var n=e.featureNodes[t];i.forEach("track,feature,callbackArgs,_labelScale,_descriptionScale".split(","),function(e){m.removeAttribute(n,e)}),"label"in n&&(i.forEach("track,feature,callbackArgs".split(","),function(e){m.removeAttribute(n.label,e)}),m.removeAttribute(n,"label"))}this.inherited(arguments)},transfer:function(e,t,i,n,r){if(e&&t){var o,a=t.startBase,s=t.endBase,l=e.startBase<t.startBase?e.rightOverlaps:e.leftOverlaps;l=l||[];for(var c=0;c<l.length;c++)if((o=e.featureNodes[l[c]])&&o.label&&o.label.parentNode&&o.label.parentNode.removeChild(o.label),o&&o.feature&&o.layoutEnd>a&&o.feature.get("start")<s){o.parentNode.removeChild(o),delete e.featureNodes[l[c]];var h=this.addFeatureToBlock(o.feature,l[c],t,i,o._labelScale,o._descriptionScale,n,r);o.booleanCovs&&this._maskTransfer(h,o,n,r)}}},_maskTransfer:function(e,t,i,n){for(var r=[];e.firstChild;)r.push(e.firstChild),e.removeChild(e.firstChild);var o=e.featureEdges.s,s=e.featureEdges.e;for(var l in t.booleanCovs)if(t.booleanCovs.hasOwnProperty(l)){var c=t.booleanCovs[l].span.s,h=t.booleanCovs[l].span.e;if(h<i||c>n)continue;t.booleanCovs[l].style.left=100*(c-o)/(s-o)+"%",t.booleanCovs[l].style.width=100*(h-c)/(s-o)+"%",e.appendChild(t.booleanCovs[l])}if(a(".basicSubfeature",t).forEach(function(t,r,a){var l=t.subfeatureEdges.s,c=t.subfeatureEdges.e;c<i||l>n||(t.style.left=100*(l-o)/(s-o)+"%",t.style.width=100*(c-l)/(s-o)+"%",e.appendChild(t))}),this.config.style.arrowheadClass){var u=this.config.style.arrowheadClass;a(".minus-"+u+", .plus-"+u,t).forEach(function(t,i,n){e.appendChild(t)})}e.className="basic",e.oldClassName=t.oldClassName,e.booleanCovs=t.booleanCovs},fillFeatures:function(e){var t=this,i=e.blockIndex,n=e.block,r=e.leftBase,o=e.rightBase,a=e.scale,s=e.stats,l=e.containerStart,c=e.containerEnd,h=e.finishCallback;this.browser,this.scale=a,n.featureNodes={},this.haveMeasurements||(this.measureStyles(),this.haveMeasurements=!0);var u=this.config.style.labelScale||s.featureDensity*this.config.style._defaultLabelScale,d=this.config.style.descriptionScale||s.featureDensity*this.config.style._defaultDescriptionScale,f=this;this.store.getFeatures({ref:this.refSeq.name,start:r,end:o},function(e){var i=e.id();if(!t._featureIsRendered(i)&&t.filterFeature(e)){if("function"==typeof t.renderFilter)return t._warnedAboutRenderFilterDeprecation||(console.warn("the HTMLFeatures.renderFilter is deprecated, please use the existing feature filtering functionality (addFeatureFilter)"),t._warnedAboutRenderFilterDeprecation=!0),void(1===t.renderFilter(e)&&t.addFeatureToBlock(e,i,n,a,u,d,l,c));t.addFeatureToBlock(e,i,n,a,u,d,l,c)}},function(e){if(f.heightUpdate(f._getLayout(a).getTotalHeight(),i),e&&e.maskingSpans){var t=[];t[0]={start:r};var n=0;for(var s in e.maskingSpans)e.maskingSpans.hasOwnProperty(s)&&(s=e.maskingSpans[s],t[n].end=s.start,t[++n]={start:s.end});t[n].end=o,t[n].end<=t[n].start&&t.splice(n,1),t[0].end<=t[0].start&&t.splice(0,1),f.maskBySpans(t,e.maskingSpans)}h()},function(e){console.error(e,e.stack),f.fillBlockError(i,n,e),h()})},addFeatureToBlock:function(e,t,i,n,r,o,a,s){var l=this;if((void 0===this.browser.config.inferHTMLSubfeatures||!0===this.browser.config.inferHTMLSubfeatures)&&"gene"==e.get("type")&&e.get("subfeatures")){var c=dojo.create("div"),h=e.get("subfeatures");return h?(h.forEach(function(e){l._featureIsRendered(t+"_"+l.getId(e))||(u=l.renderFeature(e,t+"_"+l.getId(e),i,n,r,o,a,s))&&c.appendChild(u)}),i.domNode.appendChild(c),this.config.style.centerChildrenVertically&&c.childNodes.forEach(function(e){l._centerChildrenVertically(e)}),c):null}var u=this.renderFeature(e,t,i,n,r,o,a,s);return u?(i.domNode.appendChild(u),this.config.style.centerChildrenVertically&&this._centerChildrenVertically(u),u):null},fillBlockTimeout:function(e,t){this.inherited(arguments),t.featureNodes={}},_featureIsRendered:function(e){for(var t=this.blocks,i=0;i<t.length;i++)if(t[i]&&t[i].featureNodes&&t[i].featureNodes[e])return!0;return!1},maskBySpans:function(e,t){var i=this.blocks;for(var n in i)if(i.hasOwnProperty(n)){if(!i[n])continue;var r=i[n],o=(r.startBase,r.endBase,function(e,t,i,n){var r=Math.max(e,i),o=Math.min(t,n);return r<o&&{s:r,e:o}}),a=function(e,t,i,n){return!!o(e,t,i,n)&&{s:Math.min(e,i),e:Math.max(t,n)}},s=function(e,t,i,n,r){var o=dojo.create("div"),a=i.featureEdges?i.featureEdges.s:i.subfeatureEdges.s,s=i.featureEdges?i.featureEdges.e:i.subfeatureEdges.e;return o.span={s:e,e:t},o.className=n?u.className==r?u.oldClassName+" Boolean-transparent":u.className+" Boolean-transparent":u.className==r?u.oldClassName:u.className,o.booleanDiv=!0,o.style.left=100*(e-a)/(s-a)+"%",o.style.top="0px",o.style.width=100*(t-e)/(s-a)+"%",o},l=function e(t,i,n,r,o,l){for(var c in l=l||!1,n.childNodes)if(n.childNodes[c]&&n.childNodes[c].booleanDiv){var h=n.childNodes[c].span.s,u=n.childNodes[c].span.e;if(h<=t&&u>=i){l=!0;break}var d=a(t,i,h,u);if(d){var f=s(d.s,d.e,n,r,o),g=n.booleanCovs.indexOf(n.childNodes[c]);n.removeChild(n.childNodes[c]),n.booleanCovs.splice(g,1),n.appendChild(f),n.booleanCovs.push(f),l=!0,e(d.s,d.e,n,r,o,!0);break}}l||(f=s(t,i,n,r,o),n.appendChild(f),n.booleanCovs.push(f))},c=function(e,t,i,n,r,a){for(var s in i.booleanCovs||(i.booleanCovs=[]),r)r.hasOwnProperty(s)&&(c=o(e,t,r[s].start,r[s].end))&&l(c.s,c.e,i,!1,a);for(var s in n){var c;n.hasOwnProperty(s)&&(c=o(e,t,n[s].start,n[s].end))&&l(c.s,c.e,i,!0,a)}i.oldClassName=i.className==a?i.oldClassName:i.className,i.className=a};for(var h in r.featureNodes)if(r.featureNodes.hasOwnProperty(h)){var u=r.featureNodes[h];if(!u.feature){c(u.subfeatureEdges.s,u.subfeatureEdges.e,u,t,e,"basicSubfeature");continue}c(u.feature.get("start"),u.feature.get("end"),u,t,e,"basic")}}},measureStyles:function(){var e,t=this.browser.container,i=document.createElement("div");if(i.className="feature-label",i.style.height="auto",i.style.visibility="hidden",i.appendChild(document.createTextNode("1234567890")),t.appendChild(i),this.labelHeight=i.clientHeight,this.labelWidth=i.clientWidth/10,t.removeChild(i),(i=document.createElement("div")).className="feature "+this.config.style.className+" plus-"+this.config.style.className+" plus-"+this.config.style.className+"1",this.config.style.featureCss&&(i.style.cssText=this.config.style.featureCss),i.style.visibility="hidden",m.is_ie6&&i.appendChild(document.createComment("foo")),t.appendChild(i),e=r.getMarginBox(i),this.glyphHeight=Math.round(e.h),this.padding=this.defaultPadding+e.w,t.removeChild(i),this.config.style.arrowheadClass){var n=document.createElement("div");n.className="plus-"+this.config.style.arrowheadClass,m.is_ie6&&n.appendChild(document.createComment("foo")),t.appendChild(n),e=r.position(n),this.plusArrowWidth=e.w,this.plusArrowHeight=e.h,n.className="minus-"+this.config.style.arrowheadClass,e=r.position(n),this.minusArrowWidth=e.w,this.minusArrowHeight=e.h,t.removeChild(n)}},hideAll:function(){return this._clearLayout(),this.inherited(arguments)},getFeatDiv:function(e){var t,i=this.getId(e);if(void 0!==this.browser.config.inferHTMLSubfeatures&&!0!==this.browser.config.inferHTMLSubfeatures||!e.parent()||"gene"!=e.parent().get("type")||(t=this.getId(e.parent())+"_"+this.getId(e)),!i&&!t)return null;for(var n=0;n<this.blocks.length;n++){var r=this.blocks[n];if(r&&r.featureNodes){var o=r.featureNodes[i];if(o)return o;if(o=r.featureNodes[t])return o}}return null},getId:function(e){return e.id()},renderFeature:function(e,i,n,r,o,a,s,l){var c=e.get("end"),h=e.get("start");"string"==typeof c&&(c=parseInt(c)),"string"==typeof h&&(h=parseInt(h));var u=h,d=c;if(this.config.style.arrowheadClass)switch(e.get("strand")){case 1:case"+":d+=this.plusArrowWidth/r;break;case-1:case"-":u-=this.minusArrowWidth/r}var f=this.glyphHeight+this.glyphHeightPad,g=this.getFeatureLabel(e),p=r>a&&this.getFeatureDescription(e);p&&p.length>this.config.style.maxDescriptionLength&&(p=p.substr(0,this.config.style.maxDescriptionLength+1).replace(/(\s+\S+|\s*)$/,"")+String.fromCharCode(8230)),this.showLabels&&r>=o&&g&&(d=Math.max(d,u+(""+g).length*this.labelWidth/r),f+=this.labelHeight+this.labelPad),this.showLabels&&p&&(d=Math.max(d,u+(""+p).length*this.labelWidth/r),f+=this.labelHeight+this.labelPad),d+=Math.max(1,this.padding/r);var b=this._getLayout(r).addRect(i,u,d,f);if(null===b)return this.markBlockHeightOverflow(n),null;var v=this.config.hooks.create(this,e);this._connectFeatDivHandlers(v),v.track=this,v.feature=e,v.layoutEnd=d,v.featureEdges={s:Math.max(v.feature.get("start"),s),e:Math.min(v.feature.get("end"),l)},v.callbackArgs=[this,v.feature,v],v._labelScale=o,v._descriptionScale=a,n.featureNodes[i]=v,"function"==typeof this.featureHook1&&this.featureHook1(e,v),u<n.startBase&&(n.leftOverlaps||(n.leftOverlaps=[]),n.leftOverlaps.push(i)),d>n.endBase&&(n.rightOverlaps||(n.rightOverlaps=[]),n.rightOverlaps.push(i)),dojo.addClass(v,"feature");var w=this.config.style.className;"{type}"==w&&(w=e.get("type"));var y=e.get("strand");switch(y){case 1:case"+":dojo.addClass(v,"plus-"+w);break;case-1:case"-":dojo.addClass(v,"minus-"+w);break;default:dojo.addClass(v,w)}var k=e.get("phase");null!=k&&dojo.addClass(v,w+"_phase"+k);var _=this.isFeatureHighlighted(e,g);_&&dojo.addClass(v,"highlighted");var x=Math.max(h,s),S=Math.min(c,l),j=n.endBase-n.startBase,C=Math.max(this.minFeatWidth,(S-x)/j*100);if(v.style.cssText="left:"+100*(x-n.startBase)/j+"%;top:"+b+"px; width:"+C+"%;"+(this.config.style.featureCss?this.config.style.featureCss:""),v._containerStart=s,v._containerEnd=l,this.config.style.arrowheadClass){var A=document.createElement("div");switch(y){case 1:case"+":A.className="plus-"+this.config.style.arrowheadClass,A.style.cssText="right: "+-this.plusArrowWidth+"px",v.appendChild(A);break;case-1:case"-":A.className="minus-"+this.config.style.arrowheadClass,A.style.cssText="left: "+-this.minusArrowWidth+"px",v.appendChild(A)}}var T=t.mixin({track:this,feature:e,callbackArgs:[this,e]});if(v.title&&(v.title=this.template(e,this._evalConf(T,v.title,"label"))),(g||p)&&this.showLabels&&r>=o){var B=dojo.create("div",{className:"feature-label"+(_?" highlighted":""),innerHTML:(g?'<div class="feature-name">'+(this.config.unsafeHTMLFeatures?g:m.escapeHTML(g))+"</div>":"")+(p?' <div class="feature-description">'+(this.config.unsafeHTMLFeatures?p:m.escapeHTML(p))+"</div>":""),style:{top:b+this.glyphHeight+2+"px",left:100*(u-n.startBase)/j+"%"}},n.domNode);this._connectFeatDivHandlers(B),v.title&&(B.title=v.title),v.label=B,B.feature=e,B.track=this,B.callbackArgs=[this,v.feature,v]}return C>this.config.style.minSubfeatureWidth&&this.handleSubFeatures(e,v,x,S,n),this.config.menuTemplate&&window.setTimeout(dojo.hitch(this,"_connectMenus",v),50+150*Math.random()),"function"==typeof this.config.hooks.modify&&this.config.hooks.modify(this,e,v),v},handleSubFeatures:function(e,t,i,n,r){var o=e.get("subfeatures");if(o)for(var a=0;a<o.length;a++){this.renderSubfeature(e,t,o[a],i,n,r);var s=o[a];"mRNA"==s.get("type")&&this.handleSubFeatures(s,t,i,n,r)}},_getHeight:function(e){if(this.config.disableHeightCache)return e.offsetHeight||0;var t=this.heightCache[e.className];return t||(t=e.offsetHeight||0,this.heightCache[e.className]=t,t)},_centerChildrenVertically:function(e){if(e.childNodes.length>0)for(var t=this._getHeight(e),i=0;i<e.childNodes.length;i++){var n=e.childNodes[i];if(n.style){var r=this._getHeight(n);dojo.style(n,{marginTop:"0",top:(t-r)/2+"px"}),n.childNodes.length>0&&this._centerChildrenVertically(n)}}},_connectFeatDivHandlers:function(e){for(var t in this.eventHandlers)this.own(o(e,t,this.eventHandlers[t]));this.eventHandlers.click&&this.eventHandlers.click.label&&e.setAttribute("title",this.eventHandlers.click.label)},_connectMenus:function(e){var i=t.hitch(this,"_refreshMenu",e);this.own(o(e,"mouseover",i)),e.label&&this.own(o(e.label,"mouseover",i))},_refreshMenu:function(e){e.contextMenu||(e.contextMenu=this._makeFeatureContextMenu(e,this.config.menuTemplate)),e.contextMenuTimeout&&window.clearTimeout(e.contextMenuTimeout),e.contextMenuTimeout=window.setTimeout(function(){e.contextMenu&&(e.contextMenu.destroyRecursive(),m.removeAttribute(e,"contextMenu")),m.removeAttribute(e,"contextMenuTimeout")},3e4)},_makeFeatureContextMenu:function(e,t){t=this._processMenuSpec(dojo.clone(t),e);var i=this._renderContextMenu(t,e);return i.startup(),i.bindDomNode(e),e.label&&i.bindDomNode(e.label),i},renderSubfeature:function(e,t,i,n,r,o){var a,s=i.get("start"),l=i.get("end"),c=r-n,h=i.get("type");if(this.config.style.subfeatureClasses){if(void 0===(a=this.config.style.subfeatureClasses[h]))a=h;else if(null===a)return null}else a=h;if("hidden"==a)return null;var u=document.createElement("div");if(u.subfeatureEdges={s:s,e:l},dojo.addClass(u,"subfeature"),a)switch(i.get("strand")){case 1:case"+":dojo.addClass(u,"plus-"+a);break;case-1:case"-":dojo.addClass(u,"minus-"+a);break;default:dojo.addClass(u,a)}var d=!1;return void 0!==this.config.truncateFeatures&&!0===this.config.truncateFeatures&&(d=!0),d&&(l<=n||s>=r)?null:(m.is_ie6&&u.appendChild(document.createComment()),u.style.cssText="left: "+(s-n)/c*100+"%;width: "+(l-s)/c*100+"%;",t.appendChild(u),o.featureNodes[i.id()]=u,u)},_getLayout:function(e){return this.haveMeasurements||(this.measureStyles(),this.haveMeasurements=!0),this.layout&&this.layout.pitchX==4/e||!e||(this.layout=new v({pitchX:4/e,pitchY:this.config.layoutPitchY||this.glyphHeight+this.glyphHeightPad,maxHeight:this.getConf("maxHeight")})),this.layout},_clearLayout:function(){delete this.layout},clear:function(){delete this.layout,this.inherited(arguments)},changed:function(){this._clearLayout(),this.inherited(arguments)},_exportFormats:function(){return[{name:"GFF3",label:"GFF3",fileExt:"gff3"},{name:"BED",label:"BED",fileExt:"bed"},{name:"SequinTable",label:"Sequin Table",fileExt:"sqn"}]},_trackMenuOptions:function(){var e=this.inherited(arguments),t=this;return e.push.apply(e,[{type:"dijit/MenuSeparator"},{label:"Show labels",type:"dijit/CheckedMenuItem",checked:!!("showLabels"in this?this.showLabels:this.config.style.showLabels),onClick:function(e){t.showLabels=this.checked,t.changed()}}]),e}})}.apply(null,n))||(e.exports=r)},377:function(e,t,i){var n,r;n=[i(334)],void 0===(r=function(e){var t={colorAlignment:function(e,i,n,r){var o=e.get("strand");if(1!=Math.abs(o)&&"+"!=o&&"-"!=o)return r.colorForBase("reference");if(r.config.colorByOrientationAndSize)return t.colorByOrientationAndSize.apply(null,arguments);if(r.config.colorByOrientation)return t.colorByOrientation.apply(null,arguments);if(r.config.colorBySize)return t.colorByInsertSizePercentile.apply(null,arguments);if(r.config.useXS)return t.colorByXS.apply(null,arguments);if(r.config.useTS)return t.colorByTS.apply(null,arguments);if(r.config.colorByMAPQ)return t.colorByMAPQ.apply(null,arguments);if(r.config.defaultColor||r.config.useReverseTemplate){if(e.get("multi_segment_template")){var a=e.get("multi_segment_first");return 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files",className:"fileDialog"}),o=this._makeLocalFilesControl(),a=this._makeRemoteURLsControl(),c=this._makeResourceListControl(),h=this._makeTrackListControl(),u=this._makeActionBar(e.openCallback,e.cancelCallback);dojo.connect(o.uploader,"onChange",function(){if(x.isElectron()){var e=[].concat(function(e){if(Array.isArray(e)){for(var t=0,i=Array(e.length);t<e.length;t++)i[t]=e[t];return i}return Array.from(e)}(o.uploader._files)).map(function(e){return x.replacePath(e.path)});c.addURLs(e)}else c.addLocalFiles(o.uploader._files)}),dojo.connect(a,"onChange",function(e){c.clearURLs(),c.addURLs(e)}),dojo.connect(c,"onChange",function(e){h.update(e)});var d=[s.create("div",{className:"intro",innerHTML:e.introMsg||"Add any combination of data files and URLs, and JBrowse will automatically suggest tracks to display their contents."}),function(e,i){var n=s.create("div",{className:"resourceControls"});return t.forEach(i,dojo.hitch(n,"appendChild")),n}(0,[o.domNode,a.domNode]),c.domNode,h.domNode,u.domNode];n.set("content",d),n.show(),i.after(n,"hide",dojo.hitch(this,function(){r.curNode&&r.curNode.blur(),setTimeout(function(){n.destroyRecursive()},500)}))},_makeLocalFilesControl:function(){var e=s.create("div",{className:"localFilesControl"});s.create("h3",{innerHTML:"Local files"},e);var t,i=s.create("div",{className:"dragArea"},e);return(t=new dojox.form.Uploader({multiple:!0})).placeAt(i),this.browserSupports.dnd&&(t.addDropTarget(this.dialog.domNode),s.create("div",{className:"dragMessage",innerHTML:"Select or drag files here."},i)),s.create("div",{className:"connector",innerHTML:"&nbsp;"},e),{domNode:e,uploader:t}},_makeRemoteURLsControl:function(){var e=s.create("div",{className:"remoteURLsControl"});s.create("h3",{innerHTML:"Remote URLs - <smaller>one per line</smaller>"},e);var t={domNode:e,onChange:function(e){}};t.input=s.create("textarea",{className:"urlInput",placeHolder:"http://paste.urls.here/example.bam",cols:25,rows:5,spellcheck:!1},e);var i="";return window.setTimeout(function e(){t.input.value.replace(/\s+/g,",")!=i&&(function(){var e=dojo.trim(t.input.value),i=e.length?e.split(/\s+/):[];t.onChange(i)}(),i=t.input.value.replace(/\s+/g,",")),window.setTimeout(e,900)},900),s.create("div",{className:"connector",innerHTML:"&nbsp;"},e),t},_makeResourceListControl:function(){return new k({dialog:this})},_makeTrackListControl:function(){var e=new _({browser:this.browser,fileDialog:this});return this.trackList=e,e}})}.apply(null,n))||(e.exports=r)},384:function(e,t,i){var n;void 0===(n=function(){var e=function(e){this.bytes=e.bytes,this.offset=e.offset||0,this.length=e.length||this.bytes.length,this._recordSeparator=(e.inputRecordSeparator||"\n").charCodeAt(0),this.returnPartialRecord=e.returnPartialRecord};return e.prototype.getOffset=function(){return this.offset},e.prototype.getline=function(){for(var e=this.bytes,t=this.offset,i=[];t<this.length;){var n,r,o=e[t];if(o<128){if(i.push(String.fromCharCode(o)),t++,o==this._recordSeparator)return this.offset=t,i.join("")}else o>191&&o<224?(n=e[t+1],i.push(String.fromCharCode((31&o)<<6|63&n)),t+=2):(n=e[t+1],r=e[t+2],i.push(String.fromCharCode((15&o)<<12|(63&n)<<6|63&r)),t+=3)}return this.offset=t,this.returnPartialRecord?i.join(""):null},{FromBytes:e}}.apply(null,[]))||(e.exports=n)},385:function(e,t,i){var n,r;n=[i(575),i(577),i(579),i(596),i(334),i(934),i(936),i(938)],void 0===(r=function(e,t,i,n,r,o,a,s){var l=e([a,s]);return e(null,{constructor:function(e,a){this.browser=e.browser;var s=t.map(e.locations||[],function(e){return{locstring:r.assembleLocString(e),location:e,label:e.label||e.objectName,description:e.description,score:e.score,tracks:t.map(t.filter(e.tracks||[],function(e){return e}),function(e){return e.key||e.name||e.label||e}).join(", ")}}),c=[];t.some(s,function(e){return e.label})&&c.unshift({label:"Name",field:"label"}),t.some(s,function(e){return e.description})&&c.unshift({label:"Description",field:"description"}),t.some(s,function(e){return e.score})&&c.unshift({label:"Score",field:"score"}),c.push({label:"Location",field:"locstring"}),s.length&&s[0].tracks&&c.push({label:"Track",field:"tracks"}),e.buttons&&c.push({label:"",className:"goButtonColumn",renderCell:function(r,o,a,s){var l=i.create("div");return t.forEach(e.buttons,function(e){var t=dojo.mixin({},e);t.onClick=function(){e.onClick(r.location,o,a,s)},new n(t).placeAt(l)}),l}}),this.grid=new l({columns:c,collection:new o({data:s})},a)}})}.apply(null,n))||(e.exports=r)},386:function(e,t,i){var n,r;n=[i(575),i(350)],void 0===(r=function(e,t){var i=0;return e(t,{namePrefix:"store-",constructor:function(e){this.refSeq=dojo.clone(e.refSeq),this.name=e.name||this.namePrefix+ 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s(n)}),this.twoBit.getIndex().then(function(){i._deferred.features.resolve({success:!0})},this._failAllDeferred.bind(this))},hasRefSeq:function(e,t,i){this.twoBit.getSequenceSize(e).then(function(e){t(void 0!==e)},i)},getRefSeqs:function(e,t){this.twoBit.getSequenceSizes().then(function(e){return Object.entries(e).map(function(e){var t=o(e,2),i=t[0],n=t[1];return{name:i,length:n,end:n,start:0}})}).then(e,t)},_getFeatures:function(e,t,i,n){var o=e.start;o<0&&(o=0);var a=e.ref;this.browser.compareReferenceNames(this.refSeq.name,a)||(a=this.refSeq.name),this.twoBit.getSequence(a,o,e.end).then(function(n){void 0!==n&&t(new r({data:{seq_id:e.ref,start:o,end:e.end,seq:n}})),i()},n)},saveStore:function(){return{urlTemplate:(this.config.file||this.config.blob).url}}})}.apply(null,n))||(e.exports=r)},388:function(e,t,i){var n,r;n=[i(575),i(576),i(579),i(585),i(593),i(590)],void 0===(r=function(e,t,i,n,r,o){return e(null,{_makeTextFilterNodes:function(e){this.textFilterDiv=i.create("div",{className:"textfilter",style:{position:"relative",overflow:"hidden"}},e),this.textFilterInput=i.create("input",{type:"text",placeholder:"filter 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n,r;n=[i(575),i(576),i(587)],void 0===(r=function(e,t,i){return e(null,{_trackDetailsContent:function(){var e=this,n=new i,r=arguments;return this.store.getGlobalStats(function(t){n.resolve(e.inherited(r,[{"Stats (current reference sequence)":t}]))},t.hitch(n,"reject")),n}})}.apply(null,n))||(e.exports=r)},390:function(e,t,i){var n,r;n=[i(575),i(577),i(619)],void 0===(r=function(e,t,i){return e(null,{constructor:function(){this._initializeConfiguredFeatureFilters()},_initializeConfiguredFeatureFilters:function(){var e=this;return i(this._getNamedFeatureFilters()).then(function(t){for(var i in t)e.config[i]?e.addFeatureFilter(t[i].func,i):e.removeFeatureFilter(i)})},_toggleFeatureFilter:function(e,t){if(void 0===t&&(t=!this.config[e]),!!t!=!!this.config[e]){this.config[e]=t;var n=this;i(this._getNamedFeatureFilters(),function(i){t?n.addFeatureFilter(i[e].func,e):n.removeFeatureFilter(e),n.changed()})}},_getNamedFeatureFilters:function(){return{}},_makeFeatureFilterTrackMenuItems:function(e,n){var r=this;return i(n||this._getNamedFeatureFilters()).then(function(i){return t.map(e,function(e){return r._makeFeatureFilterTrackMenuItem(e,i[e])})})},_makeFeatureFilterTrackMenuItem:function(e,t){var i=this;return"SEPARATOR"==e?{type:"dijit/MenuSeparator"}:{label:t.desc,title:t.title,type:"dijit/CheckedMenuItem",checked:!!i.config[e],onClick:function(t){i._toggleFeatureFilter(e,this.checked)}}}})}.apply(null,n))||(e.exports=r)},391:function(e,t,i){var n,r;n=[i(334)],void 0===(r=function(e){var t=e.fastDeclare({constructor:function(e){this._categories={},e&&dojo.mixin(this._categories,e)},total:function(){var e=0;for(var t in this._categories){var i=this._categories[t];e+=i.total?i.total():i}return e},decrement:function(e,t){return t||(t=1),e=e?e.toString():"default",this._categories[e]?this._categories[e]=Math.max(0,this._categories[e]-t):0},increment:function(e,t){return t||(t=1),e=e?e.toString():"default",this._categories[e]=(this._categories[e]||0)+t},get:function(e){return this._categories[e]||0},getNested:function(e){if("string"==typeof e&&(e=e.split("/")),!e.length)return this;var i=e[0].toString(),n=this._categories[i];return n&&n._categories||(n=this._categories[i]=new t(n?{default:n+0}:{})),e.length>1?n.getNested(e.slice(1)):n},categories:function(){return e.dojof.keys(this._categories)},toString:function(){return this.total().toPrecision(6).toString().replace(/\.?0+$/,"")},valueOf:function(){return this.total()},forEach:function(e,t){var i=this._categories;if(t)for(var n in i)e.call(t,i[n],n);else for(var n in i)e(i[n],n)}});return t}.apply(null,n))||(e.exports=r)},392:function(e,t,i){var n,r;n=[i(575)],void 0===(r=function(e){return e(null,{defaultStarts:["ATG"],defaultStops:["TAA","TAG","TGA"],defaultCodonTable:{TCA:"S",TCC:"S",TCG:"S",TCT:"S",TTC:"F",TTT:"F",TTA:"L",TTG:"L",TAC:"Y",TAT:"Y",TAA:"*",TAG:"*",TGC:"C",TGT:"C",TGA:"*",TGG:"W",CTA:"L",CTC:"L",CTG:"L",CTT:"L",CCA:"P",CCC:"P",CCG:"P",CCT:"P",CAC:"H",CAT:"H",CAA:"Q",CAG:"Q",CGA:"R",CGC:"R",CGG:"R",CGT:"R",ATA:"I",ATC:"I",ATT:"I",ATG:"M",ACA:"T",ACC:"T",ACG:"T",ACT:"T",AAC:"N",AAT:"N",AAA:"K",AAG:"K",AGC:"S",AGT:"S",AGA:"R",AGG:"R",GTA:"V",GTC:"V",GTG:"V",GTT:"V",GCA:"A",GCC:"A",GCG:"A",GCT:"A",GAC:"D",GAT:"D",GAA:"E",GAG:"E",GGA:"G",GGC:"G",GGG:"G",GGT:"G"},generateCodonTable:function(e){var t={};for(var i in e)if(e.hasOwnProperty(i)){for(var n=e[i],r=[],o=0;o<3;o++){var a=i.charAt(o);r[o]=[],r[o][0]=a.toUpperCase(),r[o][1]=a.toLowerCase()}for(o=0;o<2;o++)for(var s=r[0][o],l=0;l<2;l++)for(var c=r[1][l],h=0;h<2;h++)t[s+c+r[2][h]]=n}return t}})}.apply(null,n))||(e.exports=r)},393:function(e,t,i){var n,r;n=[i(575),i(576)],void 0===(r=function(e,t){return e(null,{getFeatureLabel:function(e){return this._getFeatureDescriptiveThing("label","name,id",e)},getFeatureDescription:function(e){return this._getFeatureDescriptiveThing("description","note,description",e)},_getFeatureDescriptiveThing:function(e,i,n){var r=this.config.style[e]||this.config[e];if(!r)return null;if("function"==typeof r)return r.call(this,n);this.descriptionFields||(this.descriptionFields={});for(var o=this.descriptionFields[e]||function(){var n=r;return n?(t.isArray(n)?n=n.join(","):"string"!=typeof n&&(console.warn("invalid `description` setting ("+n+') for "'+(this.name||this.track.name)+'" track, falling back to "note,description"'),n=i),n=n.toLowerCase().split(/\s*\,\s*/)):n=[],this.descriptionFields[e]=n,n}.call(this),a=0;a<o.length;a++){var s=n.get(o[a]);if(s)return s}return null}})}.apply(null,n))||(e.exports=r)},394:function(e,t,i){var n,r,o=function(){function e(e,t){for(var i=0;i<t.length;i++){var 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Please be more careful about discarding unused blocks."),this.initialize(i,n)):o>0&&(this.bits=this.bits.concat(new Array(o)))}if(i<this.offset){var a=this.offset-i+r;this.bits.length+a>this.sizeLimit?(console.warn("Layout width limit exceeded, discarding old layout. Please be more careful about discarding unused blocks."),this.initialize(i,n)):(this.bits=new Array(a).concat(this.bits),this.offset-=a)}}var s=i-this.offset,l=n-this.offset;l-s>2e4&&console.warn("Layout X pitch set too low, feature spans "+(l-s)+" bits in a single row.",e,t);for(var c=s;c<l;c+=1)this.bits[c]=t;i<this.min&&(this.min=i),n>this.max&&(this.max=n)}},{key:"discardRange",value:function(e,t){if(!this.allFilled&&this.bits&&!(t<=this.min||e>=this.max)){if(e<=this.min&&t>=this.max)return this.min=void 0,this.max=void 0,this.bits=void 0,void(this.offset=void 0);if(t>this.min&&e<=this.min&&(this.min=t),e<this.max&&t>=this.max&&(this.max=e),this.offset<this.min-1e4&&this.bits.length>this.max+1e4-this.offset){var i=this.min-this.offset,n=this.bits.length-1-(this.max-this.offset);this.bits=this.bits.slice(i,this.bits.length-n),this.offset+=i}else if(this.offset<this.min-1e4){var r=this.min-Math.floor(5e3)-this.offset;this.bits.splice(0,r),this.offset+=r}else 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0}},{key:"pairedFeature",value:function(){return!0}},{key:"children",value:function(){}}]),e}();function l(e){return e._get("multi_segment_template")&&!e._get("multi_segment_next_segment_unmapped")&&e._get("seq_id")===e._get("next_seq_id")&&(e._get("multi_segment_first")||e._get("multi_segment_last"))&&!(e._get("secondary_alignment")||e._get("supplementary_alignment"))}n=[i(575),i(334)],void 0===(r=function(e,t){return e(null,{constructor:function(e){this.featureCache={}},pairFeatures:function(e,i,n,r){for(var a={},c=0;c<i.length;c++){var h=void 0;if(l(i[c])&&Math.abs(i[c]._get("template_length"))<e.maxInsertSize){var u=i[c]._get("name");(h=a[u])?(i[c]._get("multi_segment_first")?h.read1=i[c]:i[c]._get("multi_segment_last")?h.read2=i[c]:console.log("unable to pair read",i[c]),h.read1&&h.read2&&(delete a[u],this.featureCache[u]=h)):(h=new s,i[c]._get("multi_segment_first")?h.read1=i[c]:i[c]._get("multi_segment_last")?h.read2=i[c]:console.log("unable to pair read",i[c]),a[u]=h)}else if(t.intersect(i[c]._get("start"),i[c]._get("end"),e.start,e.end)){var d=i[c];n(d)}}Object.entries(this.featureCache).forEach(function(i){var r=o(i,2),a=(r[0],r[1]);t.intersect(a._get("start"),a._get("end"),e.start,e.end)&&n(a)}),Object.entries(a).forEach(function(i){var r=o(i,2),a=(r[0],r[1]);a.read1?t.intersect(a.read1._get("start"),a.read1._get("end"),e.start,e.end)&&n(a.read1):a.read2&&t.intersect(a.read2._get("start"),a.read2._get("end"),e.start,e.end)&&n(a.read2)})},cleanFeatureCache:function(e){var i=this;Object.entries(this.featureCache).forEach(function(n){var r=o(n,2),a=r[0],s=r[1];t.intersect(s._get("start"),s._get("end"),e.start,e.end)||delete i.featureCache[a]})}})}.apply(null,n))||(e.exports=r)},403:function(e,t,i){var n,r,o=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var i=[],n=!0,r=!1,o=void 0;try{for(var a,s=e[Symbol.iterator]();!(n=(a=s.next()).done)&&(i.push(a.value),!t||i.length!==t);n=!0);}catch(e){r=!0,o=e}finally{try{!n&&s.return&&s.return()}finally{if(r)throw o}}return i}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},a=function(){function e(e,t){for(var i=0;i<t.length;i++){var n=t[i];n.enumerable=n.enumerable||!1,n.configurable=!0,"value"in n&&(n.writable=!0),Object.defineProperty(e,n.key,n)}}return function(t,i,n){return i&&e(t.prototype,i),n&&e(t,n),t}}(),s=function(){function e(t){!function(e,t){if(!(e instanceof t))throw new TypeError("Cannot call a class as a function")}(this,e),this.start=Math.min(t._get("start"),t._get("next_pos")),this.end=Math.max(t._get("end"),t._get("next_pos")),this.feat=t}return a(e,[{key:"id",value:function(){return this.feat.id()}},{key:"get",value:function(e){return this._get(e.toLowerCase())}},{key:"_get",value:function(e){return"start"===e?this.start:"end"===e?this.end:this.feat.get(e)}},{key:"pairedFeature",value:function(){return!0}},{key:"children",value:function(){}}]),e}();function l(e){return e._get("multi_segment_template")&&!e._get("multi_segment_next_segment_unmapped")&&(e._get("multi_segment_first")||e._get("multi_segment_last"))&&!(e._get("secondary_alignment")||e._get("supplementary_alignment"))}n=[i(575),i(334)],void 0===(r=function(e,t){return e(null,{constructor:function(e){this.featureCache={}},pairFeatures:function(e,i,n,r){for(var a=0;a<i.length;a++)if(l(i[a])){var c=i[a]._get("name");this.featureCache[c]||(this.featureCache[c]=new s(i[a]))}else if(t.intersect(i[a]._get("start"),i[a]._get("end"),e.start,e.end)){var h=i[a];n(h)}Object.entries(this.featureCache).forEach(function(i){var r=o(i,2),a=(r[0],r[1]);t.intersect(a._get("start"),a._get("end"),e.start,e.end)&&n(a)})},cleanFeatureCache:function(e){var i=this;Object.entries(this.featureCache).forEach(function(n){var r=o(n,2),a=r[0],s=r[1];t.intersect(s._get("start"),s._get("end"),e.start,e.end)||delete i.featureCache[a]})}})}.apply(null,n))||(e.exports=r)},404:function(e,t,i){var n,r;n=[i(575),i(334)],void 0===(r=function(e,t){return e(null,{constructor:function(e){this.featureCache={},this.insertStatsCacheMin=e.insertStatsCacheMin||400,this.insertStatsMaxSize=e.insertStatsMaxSize||5e4,this.insertStatsMinSize=e.insertStatsMinSize||100},cleanStatsCache:function(){this.featureCache={}},insertFeat:function(e){this.featureCache[e.id()]=Math.abs(e.get("template_length"))},getInsertSizeStats:function(){var e=this;if(Object.keys(this.featureCache).length>this.insertStatsCacheMin){var t=Object.values(this.featureCache).map(function(e){return Math.abs(e)}),i=t.reduce(function(e,t){return t>e?t:e}),n=t.reduce(function(e,t){return t<e?t:e}),r=t.filter(function(t){return t<e.insertStatsMaxSize&&t>e.insertStatsMinSize}),o=r.reduce(function(e,t){return e+t},0),a=r.map(function(e){return e*e}).reduce(function(e,t){return e+t},0),s=r.length,l=o/s,c=Math.sqrt((s*a-o*o)/(s*s));return{min:n,max:i,upper:l+3*c,lower:l-3*c}}return{upper:1/0,lower:0,min:0,max:1/0}}})}.apply(null,n))||(e.exports=r)},405:function(e,t,i){var n,r;n=[i(575),i(576),i(577),i(352),i(483)],void 0===(r=function(e,t,i,n,r){return e(null,{constructor:function(e,t,i,r,o){var a=this;if(this.bwg=e,this.autoSql=o,!(t>=0))throw"invalid cirTreeOffset!";if(!(i>0))throw"invalid cirTreeLength!";this.cirTreeOffset=t,this.cirTreeLength=i,this.isSummary=r,this.featureCache=new n({name:"feature cache",fillCallback:function(e,t){a.readWigDataById.apply(a,function(e){if(Array.isArray(e)){for(var t=0,i=Array(e.length);t<e.length;t++)i[t]=e[t];return i}return Array.from(e)}(e).concat([t,function(e){console.error(e)}]))},sizeFunction:function e(t){if(!t)return 0;var i=t.length;return t.forEach(function(t){i+=e(t.children())}),i},maxSize:5e5})},BED_COLOR_REGEXP:/^[0-9]+,[0-9]+,[0-9]+/,readWigData:function(e,t,i,n,r){var o=this.bwg.refsByName[e];o?this.readWigDataByIdWithCache(o.id,t,i,n,r):n([])},readWigDataByIdWithCache:function(e,t,i,n,r){this.featureCache.get([e,t,i],function(e,t){t?r(t):n(e)})},readWigDataById:function(e,n,o,a,s){if(this.cirHeader)new r(this,e,n,o,a,s).cirFobRecur([this.cirTreeOffset+48],1);else{var l=t.hitch(this,"readWigDataById",e,n,o,a,s);this.cirHeaderLoading?this.cirHeaderLoading.push(l):(this.cirHeaderLoading=[l],this.bwg.data.read(this.cirTreeOffset,48,t.hitch(this,function(e){this.cirHeader=e,this.cirBlockSize=this.bwg.newDataView(e,4,4).getUint32(),i.forEach(this.cirHeaderLoading,function(e){e()}),delete this.cirHeaderLoading}),s))}}})}.apply(null,n))||(e.exports=r)},406:function(e,t,i){var n,r;n=[i(575),i(577),i(576),i(384)],void 0===(r=function(e,t,i,n){var r="seq_id start end name score strand".split(" ");return e(null,{constructor:function(e){i.mixin(this,{featureCallback:e.featureCallback||function(){},endCallback:e.endCallback||function(){},commentCallback:e.commentCallback||function(){},errorCallback:e.errorCallback||function(e){console.error(e)},store:e.store,eof:!1})},parseHeader:function(e){for(var t,i={},r=new n.FromBytes({bytes:e});t=r.getline();)if("#"==t[0]){var o=(this.config.parseHeader||function(){})(t);i[o.key]=o.value}return this.header=i,i},finish:function(){this.endCallback()},addLine:function(e){var t;if(this.eof);else if(/^\s*[^#\s>]/.test(e)){e=e.replace(/\r?\n?$/g,"");var i=this.parse_feature(e);this.featureCallback(this._return_item([i]))}else if(t=/^\s*(\#+)(.*)/.exec(e)){t[1];var n=t[2];n=n.replace(/\s*/,""),this._return_item({comment:n})}else if(/^\s*$/.test(e));else{if(!/^\s*>/.test(e))throw"GFF3 parse error.  Cannot parse '"+(e=e.replace(/\r?\n?$/g,""))+"'.";this._return_all_under_construction_features(),this.eof=!0}},unescape:function(e){return null===e?null:e.replace(/%([0-9A-Fa-f]{2})/g,function(e,t){return String.fromCharCode(parseInt(t,16))})},parse_feature:function(e){var i=t.map(e.split("\t"),function(e){return"."==e?null:e});i[0]=this.unescape(i[0]);for(var n={},o=0;o<r.length;o++)i[o]&&(n[r[o]]="."==i[o]?null:i[o]);return null!==n.start&&(n.start=parseInt(n.start,10)),null!==n.end&&(n.end=parseInt(n.end,10)),null!=n.score&&(n.score=parseFloat(n.score,10)),n.strand={"+":1,"-":-1}[n.strand]||0,n},_return_item:function(e){e[0]?this.featureCallback(e):e.comment&&this.commentCallback(e,this.store)}})}.apply(null,n))||(e.exports=r)},407:function(e,t,i){var n,r;n=[i(575),i(577),i(1845),i(679),i(351),i(334)],void 0===(r=function(e,t,i,n,r,o){return e(null,{constructor:function(e){var t=/\/$/.test(e.url)?e.url:e.url+"/";this.bucketStore=new i({target:t}),this.meta={},this.browser=e.browser,this.ready=this._readMeta()},_readMeta:function(){var e=this;return this.bucketStore.get("meta.json").then(function(t){dojo.mixin(e.meta,t||{}),e.meta.hash_hex_characters=Math.ceil(e.meta.hash_bits/4)})},query:function(e,t){return this.get((e.name||"").toString()).then(function(e){return n((e||{}).exact||[])})},get:function(e){return this._getBucket(e).then(function(t){return t[e]})},_getBucket:function(e){var t=this;return this.ready.then(function(){var i=t._hash(e);return t.bucketStore.get(t._hexToDirPath(i)).then(function(e){return e},function(e){if(o.isElectron()||404==e.status)return{}})})},_hexToDirPath:function(e){for(;e.length<8;)e="0"+e;e=e.substr(8-this.meta.hash_hex_characters);for(var t=[],i=0;i<e.length;i+=3)t.push(e.substring(i,i+3));return t.join("/")+".json"+(this.meta.compress?"z":"")},_hash:function(e){return r.objectFingerprint(e).toString(16).toLowerCase().replace("-","n")},getIdentity:function(e){return e.id}})}.apply(null,n))||(e.exports=r)},408:function(e,t,i){var n,r;n=[i(334)],void 0===(r=function(e){return e.fastDeclare({constructor:function(e,t){arguments.length>=2?(this.block=e,this.offset=t):this._fromBytes(e)},_fromBytes:function(e,t){var i=1099511627776*e[t=t||0][phone]*e[t+1][phone]*e[t+2]+65536*e[t+3]+256*e[t+4]+e[t+5],n=e[t+6]<<8|e[t+7];0==i&&0==n?this.block=this.offset=null:(this.block=i,this.offset=n)},toString:function(){return this.block+":"+this.offset},compareTo:function(e){return this.block-e.block||this.offset-e.offset},cmp:function(e){return this.compareTo(e)}})}.apply(null,n))||(e.exports=r)},409:function(e,t,i){var n,r;n=[i(575),i(576),i(577),i(691),i(677),i(334),i(351)],void 0===(r=function(e,t,i,n,r,o,a){var s=o.dojof;return e("JBrowse.ConfigAdaptor.JB_json_v1",null,{constructor:function(){},load:function(e){var t=this;if(e.config.url){var i=o.resolveUrl(e.baseUrl||window.location.href,e.config.url);return r(i+(e.config.cacheBuster?"?v="+Math.random():""),{handleAs:"text",headers:{"X-Requested-With":null}}).then(function(n){return(n=t.parse_conf(n,e)||{}).sourceUrl=i,t.regularize_conf(n,e)})}if(e.config.data)return o.resolved(this.regularize_conf(e.config.data,e))},parse_conf:function(e,t){try{return n.fromJson(e)}catch(e){throw e+" when parsing "+(t.config.url||"configuration")+"."}},regularize_conf:function(e,n){if(e.tracks&&!t.isArray(e.tracks))if(e.tracks.label)e.tracks=[e.tracks];else{var r=[];for(var a in e.tracks)"label"in e.tracks[a]||(e.tracks[a].label=a),r.push(e.tracks[a]);e.tracks=r}var l=e.trackMetadata;if(l&&l.sources){if((l.sources.url||"string"==typeof l.sources)&&(l.sources=[l.sources]),!t.isArray(l.sources)){var c=[];for(var h in l.sources)"name"in l.sources||(l.sources[h].name=h),c.push(l.sources[h]);l.sources=c}i.forEach(l.sources,function(e,t){if("string"==typeof e){l.sources[t]={url:e};var i=e.match(/\.(\w+)$/);i&&(l.sources[t].type=i[1].toLowerCase())}})}if(e.sourceUrl=e.sourceUrl||n.config.url,e.baseUrl=e.baseUrl||o.resolveUrl(e.sourceUrl,"."),e.baseUrl.length&&!/\/$/.test(e.baseUrl)&&(e.baseUrl+="/"),e.sourceUrl){var u=[].concat(e.tracks||[]).concat(s.values(e.stores||{}));e.names&&u.push(e.names),i.forEach(u,function(t){t.baseUrl||(t.baseUrl=e.baseUrl||"/")},this),e.refSeqs&&"string"==typeof e.refSeqs&&(e.refSeqs=o.resolveUrl(e.sourceUrl,e.refSeqs)),e.nameUrl&&(e.nameUrl=o.resolveUrl(e.sourceUrl,e.nameUrl))}return e=this.regularizeTrackConfigs(e)},regularizeTrackConfigs:function(e){return e.stores=e.stores||{},i.forEach(e.tracks||[],function(t){if(t.config){var i=t.config;for(var n in delete t.config,i)n in t||!i.hasOwnProperty(n)||(t[n]=i[n])}if(!t.store){var r=this._regularizeClass("JBrowse/View/Track",{FeatureTrack:"JBrowse/View/Track/HTMLFeatures",ImageTrack:"JBrowse/View/Track/FixedImage","ImageTrack.Wiggle":"JBrowse/View/Track/FixedImage/Wiggle",SequenceTrack:"JBrowse/View/Track/Sequence"}[t.type]||t.type);t.type=r,this._synthesizeTrackStoreConfig(e,t),t.histograms&&(t.histograms.baseUrl||(t.histograms.baseUrl=t.baseUrl),this._synthesizeTrackStoreConfig(e,t.histograms))}},this),e},_synthesizeTrackStoreConfig:function(e,i){var n=i.urlTemplate,r=this._regularizeClass("JBrowse/Store",i.storeClass?i.storeClass:/\/FixedImage/.test(i.type)?"JBrowse/Store/TiledImage/Fixed"+(0==i.backendVersion?"_v0":""):/\.jsonz?$/i.test(n)?"JBrowse/Store/SeqFeature/NCList"+(0==i.backendVersion?"_v0":""):/\.bam$/i.test(n)?"JBrowse/Store/SeqFeature/BAM":/\.cram$/i.test(n)?"JBrowse/Store/SeqFeature/CRAM":/\.gff3?$/i.test(n)?"JBrowse/Store/SeqFeature/GFF3":/\.bed$/i.test(n)?"JBrowse/Store/SeqFeature/BED":/\.vcf.gz$/i.test(n)?"JBrowse/Store/SeqFeature/VCFTabix":/\.gff3?.gz$/i.test(n)?"JBrowse/Store/SeqFeature/GFF3Tabix":/\.bed.gz$/i.test(n)?"JBrowse/Store/SeqFeature/BEDTabix":/\.(bw|bigwig)$/i.test(n)?"JBrowse/Store/SeqFeature/BigWig":/\.(bb|bigbed)$/i.test(n)?"JBrowse/Store/SeqFeature/BigBed":/\.(fa|fasta)$/i.test(n)?"JBrowse/Store/SeqFeature/IndexedFasta":/\.(fa|fasta)\.gz$/i.test(n)?"JBrowse/Store/SeqFeature/BgzipIndexedFasta":/\.2bit$/i.test(n)?"JBrowse/Store/SeqFeature/TwoBit":/\/Sequence$/.test(i.type)?"JBrowse/Store/Sequence/StaticChunked":null);if(r){var o=t.mixin({},i);t.mixin(o,{type:r}),"JBrowse/Store/Sequence/StaticChunked"!=r&&"JBrowse/Store/Sequence/IndexedFasta"!=r&&"JBrowse/Store/SeqFeature/IndexedFasta"!=r&&"JBrowse/Store/SeqFeature/BgzipIndexedFasta"!=r&&"JBrowse/Store/SeqFeature/TwoBit"!=r&&"JBrowse/Store/Sequence/TwoBit"!=r&&!i.useAsRefSeqStore||e.stores.refseqs?o.name="store"+a.objectFingerprint(o):o.name="refseqs",e.stores[o.name]=o,i.store=o.name}else console.warn("Unable to determine an appropriate data store to use with track '"+i.label+"', please explicitly specify a storeClass in the configuration.")},_regularizeClass:function(e,t){return t?(/\//.test(t)||(t=e+"/"+t),t=t.replace(/^\//)):null}})}.apply(null,n))||(e.exports=r)},410:function(e,t,i){var n,r;n=[i(575),i(576),i(579),i(363),i(411)],void 0===(r=function(e,t,i,n,r){return e([n,r],{renderFeature:function(e,t){"collapsed"!=this.track.displayMode&&e.clearRect(Math.floor(t.l),t.t,Math.ceil(t.w),t.h),this.renderSegments(e,t),this.renderIntrons(e,t),this.renderLabel(e,t),this.renderDescription(e,t),this.renderArrowhead(e,t)},renderIntrons:function(e,t){var i=this._getSubparts(t.f);if(!(i.length<=1)){i.sort(function(e,t){return e.get("start")-t.get("start")});for(var n=t.viewInfo,r=0;r<i.length-1;++r)if(i[r+1].get("start")-i[r].get("end")>2){var o=n.block.bpToX(i[r].get("start")),a=n.block.bpToX(i[r].get("end"))-o,s=n.block.bpToX(i[r+1].get("start")),l=(n.block.bpToX(i[r+1].get("end")),t.t),c=t.rect.h,h=this._getFeatureHeight(n,i[r]);if(!h)return;h!=c&&(l+=Math.round((c-h)/2));var u=h/2,d=o+a,f=s-d,g=f/2;e.beginPath(),e.moveTo(d,l+u),e.lineTo(d+g,l+1),e.lineTo(d+f,l+u),e.lineWidth=1,e.strokeStyle="#202020",e.lineCap="square",e.stroke()}}}})}.apply(null,n))||(e.exports=r)},411:function(e,t,i){var n,r;function o(e,t){var i=Math.max(0,parseInt(e,10));return 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0!==t.config.trackLabels&&"no-block"===t.config.trackLabels&&(this.config.trackPadding=35,this.topSpace=3*this.posHeight),this.maxPxPerBp=this.config.maxPxPerBp,this.ref=r,this.pxPerBp=o,this.stripeWidth=n,this.scrollContainer=dojo.create("div",{id:"container",style:{position:"absolute",left:"0px",top:"0px"}},i),this._renderVerticalScrollBar(),this.zoomContainer=document.createElement("div"),this.zoomContainer.id="zoomContainer",this.zoomContainer.style.cssText="position: absolute; left: 0px; top: 0px; height: 100%;",this.scrollContainer.appendChild(this.zoomContainer),this.outerTrackContainer=document.createElement("div"),this.outerTrackContainer.className="trackContainer outerTrackContainer",this.outerTrackContainer.style.cssText="height: 100%;",this.zoomContainer.appendChild(this.outerTrackContainer),this.trackContainer=document.createElement("div"),this.trackContainer.className="trackContainer innerTrackContainer draggable",this.trackContainer.style.cssText="height: 100%;",this.outerTrackContainer.appendChild(this.trackContainer),this.regularStripe=n,this.overview=this.browser.overviewDiv,this.overviewBox=dojo.marginBox(this.overview),this.tracks=[],this.uiTracks=[],this.trackIndices={},this.sizeInit(),this.offset=0,this.maxLeft=this.bpToPx(this.ref.end+1)-this.getWidth(),this.minLeft=this.bpToPx(this.ref.start),this.drawMargin=.2,this.slideTimeMultiple=.8,this.trackHeights=[],this.trackTops=[],this.waitElems=dojo.filter([dojo.byId("moveLeft"),dojo.byId("moveRight"),dojo.byId("zoomIn"),dojo.byId("zoomOut"),dojo.byId("bigZoomIn"),dojo.byId("bigZoomOut"),document.body,i],function(e){return e}),this.prevCursors=[],this.locationThumb=document.createElement("div"),this.locationThumb.className="locationThumb",this.overview.appendChild(this.locationThumb),this.locationThumbMover=new v(this.locationThumb,{area:"content",within:!0}),this.x=this.elem.scrollLeft,this.y=0;var a=document.createElement("div");a.className="track static_track rubberBandAvailable",a.style.height=this.posHeight+"px",a.id="static_track",this.scaleTrackDiv=a,this.staticTrack=new u({label:"static_track",labelClass:"pos-label",posHeight:this.posHeight,browser:this.browser,refSeq:this.ref}),this.staticTrack.setViewInfo(this,function(e){},this.stripeCount,this.scaleTrackDiv,this.stripePercent,this.stripeWidth,this.pxPerBp,this.config.trackPadding),this.zoomContainer.appendChild(this.scaleTrackDiv),this.waitElems.push(this.scaleTrackDiv);var l=document.createElement("div");l.className="track",l.style.cssText="top: 0px; height: 100%;",l.id="gridtrack";var c=new d({browser:this.browser,refSeq:this.ref});c.setViewInfo(this,function(e){},this.stripeCount,l,this.stripePercent,this.stripeWidth,this.pxPerBp,this.config.trackPadding),this.trackContainer.appendChild(l),this.uiTracks=[this.staticTrack,c],this.trackDndWidget=new s(this.trackContainer,{accept:["track"],withHandles:!0,creator:dojo.hitch(this,function(e,t){return{data:e,type:["track"],node:"avatar"==t?dojo.create("div",{innerHTML:e.key||e.label,className:"track-label dragging"}):this.renderTrack(e)}})}),this.browser.subscribe("/dnd/drop",dojo.hitch(this,function(e,t,i,n){if(this.updateTrackList(),n.node===this.trackContainer){var r=dojo.filter(dojo.map(t,function(e){return e.track&&e.track.config}),function(e){return e});this.browser.publish("/jbrowse/v1/v/tracks/show",r)}})),this.browser.subscribe("/jbrowse/v1/c/tracks/show",dojo.hitch(this,"showTracks")),this.browser.subscribe("/jbrowse/v1/c/tracks/hide",dojo.hitch(this,"hideTracks")),this.browser.subscribe("/jbrowse/v1/c/tracks/replace",dojo.hitch(this,"replaceTracks")),this.browser.subscribe("/jbrowse/v1/c/tracks/delete",dojo.hitch(this,"hideTracks")),this.browser.subscribe("/jbrowse/v1/c/tracks/pin",dojo.hitch(this,"pinTracks")),this.browser.subscribe("/jbrowse/v1/c/tracks/unpin",dojo.hitch(this,"unpinTracks")),dojo.forEach(this.uiTracks,function(e){e.showRange(0,this.stripeCount-1,Math.round(this.pxToBp(this.offset)),Math.round(this.stripeWidth/this.pxPerBp),this.pxPerBp)},this),this.addOverviewTrack(new u({label:"overview_loc_track",labelClass:"overview-pos",posHeight:this.overviewPosHeight,browser:this.browser,refSeq:this.ref})),this.showFine(),this.showCoarse(),this.behaviorManager=new f({context:this,behaviors:this._behaviors()}),this.behaviorManager.initialize()},_defaultConfig:function(){return{maxPxPerBp:20,trackPadding:20}},visibleRegion:function(){return{ref:this.ref.name,start:this.minVisible(),end:this.maxVisible()}},visibleRegionLocString:function(){return n.assembleLocString(this.visibleRegion())},_renderVerticalScrollBar:function(){var e=dojo.create("div",{className:"vertical_scrollbar",style:{position:"absolute",right:"0px",bottom:"0px",height:"100%",width:"10px",zIndex:1e3}},this.browser.container),t=dojo.create("div",{className:"vertical_position_marker",style:{position:"absolute",height:"100%"}},e);this.verticalScrollBar={container:e,positionMarker:t,width:e.offsetWidth}},_updateVerticalScrollBar:function(e){if("number"==typeof e.height){var t=this.staticTrack?-this.staticTrack.div.offsetHeight:0,i=e.height+t;this.verticalScrollBar.container.style.height=i-(this.pinUnderlay?this.pinUnderlay.offsetHeight+t:0)+"px";var n=e.height/(this.containerHeight||1)*100;this.verticalScrollBar.positionMarker.style.height=n>.5?n+"%":"1px",e.height/(this.containerHeight||1)>.98?(this.verticalScrollBar.container.style.display="none",this.verticalScrollBar.visible=!1):(this.verticalScrollBar.container.style.display="block",this.verticalScrollBar.visible=!0)}"number"!=typeof e.y&&"number"!=typeof e.height||(this.verticalScrollBar.positionMarker.style.top=((e.y||this.getY()||0)/(this.containerHeight||1)*100||0)+"%")},verticalScrollBarVisibleWidth:function(){return this.verticalScrollBar.visible&&this.verticalScrollBar.width||0},visibleTracks:function(){return this.tracks},visibleTrackNames:function(){return dojo.map(this.visibleTracks(),function(e){return e.name})},keySlideX:function(e){this.setX(this.getX()+e);var t=this;this._keySlideTimeout||(this._keySlideTimeout=window.setTimeout(function(){t.afterSlide(),delete t._keySlideTimeout},300))},_behaviors:function(){return{always:{apply_on_init:!0,apply:function(){var e=[];e.push(dojo.connect(this.overview,"mousedown",dojo.hitch(this,"startRubberZoom",dojo.hitch(this,"overview_absXtoBp"),this.overview,this.overview)));var t="onwheel"in document.createElement("div")?"wheel":void 0!==document.onmousewheel?"mousewheel":"DOMMouseScroll";return e.push(dojo.connect(this.scrollContainer,t,this,"wheelScroll",!1),dojo.connect(this.verticalScrollBar.container,"onclick",this,"scrollBarClickScroll",!1),dojo.connect(this.scaleTrackDiv,"mousedown",dojo.hitch(this,"startRubberZoom",dojo.hitch(this,"absXtoBp"),this.scrollContainer,this.scaleTrackDiv)),dojo.connect(this.outerTrackContainer,"dblclick",this,"doubleClickZoom"),dojo.connect(this.locationThumbMover,"onMoveStop",this,"thumbMoved"),dojo.connect(this.overview,"onclick",this,"overviewClicked"),dojo.connect(this.scaleTrackDiv,"onclick",this,"scaleClicked"),dojo.connect(this.scaleTrackDiv,"mouseover",this,"scaleMouseOver"),dojo.connect(this.scaleTrackDiv,"mouseout",this,"scaleMouseOut"),dojo.connect(this.scaleTrackDiv,"mousemove",this,"scaleMouseMove"),dojo.connect(document.body,"onkeyup",this,function(e){e.keyCode==dojo.keys.SHIFT&&this.behaviorManager.swapBehaviors("shiftMouse","normalMouse")}),dojo.connect(document.body,"onkeydown",this,function(e){e.keyCode==dojo.keys.SHIFT&&this.behaviorManager.swapBehaviors("normalMouse","shiftMouse")}),dojo.connect(document.body,"onkeypress",this,function(e){if(!l.curNode)if(e.keyCode==dojo.keys.LEFT_ARROW||e.keyCode==dojo.keys.RIGHT_ARROW){var t=e.keyCode==dojo.keys.LEFT_ARROW?-40:40;e.shiftKey&&(t*=5),this.keySlideX(t)}else e.keyCode!=dojo.keys.DOWN_ARROW&&e.keyCode!=dojo.keys.UP_ARROW||(e.shiftKey?this[e.keyCode==dojo.keys.UP_ARROW?"zoomIn":"zoomOut"](e,.5,e.altKey?2:1):(t=e.keyCode==dojo.keys.UP_ARROW?-40:40,this.setY(this.getY()+t)))}),dojo.connect(this.scrollContainer,"onclick",this,function(e){l.curNode&&l.curNode.blur()})),e}},normalMouse:{apply_on_init:!0,apply:function(){return[dojo.connect(this.outerTrackContainer,"mousedown",this,"startMouseDragScroll"),dojo.connect(this.verticalScrollBar.container,"mousedown",this,"startVerticalMouseDragScroll")]}},highlightingMouse:{apply:function(){return dojo.removeClass(this.trackContainer,"draggable"),dojo.addClass(this.trackContainer,"highlightingAvailable"),[dojo.connect(this.outerTrackContainer,"mousedown",dojo.hitch(this,"startMouseHighlight",dojo.hitch(this,"absXtoBp"),this.scrollContainer,this.scaleTrackDiv)),dojo.connect(this.outerTrackContainer,"mouseover",this,"maybeDrawVerticalPositionLine"),dojo.connect(this.outerTrackContainer,"mousemove",this,"maybeDrawVerticalPositionLine")]},remove:function(e,t){dojo.forEach(t,dojo.disconnect,dojo),dojo.removeClass(this.trackContainer,"highlightingAvailable"),dojo.addClass(this.trackContainer,"draggable")}},shiftMouse:{apply:function(){if(!dojo.hasClass(this.trackContainer,"highlightingAvailable"))return dojo.removeClass(this.trackContainer,"draggable"),dojo.addClass(this.trackContainer,"rubberBandAvailable"),[dojo.connect(this.outerTrackContainer,"mousedown",dojo.hitch(this,"startRubberZoom",dojo.hitch(this,"absXtoBp"),this.scrollContainer,this.scaleTrackDiv)),dojo.connect(this.outerTrackContainer,"onclick",this,"scaleClicked"),dojo.connect(this.outerTrackContainer,"mouseover",this,"maybeDrawVerticalPositionLine"),dojo.connect(this.outerTrackContainer,"mousemove",this,"maybeDrawVerticalPositionLine")]},remove:function(e,t){this.clearBasePairLabels(),this.clearVerticalPositionLine(),dojo.forEach(t,dojo.disconnect,dojo),dojo.removeClass(this.trackContainer,"rubberBandAvailable"),dojo.addClass(this.trackContainer,"draggable")}},mouseDragScrolling:{apply:function(){return[dojo.connect(document.body,"mouseup",this,"dragEnd"),dojo.connect(document.body,"mousemove",this,"dragMove"),dojo.connect(document.body,"mouseout",this,"checkDragOut")]}},verticalMouseDragScrolling:{apply:function(){return[dojo.connect(document.body,"mouseup",this,"dragEnd"),dojo.connect(document.body,"mousemove",this,"verticalDragMove"),dojo.connect(document.body,"mouseout",this,"checkDragOut")]}},mouseRubberBanding:{apply:function(){return[dojo.connect(document.body,"mouseup",this,"rubberExecute"),dojo.connect(document.body,"mousemove",this,"rubberMove"),dojo.connect(document.body,"mouseout",this,"rubberCancel"),dojo.connect(window,"onkeydown",this,function(e){e.keyCode!==dojo.keys.SHIFT&&this.rubberCancel(e)})]}}}},calculatePositionLabelHeight:function(e){var t=document.createElement("div");t.className="pos-label",t.style.visibility="hidden",t.appendChild(document.createTextNode("42")),e.appendChild(t);var i=t.clientHeight;return e.removeChild(t),i},scrollBarClickScroll:function(e){e||(e=window.event);var t=parseInt(this.verticalScrollBar.container.style.height,10),i=parseInt(this.verticalScrollBar.positionMarker.style.height,10),n=this.trackContainer.clientHeight,r=this.getY()*(n/t);r>e.clientY?this.setY(this.getY()-300):r+i<e.clientY&&this.setY(this.getY()+300),this.wheelScrollTimeout&&window.clearTimeout(this.wheelScrollTimeout),this.wheelScrollTimeout=window.setTimeout(dojo.hitch(this,function(){this.showVisibleBlocks(!0),this.wheelScrollTimeout=null},100)),dojo.stopEvent(e)},wheelScroll:function(e){e||(e=window.event);var t={x:0,y:0};if("wheelDeltaX"in e)t.x=e.wheelDeltaX/2,t.y=e.wheelDeltaY/2;else if("deltaX"in e){var i=-1!==navigator.userAgent.indexOf("OS X 10.9")?-5:-40;t.x=Math.abs(e.deltaY)>Math.abs(2*e.deltaX)?0:e.deltaX*i,t.y=-10*e.deltaY}else e.wheelDelta?(t.y=e.wheelDelta/2,window.opera&&(t.y=-t.y)):e.detail&&(t.y=100*-e.detail);t.x=Math.round(2*t.x),t.y=Math.round(t.y);var n=!1;if(t.x&&this.keySlideX(-t.x),t.y){var r=this.getY();this.setY(r-t.y)!==r&&(n=!0)}this.wheelScrollTimeout&&window.clearTimeout(this.wheelScrollTimeout),this.wheelScrollTimeout=window.setTimeout(dojo.hitch(this,function(){this.showVisibleBlocks(!0),this.wheelScrollTimeout=null},100)),(n||this.browser.config.alwaysStopScrollBubble)&&dojo.stopEvent(e)},getX:function(){return this.x||0},getY:function(){return this.y||0},getHeight:function(){return this.elemBox.h},getWidth:function(){return this.elemBox.w},clampX:function(e){return Math.round(Math.max(Math.min(this.maxLeft-this.offset,e||0),this.minLeft-this.offset))},clampY:function(e){return Math.round(Math.min(Math.max(0,e||0),this.containerHeight-this.getHeight()))},rawSetX:function(e){this.elem.scrollLeft=e,this.x=e},setX:function(e){return e=this.clampX(e),this.rawSetX(e),this.updateStaticElements({x:e}),this.showFine(),e},rawSetY:function(e){this.y=e,this.layoutTracks()},setY:function(e){return e=this.clampY(e),this.rawSetY(e),this.updateStaticElements({y:e}),e},rawSetPosition:function(e){return this.rawSetX(e.x),this.rawSetY(e.y),e},setPosition:function(e){var t=this.clampX(e.x),i=this.clampY(e.y);this.updateStaticElements({x:t,y:i}),this.rawSetX(t),this.rawSetY(i),this.showFine()},getPosition:function(){return{x:this.x,y:this.y}},zoomCallback:function(){this.zoomUpdate()},afterSlide:function(){this.showCoarse(),this.scrollUpdate(),this.showVisibleBlocks(!0)},suppressDoubleClick:function(e){this._noDoubleClick&&window.clearTimeout(this._noDoubleClick);var t=this;this._noDoubleClick=window.setTimeout(function(){delete t._noDoubleClick},e||100)},doubleClickZoom:function(e){if(!this._noDoubleClick&&!(this.dragging||"animation"in this)){this.scaleClickedTimeout&&window.clearTimeout(this.scaleClickedTimeout);var t=(e.pageX-dojo.position(this.elem,!0).x)/this.getWidth();e.shiftKey?this.zoomOut(e,t,2):this.zoomIn(e,t,2),dojo.stopEvent(e)}},_beforeMouseDrag:function(e){if(this.animation){if(this.animation instanceof g)return dojo.stopEvent(e),0;this.animation.stop()}return n.isRightButton(e)?0:(dojo.stopEvent(e),1)},startMouseDragScroll:function(e){this._beforeMouseDrag(e)&&(this.behaviorManager.applyBehaviors("mouseDragScrolling"),this.dragStartPos={x:e.clientX,y:e.clientY},this.winStartPos=this.getPosition())},startVerticalMouseDragScroll:function(e){this._beforeMouseDrag(e)&&(this.behaviorManager.applyBehaviors("verticalMouseDragScrolling"),this.dragStartPos={x:e.clientX,y:e.clientY},this.winStartPos=this.getPosition())},startMouseHighlight:function(e,t,i,n){this._beforeMouseDrag(n)&&(this.behaviorManager.applyBehaviors("mouseRubberBanding"),this.rubberbanding={absFunc:e,container:t,scaleDiv:i,message:"Highlight region",start:{x:n.clientX,y:n.clientY},execute:function(e,t){this.browser.setHighlightAndRedraw({ref:this.ref.name,start:e,end:t})}},this.winStartPos=this.getPosition())},startRubberZoom:function(e,t,i,n){this._beforeMouseDrag(n)&&(this.behaviorManager.applyBehaviors("mouseRubberBanding"),this.rubberbanding={absFunc:e,container:t,scaleDiv:i,message:"Zoom to region",start:{x:n.clientX,y:n.clientY},execute:function(e,t){this.setLocation(this.ref,e,t)}},this.winStartPos=this.getPosition(),this.clearVerticalPositionLine(),this.clearBasePairLabels())},_rubberStop:function(e){this.behaviorManager.removeBehaviors("mouseRubberBanding"),this.hideRubberHighlight(),this.clearBasePairLabels(),e&&dojo.stopEvent(e),delete this.rubberbanding},rubberCancel:function(e){var t=document.body.parentNode,i=document.body;e&&(e.relatedTarget||e.toElement)&&t!==(e.relatedTarget||e.toElement)&&i!==(e.relatedTarget||e.toElement)||this._rubberStop(e)},rubberMove:function(e){this.setRubberHighlight(this.rubberbanding.start,{x:e.clientX,y:e.clientY})},rubberExecute:function(e){var t=this.rubberbanding.start,i={x:e.clientX,y:e.clientY},n=Math.floor(this.rubberbanding.absFunc(Math.min(t.x,i.x))),r=Math.ceil(this.rubberbanding.absFunc(Math.max(t.x,i.x))),o=this.rubberbanding.execute;this._rubberStop(e),Math.abs(t.x-i.x)<3||o.call(this,n,r)},setRubberHighlight:function(e,t){var i=this.rubberbanding.container,n=dojo.position(i,!0),r=this.rubberHighlight||function(){var e=this.rubberHighlight=document.createElement("div");e.className="rubber-highlight",e.style.position="absolute",e.style.zIndex=20;var t=document.createElement("div");return t.appendChild(document.createTextNode(this.rubberbanding.message)),e.appendChild(t),t.style.position="relative",t.style.top=50-n.y+"px",i.appendChild(e),e}.call(this);r.style.visibility="visible",r.style.left=Math.min(e.x,t.x)-n.x+"px",r.style.width=Math.abs(t.x-e.x)+"px",this.drawBasePairLabel({name:"rubberLeft",xToBp:this.rubberbanding.absFunc,scaleDiv:this.rubberbanding.scaleDiv,offset:0,x:Math.min(e.x,t.x),parent:i,className:"rubber"}),this.drawBasePairLabel({name:"rubberRight",xToBp:this.rubberbanding.absFunc,scaleDiv:this.rubberbanding.scaleDiv,offset:0,x:Math.max(e.x,t.x)+1,parent:i,className:"rubber"}),this.clearVerticalPositionLine()},dragEnd:function(e){this.behaviorManager.removeBehaviors("mouseDragScrolling","verticalMouseDragScrolling"),dojo.stopEvent(e),this.showCoarse(),this.scrollUpdate(),this.showVisibleBlocks(!0),window.setTimeout(dojo.hitch(this,function(){this.dragging=!1}),100)},checkDragOut:function(e){var t=document.body.parentNode,i=document.body;(e.relatedTarget||e.toElement)&&t!==(e.relatedTarget||e.toElement)&&i!==(e.relatedTarget||e.toElement)||this.dragEnd(e)},dragMove:function(e){this.dragging=!0,this.setPosition({x:this.winStartPos.x-(e.clientX-this.dragStartPos.x),y:this.winStartPos.y-(e.clientY-this.dragStartPos.y)}),dojo.stopEvent(e)},verticalDragMove:function(e){this.dragging=!0;var t=parseInt(this.verticalScrollBar.container.style.height,10),i=this.trackContainer.clientHeight;this.setPosition({x:this.winStartPos.x,y:this.winStartPos.y+(e.clientY-this.dragStartPos.y)*(i/t)}),dojo.stopEvent(e)},hideRubberHighlight:function(e,t){this.rubberHighlight&&(this.rubberHighlight.parentNode.removeChild(this.rubberHighlight),delete this.rubberHighlight)},slide:function(e){this.animation&&this.animation.stop(),this.trimVertical(),new p(this,this.afterSlide,Math.abs(e)*this.getWidth()*this.slideTimeMultiple+200,e*this.getWidth())},setLocation:function(e,i,r){function o(e){delete a.desiredTracks[e.name],e.div&&e.div.parentNode&&e.div.parentNode.removeChild(e.div)}if(void 0===i&&(i=this.minVisible()),void 0===r&&(r=this.maxVisible()),"string"==typeof e&&(e=this.browser.getRefSeq(e)),e||(e=this.ref),(i<e.start||i>e.end)&&(i=e.start),(r<e.start||r>e.end)&&(r=e.end),this.ref!==e){var a=this;this.ref=e,this._unsetPosBeforeZoom(),t.forEach(this.tracks,o),this.tracks=[],this.trackIndices={},this.trackHeights=[],this.trackTops=[],t.forEach(this.uiTracks,function(e){e.refSeq=a.ref,e.clear()}),this.overviewTrackIterate(o),this.addOverviewTrack(new u({label:"overview_loc_track",labelClass:"overview-pos",posHeight:this.overviewPosHeight,browser:this.browser,refSeq:this.ref})),this.sizeInit(),this.setY(0),this.behaviorManager.initialize()}this.pxPerBp=Math.min(this.getWidth()/(r-i),this.maxPxPerBp),this.curZoom=n.findNearest(this.zoomLevels,this.pxPerBp),Math.abs(this.pxPerBp-this.zoomLevels[this.zoomLevels.length-1])<.2&&(this.pxPerBp=this.zoomLevels[this.zoomLevels.length-1]),this.stripeWidth=this.stripeWidthForZoom(this.curZoom)/this.zoomLevels[this.curZoom]*this.pxPerBp,this.instantZoomUpdate(),this.centerAtBase((i+r)/2,!0)},stripeWidthForZoom:function(e){return this.zoomLevels.length-1==e?this.regularStripe/10*this.maxPxPerBp:0==e?this.minZoomStripe:this.regularStripe},instantZoomUpdate:function(){this.scrollContainer.style.width=this.stripeCount*this.stripeWidth+"px",this.zoomContainer.style.width=this.stripeCount*this.stripeWidth+"px",this.maxOffset=this.bpToPx(this.ref.end)-this.stripeCount*this.stripeWidth,this.maxLeft=this.bpToPx(this.ref.end+1)-this.getWidth(),this.minLeft=this.bpToPx(this.ref.start)},centerAtBase:function(e,t){if(e=Math.min(Math.max(e,this.ref.start),this.ref.end),t){var i=this.bpToPx(e),n=this.stripeCount*this.stripeWidth,r=Math.floor((i-n/2)/this.stripeWidth);this.offset=r*this.stripeWidth,this.setX(i-this.offset-this.getWidth()/2),this.trackIterate(function(e){e.clear()}),this.showVisibleBlocks(!0),this.showCoarse()}else{var o=this.pxToBp(this.x+this.offset),a=this.getWidth()/this.pxPerBp/2,s=o+a;if(e>=o-a&&e<=o+a+a+a){this.animation&&this.animation.stop();var l=(s-e)*this.pxPerBp;this.trimVertical(),new p(this,this.afterSlide,Math.abs(l)*this.slideTimeMultiple+200,l)}else this.centerAtBase(e,!0)}},minVisible:function(){var e=this.pxToBp(this.x+this.offset);return e<this.pxToBp(1)?0:Math.round(e)},maxVisible:function(){var e=this.pxToBp(this.x+this.offset+this.getWidth()),t=Math.round(this.pxToBp(this.verticalScrollBarVisibleWidth()));return e>this.ref.end-this.pxToBp(1)?this.ref.end-t:Math.round(e)-t},showFine:function(){this.onFineMove(this.minVisible(),this.maxVisible())},showCoarse:function(){this.onCoarseMove(this.minVisible(),this.maxVisible())},onFineMove:function(e,t){this.updateLocationThumb()},onCoarseMove:function(e,t){this.updateLocationThumb()},onResize:function(){this.sizeInit(),this.showVisibleBlocks(),this.showFine(),this.showCoarse()},overviewClicked:function(e){this.centerAtBase(this.overview_absXtoBp(e.clientX))},scaleMouseOver:function(e){this.rubberbanding||this.drawVerticalPositionLine(this.scaleTrackDiv,e)},scaleMouseMove:function(e){this.rubberbanding||this.drawVerticalPositionLine(this.scaleTrackDiv,e)},scaleMouseOut:function(e){this.clearVerticalPositionLine(),this.clearBasePairLabels()},maybeDrawVerticalPositionLine:function(e){this.rubberbanding||this.drawVerticalPositionLine(this.scaleTrackDiv,e)},drawVerticalPositionLine:function(e,t){var i=t.pageX+2;this.verticalPositionLine||(this.verticalPositionLine=dojo.create("div",{className:"trackVerticalPositionIndicatorMain"},this.staticTrack.div));var n=this.verticalPositionLine;n.style.display="block",n.style.left=i+"px";var r=dojo.position(this.scaleTrackDiv);n.style.top=r.y+"px",this.drawBasePairLabel({name:"single",offset:0,x:i,parent:e,scaleDiv:e})},drawBasePairLabel:function(e){var t=e.name||0,i=e.offset||0,r=e.x;if(this.basePairLabels=this.basePairLabels||{},!this.basePairLabels[t]){var a=dojo.position(e.scaleDiv||this.scaleTrackDiv);this.basePairLabels[t]=dojo.create("div",{className:"basePairLabel"+(e.className?" "+e.className:""),style:{top:a.y+a.h-3+"px"}},this.browser.container)}var s=this.basePairLabels[t];"object"==(void 0===r?"undefined":o(r))&&(r=r.clientX),s.style.display="block";var l=e.xToBp||dojo.hitch(this,"absXtoBp");s.innerHTML=n.addCommas(Math.floor(l(r))+1),window.innerWidth-r>8+s.offsetWidth?s.style.left=r+i+"px":s.style.left=r+1-i-s.offsetWidth+"px"},clearVerticalPositionLine:function(){this.verticalPositionLine&&(this.verticalPositionLine.style.display="none")},clearBasePairLabels:function(){for(var e in this.basePairLabels){var t=this.basePairLabels[e];t.parentNode&&t.parentNode.removeChild(t)}this.basePairLabels={}},overview_absXtoBp:function(e){var t=dojo.position(this.overview);return(e-t.x)/t.w*(this.ref.end-this.ref.start)+this.ref.start},scaleClicked:function(e){var t=this.absXtoBp(e.clientX);this.scaleClickedTimeout=window.setTimeout(dojo.hitch(this,function(){this.centerAtBase(t)},100))},thumbMoved:function(e){var t=parseInt(this.locationThumb.style.left)+parseInt(this.locationThumb.style.width)/2;this.centerAtBase(t/this.overviewBox.w*(this.ref.end-this.ref.start)+this.ref.start)},updateLocationThumb:function(){var e=this.minVisible(),t=this.maxVisible(),i=this.ref.end-this.ref.start,n=Math.round((e-this.ref.start)/i*this.overviewBox.w+this.overviewBox.l),r=Math.round((t-this.ref.start)/i*this.overviewBox.w+this.overviewBox.l);this.locationThumb.style.cssText="height: "+(this.overviewBox.h-4)+"px; left: "+n+"px; width: "+(r-n)+"px;z-index: 20"},checkY:function(e){return Math.min(e<0?0:e,this.containerHeight-this.getHeight())},updateStaticElements:function(e){this.trackIterate(function(t){t.updateStaticElements(e)},this),this._updateVerticalScrollBar(e)},showWait:function(){for(var e=[],t=0;t<this.waitElems.length;t++)e[t]=this.waitElems[t].style.cursor,this.waitElems[t].style.cursor="wait";this.prevCursors.push(e)},showDone:function(){for(var e=this.prevCursors.pop(),t=0;t<this.waitElems.length;t++)this.waitElems[t].style.cursor=e[t]},pxToBp:function(e){return e/this.pxPerBp},absXtoBp:function(e){return this.pxToBp(this.getPosition().x+this.offset-dojo.position(this.elem,!0).x+e)-1},bpToPx:function(e){return e*this.pxPerBp},sizeInit:function(){this.overviewBox=dojo.marginBox(this.overview),this.elemBox={h:this.elem.offsetHeight,w:this.elem.offsetWidth};var e=[2e-6,5e-6,1e-5,2e-5,5e-5,1e-4,2e-4,5e-4,.001,.002,.005,.01,.02,.05,.1,.2,.5,1,2,5,10,20];this.zoomLevels=[];for(var t=0;t<e.length;t++){var i=e[t];if(!(i<this.maxPxPerBp))break;this.zoomLevels.push(i)}for(this.zoomLevels.push(this.maxPxPerBp);(this.ref.end-this.ref.start)*this.zoomLevels[0]<this.getWidth();)this.zoomLevels.shift();for(this.zoomLevels.unshift(this.getWidth()/(this.ref.end-this.ref.start)),this.minZoomStripe=this.regularStripe*(this.zoomLevels[0]/this.zoomLevels[1]),this.curZoom=0;this.pxPerBp>this.zoomLevels[this.curZoom];)this.curZoom++;this.maxLeft=this.bpToPx(this.ref.end+1)-this.getWidth(),delete this.stripePercent;var r=[20,10,5,4,2,1];for(t=0;t<r.length;t++)if(100/r[t]*(.7*this.regularStripe)>3*this.getWidth()+this.regularStripe){this.stripePercent=r[t];break}this.stripePercent||(console.warn("stripeWidth too small: "+this.stripeWidth+", "+this.getWidth()),this.stripePercent=1);var o,a=this.stripeCount;if(a&&this.getX(),this.stripeCount=Math.round(100/this.stripePercent),this.scrollContainer.style.width=this.stripeCount*this.stripeWidth+"px",this.zoomContainer.style.width=this.stripeCount*this.stripeWidth+"px",a&&a!=this.stripeCount){var s=(o=Math.floor((a-this.stripeCount)/2))*this.stripeWidth,l=this.getX()-s;this.offset+=s,this.updateStaticElements({x:l}),this.rawSetX(l)}this.trackIterate(function(e,t){e.sizeInit(t.stripeCount,t.stripePercent,o)});var c=this.trackHeights&&this.trackHeights.length?Math.max(m.reduce(this.trackHeights,"+")+this.config.trackPadding*this.trackHeights.length,this.getHeight()):this.getHeight();this.scrollContainer.style.height=c+"px",this.containerHeight=c;var h=this.ref.end-this.ref.start;if(h<0)throw new Error("reference sequence "+this.ref.name+" has an invalid start coordinate, it is greater than its end coordinate.");var u=document.createElement("div");u.className="overview-pos",u.appendChild(document.createTextNode(n.addCommas(this.ref.end))),u.style.visibility="hidden",this.overview.appendChild(u);var d=1.2*u.clientWidth;this.overviewPosHeight=1.2*u.clientHeight,this.overview.removeChild(u);for(var f=1;f<30&&(this.overviewStripeBases=(Math.pow(f%3,2)+1)*Math.pow(10,Math.floor(f/3)),this.overviewStripes=Math.ceil(h/this.overviewStripeBases),!(this.overviewBox.w/this.overviewStripes>d))&&!(this.overviewStripes<2);f++);var g=100/(h/this.overviewStripeBases);this.overviewTrackIterate(function(e,t){e.clear(),e.sizeInit(t.overviewStripes,g),e.showRange(0,t.overviewStripes-1,t.ref.start-1,t.overviewStripeBases,t.overviewBox.w/(t.ref.end-t.ref.start))}),this.updateOverviewHeight(),this.updateScroll()},updateScroll:function(){var e={height:this.getHeight()};this.getY()>0&&this.containerHeight-this.getY()<e.height&&(e.y=this.setY(Math.max(0,this.containerHeight-e.height))),this.updateStaticElements(e)},overviewTrackIterate:function(e){var t=this.overview.firstChild;do{t&&t.track&&e.call(this,t.track,this)}while(t&&(t=t.nextSibling))},updateOverviewHeight:function(e,t){var i=0;this.overviewTrackIterate(function(e,t){i+=e.height,e.div.style.height=e.height+"px"}),this.overview.style.height=i+"px",this.overviewBox=dojo.marginBox(this.overview)},addOverviewTrack:function(e){var t=100/((this.ref.end-this.ref.start)/this.overviewStripeBases),i=document.createElement("div");i.className="track",i.style.height=this.overviewBox.h+"px",i.id="overviewtrack_"+e.name,i.track=e;var n=this;return e.setViewInfo(this,function(e){n.updateOverviewHeight()},this.overviewStripes,i,t,this.overviewStripeBases,this.pxPerBp,this.config.trackPadding),this.overview.appendChild(i),this.updateOverviewHeight(),i},trimVertical:function(e){var t;void 0===e&&(e=this.getY());for(var i=this.topSpace,n=e+this.getHeight(),r=0;r<this.tracks.length;r++)this.tracks[r].shown&&((t=i+this.trackHeights[r])>e&&i<n||this.tracks[r].hideAll(),i=t+this.config.trackPadding)},redrawTracks:function(){this.trackIterate(function(e){e.hideAll()}),this.showVisibleBlocks(!1)},hideRegion:function(e){this.overviewTrackIterate(function(t){t.hideRegion(e)}),this.trackIterate(function(t){t.hideRegion(e)})},redrawRegion:function(e){this.hideRegion(e),this.showVisibleBlocks(!1)},zoomIn:function(e,t,i){if(!this.animation&&(this._unsetPosBeforeZoom(),void 0===t&&(t=.5),void 0===i&&(i=1),0!=(i=Math.min(i,this.zoomLevels.length-1-this.curZoom))||this.pxPerBp!=this.zoomLevels[this.curZoom])){this.showWait();var n=this.getPosition();this.trimVertical(n.y);var r=this.zoomLevels[this.curZoom+i]/this.pxPerBp,o=this.pxToBp(n.x+this.offset+t*this.getWidth());this.curZoom+=i,this.pxPerBp=this.zoomLevels[this.curZoom],this.maxLeft=this.bpToPx(this.ref.end+1)-this.getWidth();for(var a=0;a<this.tracks.length;a++)this.tracks[a].startZoom(this.pxPerBp,o-t*this.getWidth()/this.pxPerBp,o+(1-t)*this.getWidth()/this.pxPerBp);new g(r,this,function(){this.zoomUpdate(t,o)},700,t)}},zoomToBaseLevel:function(e,t){if(!this.animation){var i=this.zoomLevels.length-1;if(this.curZoom!==i){this._setPosBeforeZoom(this.minVisible(),this.maxVisible(),this.curZoom),this.showWait(),this.trimVertical();var n=this.zoomLevels[i]/this.pxPerBp,r=t;this.curZoom=i,this.pxPerBp=this.zoomLevels[i],this.maxLeft=this.pxPerBp*this.ref.end-this.getWidth();for(var o=0;o<this.tracks.length;o++)this.tracks[o].startZoom(this.pxPerBp,r-.5*this.getWidth()/this.pxPerBp,r+.5*this.getWidth()/this.pxPerBp);new g(n,this,function(){this.zoomUpdate(.5,r)},700,.5)}else console.log("already zoomed to base level")}},zoomOut:function(e,t,i){if(!this.animation&&(this._unsetPosBeforeZoom(),void 0===i&&(i=1),0!=(i=Math.min(i,this.curZoom)))){this.showWait();var n=this.getPosition();this.trimVertical(n.y),void 0===t&&(t=.5);var r=this.zoomLevels[this.curZoom-i]/this.pxPerBp,o=this.bpToPx(this.ref.end)-(this.offset+n.x+this.getWidth());t=Math.max(t,1-o*r/(1-r)/this.getWidth()),o=n.x+this.offset-this.bpToPx(this.ref.start),t=Math.min(t,o*r/(1-r)/this.getWidth());var a=this.pxToBp(n.x+this.offset+t*this.getWidth());this.curZoom-=i,this.pxPerBp=this.zoomLevels[this.curZoom];for(var s=0;s<this.tracks.length;s++)this.tracks[s].startZoom(this.pxPerBp,a-t*this.getWidth()/this.pxPerBp,a+(1-t)*this.getWidth()/this.pxPerBp);this.minLeft=this.pxPerBp*this.ref.start,new g(r,this,function(){this.zoomUpdate(t,a)},700,t)}},zoomBackOut:function(e){if(!this.animation&&this.isZoomedToBase()){var t=this.posBeforeZoom.min,i=this.posBeforeZoom.max,n=this.posBeforeZoom.zoomIndex;this.posBeforeZoom=void 0,this.showWait();var r=this.zoomLevels[n]/this.pxPerBp,o=(t+i)/2;this.curZoom=n,this.pxPerBp=this.zoomLevels[n];for(var a=0;a<this.tracks.length;a++)this.tracks[a].startZoom(this.pxPerBp,o-.5*this.getWidth()/this.pxPerBp,o+.5*this.getWidth()/this.pxPerBp);this.minLeft=this.pxPerBp*this.ref.start;var s=this;new g(r,this,function(){s.setLocation(s.ref,t,i),s.zoomUpdate(.5,o)},700,.5)}},isZoomedToBase:function(){return void 0!==this.posBeforeZoom},_setPosBeforeZoom:function(e,t,i){this.posBeforeZoom={min:e,max:t,zoomIndex:i}},_unsetPosBeforeZoom:function(){this.posBeforeZoom=void 0},zoomUpdate:function(e,t){var i=this.elem.clientWidth,n=this.bpToPx(t)-e*i+i/2;this.stripeWidth=this.stripeWidthForZoom(this.curZoom),this.scrollContainer.style.width=this.stripeCount*this.stripeWidth+"px",this.zoomContainer.style.width=this.stripeCount*this.stripeWidth+"px";var r=Math.round(n/this.stripeWidth)-this.stripeCount/2|0;this.offset=r*this.stripeWidth,this.maxOffset=this.bpToPx(this.ref.end+1)-this.stripeCount*this.stripeWidth,this.maxLeft=this.bpToPx(this.ref.end+1)-this.getWidth(),this.minLeft=this.bpToPx(this.ref.start),this.zoomContainer.style.left="0px",this.setX(n-this.offset-i/2),dojo.forEach(this.uiTracks,function(e){e.clear()}),this.trackIterate(function(e){e.endZoom(this.pxPerBp,Math.round(this.stripeWidth/this.pxPerBp))}),this.showVisibleBlocks(!0),this.showDone(),this.showCoarse()},scrollUpdate:function(){var e=this.getX(),t=(this.stripeCount*this.stripeWidth/2-(this.getWidth()/2+e))/this.stripeWidth|0;if(0!=t){Math.abs(t);var i=this.offset-t*this.stripeWidth;if(this.offset!=i){this.offset=i,this.trackIterate(function(e){e.moveBlocks(t)});var n=e+t*this.stripeWidth;this.updateStaticElements({x:n}),this.rawSetX(n),this.stripeWidth}}},trackHeightUpdate:function(e,t){var i=this.getY();if(e in this.trackIndices){var n=this.trackIndices[e];Math.abs(t-this.trackHeights[n])<1||(this.trackTops[n]+this.trackHeights[n]-i<this.getHeight()/2&&i>0&&this.setY(i+(t-this.trackHeights[n])),this.trackHeights[n]=t,this.tracks[n].div.style.height=t+this.config.trackPadding+"px",this.layoutTracks(),this.setY(this.getY()),this.updateStaticElements({height:this.getHeight()}))}},showVisibleBlocks:function(e,t,i,n,r){var o=this;void 0===t&&(t=this.getPosition()),void 0===i&&(i=t.x-this.drawMargin*this.getWidth()),void 0===n&&(n=t.x+(1+this.drawMargin)*this.getWidth());var a=Math.max(0,i/this.stripeWidth|0),s=Math.min(this.stripeCount-1,n/this.stripeWidth|0),l=Math.round(this.stripeWidth/this.pxPerBp),c=Math.round(this.pxToBp(a*this.stripeWidth+this.offset));c-=1;var h=Math.round(this.pxToBp(this.offset)),u=Math.round(this.pxToBp(this.offset+this.stripeCount*this.stripeWidth));if(this.maxVisible()){var d=[];this.overviewTrackIterate(function(e,t){d.push(new Promise(function(i,n){e.showRange(0,t.overviewStripes-1,t.ref.start-1,t.overviewStripeBases,t.overviewBox.w/(t.ref.end-t.ref.start),void 0,void 0,i)}))}),this.trackIterate(function(e,t){d.push(new Promise(function(i,n){e.showRange(a,s,c,l,t.pxPerBp,h,u,i)}))}),this.updateStaticElements({height:this.getHeight(),width:this.getWidth(),x:this.getX(),y:this.getY()}),this.browser.publish("/jbrowse/v1/n/tracks/redraw");var f=function(){r&&r(),o.browser.publish("/jbrowse/v1/n/tracks/redrawFinished")};Promise.all(d).then(f,f)}},showTracks:function(e){var i=dojo.filter(e,function(e){return 0==this._getTracks([e.label]).length&&!this.desiredTracks[e.label]},this);if(i.length){t.forEach(e,function(e){this.desiredTracks[e.label]=!0},this),this.trackDndWidget.insertNodes(!1,i),this.updateTrackList();var n=this;window.setTimeout(function(){n.setY(1/0)},300)}},replaceTracks:function(e){t.forEach(e,function(e){var i,n,r=this.trackDndWidget.parent;t.forEach(r.children,function(t){if(!n){var r=t.track;r&&r.config.label==e.label?(n=1,this.trackDndWidget.delItem(t.id),t&&t.parentNode&&t.parentNode.removeChild(t)):i=t}},this),this.updateTrackList(),this.trackDndWidget.insertNodes(!1,[e],!1,i)},this),e.length&&this.updateTrackList()},hideTracks:function(e){var i=dojo.filter(e,function(e){return 0!=this._getTracks([e.label]).length},this);i.length&&(t.forEach(e,function(e){delete this.desiredTracks[e.label]},this),dojo.forEach(i,function(e){this.trackDndWidget.forInItems(function(t,i,n){if(e.label===t.data.label){this.trackDndWidget.delItem(i);var r=dojo.byId(i);r&&r.parentNode&&r.parentNode.removeChild(r)}},this)},this),this.updateTrackList())},pinTracks:function(e){var i=this._getTracks(e);return t.forEach(i,function(e){e.setPinned(!0)}),this.updateTrackList(),t.map(i,function(e){return e.name})},unpinTracks:function(e){var i=this._getTracks(e);return t.forEach(i,function(e){e.setPinned(!1)}),this.updateTrackList(),t.map(i,function(e){return e.name})},_getTracks:function(e){var t=[],i={count:e.length};return dojo.forEach(e,function(e){i[e]=1}),dojo.some(this.tracks,function(e){return i[e.name]&&(t.push(e),i.count--),!i.count},this),t},renderTrack:function(e){var t,i=this;if(!e)return null;if(dojo.some(this.tracks,function(i){return i.name==e.label&&(t=i,!0)}))return t.div;var n,r,o=function(e){return e.replace(/[^A-Za-z_0-9]/g,"_").toLowerCase()},a=e.label,s=dojo.create("div",{className:["track",o("track_"+e.type),o("track_"+a)].join(" "),id:"track_"+a});s.trackName=a;var l=dojo.hitch(this,function(){var t;try{t=this.browser.trackMetaDataStore.getItem(e.label).key}catch(e){}var o=new n({key:e.key||t,refSeq:this.ref,config:e,changeCallback:dojo.hitch(this,"showVisibleBlocks",!0),trackPadding:this.config.trackPadding,store:r,browser:this.browser});"function"==typeof r.setTrack&&r.setTrack(o),s.track=o,dojo.connect(s,"onclick",function(e){i.setTrackFocus(o,1)});var l=dojo.hitch(this,"trackHeightUpdate",a);o.setViewInfo(this,l,this.stripeCount,s,this.stripePercent,this.stripeWidth,this.pxPerBp,this.config.trackPadding),o.updateStaticElements({x:this.getX(),y:this.getY(),height:this.getHeight(),width:this.getWidth()}),this.updateTrackList()});return e.store||console.warn("configuration for track "+e.label+" has no store set",e),this.browser.getStore(e.store,function(t){r=t;var o=e.type||i.browser.getTrackTypes().trackTypeDefaults[r.config.type];dojo.global.require([o],function(t){"string"!=typeof t?(n=t,l()):console.error("Failed to load module: "+e.type)})}),s},setTrackFocus:function(e,t){if(1===t){if(null!==this.focusTrack){if(this.focusTrack==e)return;this.browser.publish("/jbrowse/v1/n/tracks/unfocus",this.focusTrack),this.focusTrack=null}this.focusTrack=e,this.browser.publish("/jbrowse/v1/n/tracks/focus",e)}if(0===t){if(null===this.focusTrack)return void console.log("no track in focus");this.browser.publish("/jbrowse/v1/n/tracks/unfocus",this.focusTrack),this.focusTrack=null}},trackIterate:function(e){var t;for(t=0;t<this.uiTracks.length;t++)e.call(this,this.uiTracks[t],this);for(t=0;t<this.tracks.length;t++)e.call(this,this.tracks[t],this)},updateTrackList:function(){var e=[],r=dojo.toJson(this.trackIndices||{}),o=this.trackContainer.firstChild;do{o.track&&e.push(o.track)}while(o=o.nextSibling);if(e=(e=t.map(e,function(e,t){return[e,t]})).sort(function(e,t){var i=e[0].isPinned()?1:0;return(t[0].isPinned()?1:0)-i||e[1]-t[1]}),(e=t.map(e,function(e){return e[0]}))[0]&&e[0].isPinned()){if(this.pinUnderlay||(this.pinUnderlay=i.create("div",{className:"pin_underlay",style:"top: "+this.topSpace},this.trackContainer)),!this.pinGridlinesTrack){var a=i.create("div",{className:"track",style:"top: 0px; height: 100%"},this.pinUnderlay);this.pinGridlinesTrack=new d({browser:this.browser,refSeq:this.ref}),this.pinGridlinesTrack.setViewInfo(this,function(){},this.stripeCount,a,this.stripePercent,this.stripeWidth,this.pxPerBp,this.config.trackPadding),this.uiTracks.push(this.pinGridlinesTrack)}}else this.pinUnderlay&&(i.destroy(this.pinUnderlay),delete this.pinUnderlay,this.uiTracks=t.filter(this.uiTracks,function(e){return e!==this.pinGridlinesTrack},this),delete this.pinGridlinesTrack);var s=this.tracks;this.tracks=e;for(var l={},c=new Array(this.tracks.length),h=0;h<e.length;h++)l[e[h].name]=h,e[h].name in this.trackIndices?c[h]=this.trackHeights[this.trackIndices[e[h].name]]:c[h]=0,c[h],this.trackIndices[e[h].name]=h;this.trackIndices=l,this.trackHeights=c,t.forEach(s||[],function(e){e.name in l||(n.removeAttribute(e.div,"track"),e.destroy())},this),this.layoutTracks(),this.updateScroll(),r!=dojo.toJson(this.trackIndices||{})&&(this.browser.publish("/jbrowse/v1/n/tracks/visibleChanged",[this.visibleTrackNames()]),this.showVisibleBlocks())},layoutTracks:function(){var e=this.topSpace,i=0,n=0,r=!1;t.forEach(this.tracks,function(t,o){this.trackTops[o]=e,i=e,t.isPinned()?(t.div.style.top=e+"px",r=!0):(t.div.style.top=e-this.y+(r?15:0)+"px",r=!1),t.shown&&(e+=this.trackHeights[o]+this.config.trackPadding,t.isPinned()&&(n=e))},this),n&&this.pinUnderlay&&(this.pinUnderlay.style.height=n+"px"),this.containerHeight=Math.max(e||0,Math.min(this.getY(),i)+this.getHeight()),this.scrollContainer.style.height=this.containerHeight+"px"}})}.apply(null,n))||(e.exports=r)},418:function(e,t,i){var n,r;n=[i(575),i(579),i(348),i(334)],void 0===(r=function(e,t,i,n){return e(i,{constructor:function(e){this.loaded=!0,this.labelClass=e.labelClass,this.posHeight=e.posHeight,this.height=Math.round(1.2*e.posHeight)},makeTrackLabel:function(){},makeTrackMenu:function(){},fillBlock:function(e){var t=e.blockIndex,i=e.block,r=e.leftBase,o=e.scale,a=this.chooseLabel(e),s=(r+1-a)*o/10,l=document.createElement("div"),c=n.addCommas(a);l.className=this.labelClass,l.style.left="-"+Number(c.length)/1.7+s+"ex",l.appendChild(document.createTextNode(c)),i.domNode.appendChild(l);var h=this.browser.getHighlight();h&&h.ref==this.refSeq.name&&this.renderRegionHighlight(e,h);var u=this.browser.getBookmarks();u&&this.renderRegionBookmark(e,u,this.refSeq.name,!0),this.heightUpdate(Math.round(1.2*this.posHeight),t),e.finishCallback()},chooseLabel:function(e){for(var t=e.leftBase+1,i=(e.rightBase,e.scale),n=1e6;n>0;n/=10)if(t%n*i<=3)return t-t%n;return t}})}.apply(null,n))||(e.exports=r)},419:function(e,t,i){var n,r;n=[i(575),i(606),i(346),i(580),i(596)],void 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i({id:"sortLength",value:"sortLength"}),new i({id:"noSort",value:"noSort"})],l=n.create("div",{className:"aux"},a);return s[0].placeAt(l),n.create("label",{for:"sortAlpha",innerHTML:"Sort refseqs by name"},l),s[1].placeAt(l),n.create("label",{for:"sortLength",innerHTML:"Sort refseqs by length"},l),s[2].placeAt(l),n.create("label",{for:"noSort",innerHTML:"Use order from file"},l),new t({iconClass:"dijitIconDelete",label:"Cancel",onClick:dojo.hitch(this,function(){r&&r(),this.dialog.hide()})}).placeAt(a),new t({iconClass:"dijitIconFolderOpen",label:"Open",onClick:function(){e&&e({trackConfs:o.trackList.getTrackConfigurations(),refSeqOrder:o.refSeqOrderChoice[0].checked?"alphabetic descending":o.refSeqOrderChoice[1].checked?"length descending":void 0}).then(function(){return o.dialog.hide()},function(e){console.error(e)})}}).placeAt(a),{domNode:a}}})}.apply(null,n))||(e.exports=r)},442:function(e,t,i){var n,r;n=[i(575),i(334),i(343),i(337)],void 0===(r=function(e,t,i,n){var r=0;return e(null,{name:"BGZFASTA",storeType:"JBrowse/Store/SeqFeature/BgzipIndexedFasta",fileExtension:"fasta.gz",fileExtensionMap:[".fasta.gz",".fa.gz",".fna.gz",".mfa.gz"],fileConfKey:"bgzfa",fileUrlConfKey:"urlTemplate",indexExtension:"fasta.gz.fai",indexExtensionMap:[".fasta.gz.fai",".fa.gz.fai",".fna.gz.fai",".mfa.gz.fai"],indexConfKey:"fai",indexUrlConfKey:"faiUrlTemplate",doubleIndexExtension:"gzi",doubleIndexExtensionMap:[".fasta.gz.gzi",".fa.gz.gzi",".fna.gz.gzi",".mfa.gz.gzi"],doubleIndexConfKey:"gzi",doubleIndexUrlConfKey:"gziUrlTemplate",tryResource:function(e,i){if(i.type==this.fileExtension){if(!(a=t.basename(i.file?i.file.name:i.url?i.url:"",this.fileExtensionMap)))return!1;for(var n in e){var o=e[n];if(t.basename(o[this.indexConfKey]?o[this.indexConfKey].url||o[this.indexConfKey].blob.name:o[this.indexUrlConfKey],this.indexExtensionMap)==a||t.basename(o[this.doubleIndexConfKey]?o[this.doubleIndexConfKey].url||o[this.doubleIndexConfKey].blob.name:o[this.doubleIndexUrlConfKey],this.doubleIndexExtensionMap)==a)return o[this.fileConfKey]=this._makeBlob(i),!0}return e[s=this.name+"_"+a+"_"+r++]={type:this.storeType,name:s,fileBasename:a},e[s][this.fileConfKey]=this._makeBlob(i),!0}if(i.type==this.indexExtension){if(!(a=t.basename(i.file?i.file.name:i.url?i.url:"",this.indexExtensionMap)))return!1;for(var n in e)if(o=e[n],t.basename(o[this.fileConfKey]?o[this.fileConfKey].url||o[this.fileConfKey].blob.name:o[this.fileConfKey],this.fileExtensionMap)==a||t.basename(o[this.doubleIndexConfKey]?o[this.doubleIndexConfKey].url||o[this.doubleIndexConfKey].blob.name:o[this.doubleIndexUrlConfKey],this.doubleIndexExtensionMap)==a)return o[this.indexConfKey]=this._makeBlob(i),!0;return 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0===(r=function(e,t,i,n,r,o,a,s,l){var c=s.dojof;return e("JBrowse.View.TrackList.Faceted",null,{constructor:function(e){this.browser=e.browser,this.tracksActive={},this.config=e,this.storeReady=new n,this.gridReady=new n,this.ready=r([this.storeReady,this.gridReady]),this._isSelectableFacet=this._coerceFilter(e.selectableFacetFilter||function(e,i){return i.getFacetStats(e).avgBucketSize>1&&!t.some(i.getLabelAttributes().concat(i.getIdentityAttributes()),function(t){return t==e})}),this.displayColumns=e.displayColumns,this._isDisplayableColumn=this._coerceFilter(e.displayColumnFilter||function(e){return"label"!=e.toLowerCase()}),this.trackDataStore=e.trackMetaData,this.browser.subscribe("/jbrowse/v1/c/tracks/show",i.hitch(this,"setTracksActive")),this.browser.subscribe("/jbrowse/v1/c/tracks/hide",i.hitch(this,"setTracksInactive")),this.browser.subscribe("/jbrowse/v1/c/tracks/delete",i.hitch(this,"setTracksInactive")),this.renderInitial(),this.trackDataStore.onReady(this,function(){var e=this;this.renderSelectors(),dojo.connect(this.dataGrid.selection,"onSelected",this,function(e){this._ifNotSuppressed("selectionEvents",function(){this._suppress("gridUpdate",function(){this.browser.publish("/jbrowse/v1/v/tracks/show",[this.dataGrid.getItem(e).conf])})})}),dojo.connect(this.dataGrid.selection,"onDeselected",this,function(e){this._ifNotSuppressed("selectionEvents",function(){this._suppress("gridUpdate",function(){this.browser.publish("/jbrowse/v1/v/tracks/hide",[this.dataGrid.getItem(e).conf])})})}),this._updateFacetCounts(),this._updateMatchCount(),this.storeReady.resolve(),dojo.connect(this.trackDataStore,"onFetchSuccess",this,function(){e._updateGridSelections(),e._updateMatchCount()})})},_coerceFilter:function(e){return"string"==typeof e&&(e=[e]),dojo.isArray(e)&&(e=function(i,n){return t.some(e,function(e){return n==e})}),e},_ifNotSuppressed:function(e,i){if("string"==typeof e&&(e=[e]),this.suppress||(this.suppress={}),!t.some(e,function(e){return 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n=dojo.byId("facet_title_"+e);if(t.every(this.facetSelectors[e]||[],function(e){return dojo.hasClass(e,"disabled")},this)&&dojo.addClass(n,"disabled"),t.some(this.facetSelectors[e]||[],function(e){return dojo.hasClass(e,"selected")},this)){var r=i.hitch(this,function(t){this._clearFacetControl(e),this._async(function(){this.updateQuery(),this._updateFacetCounts(e)},this).call(),t.stopPropagation()});dojo.addClass(n.parentNode.parentNode,"activeFacet"),dojo.query("> a",n).forEach(function(e){e.onclick=r},this).attr("title","clear selections")}else dojo.removeClass(n.parentNode.parentNode,"activeFacet"),dojo.query("> a",n).onclick(function(){return!1}).removeAttr("title")},updateQuery:function(){this._suppressRecursion("_updateQuery")},_updateQuery:function(){var e={},i=function(e){return dojo.hasClass(e,"selected")};(function(){var n=this.facetSelectors["My Tracks"],r={};if(dojo.forEach(n,function(e){r[e.facetValue]=e}),i(r["Currently Active"])){var o=c.keys(this.tracksActive||{});e.label=s.uniq((e.label||[]).concat(o))}if(i(r["Recently Used"])){var a=dojo.map(this.browser.getRecentlyUsedTracks(),function(e){return e.label});e.label=s.uniq((e.label||[]).concat(a))}e.label&&e.label.length||!t.some(n,i)||(e.label=["FAKE LABEL THAT IS HIGHLY UNLIKELY TO EVER MATCH ANYTHING"])}).call(this),this.textFilterInput.value.length&&(e.text=this.textFilterInput.value),dojo.forEach(this.trackDataStore.getFacetNames(),function(t){var n=this.facetSelectors[t];if(n){var r=dojo.map(dojo.filter(n,i),function(e){return e.facetValue});r.length&&(e[t]=r)}},this),this.query=e,this.dataGrid.setQuery(this.query),this._updateMatchCount()},_updateMatchCount:function(){var e=this.dataGrid.store.getCount();dojo.query(".matching_record_count",this.containerElem).forEach(function(t){t.innerHTML=s.addCommas(e)+" "+(c.keys(this.query||{}).length?"matching ":"")+"track"+(1==e?"":"s")},this)},_updateGridSelections:function(){var 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i=a._getMismatches(e),n=0;n<i.length;n++){var r=i[n];p(e.get("start")+r.start,e.get("start")+r.start+r.length,function(e,i){var n=f[e];n.getNested("reference").decrement(t,i);var o=r.base;"insertion"==r.type?o="ins "+o:"skip"==r.type&&(o="skip"),n.getNested(o).increment(t,i)})}}},function(n){var r,c=function(){for(var e=0;e<f.length;e++){var r=s+h*e;t(new o({start:r,end:r+h,score:f[e]}))}i(n)};1==h?a.browser.getStore("refseqs",function(t){t?t.getFeatures(e,function(e){r=e.get("seq")},function(){if(r)for(var e=s;e<=l;e++){var t=u(e);f[t]&&(f[t].refBase=r[t])}c()},c):c()}):c()},n)},saveStore:function(){return{urlTemplate:this.config.bam.url,baiUrlTemplate:this.config.bai.url}}})}.apply(null,n))||(e.exports=r)},463:function(e,t,i){var n,r;n=[i(575),i(579),i(1049),i(596),i(334),i(341)],void 0===(r=function(e,t,i,n,r,o){return e(null,{constructor:function(e){void 0!==e?(this.width=e.width||78,this.htmlMaxRows=e.htmlMaxRows||15,this.track=e.track,this.canSaveFiles=e.track&&e.track._canSaveFiles&&e.track._canSaveFiles(),"function"==typeof this.initData&&this.initData(e)):this.width=78},renderHTML:function(e,a,s){var l=this,c=this.renderText(e,a),h=c.match(/\n/g).length+1,u=t.create("div",{className:"fastaView"},s);if(this.canSaveFiles){var d=(new i).placeAt(u);"function"==typeof(l=this).addButtons&&l.addButtons(e,a,d),d.addChild(new n({iconClass:"dijitIconSave",label:"FASTA",title:"save as FASTA",disabled:!o("save-generated-files"),onClick:function(){l.track._fileDownload({format:"FASTA",filename:r.assembleLocString(e)+".fasta",data:c})}}))}var f=0;return t.create("textarea",{className:"fasta",cols:this.width,rows:Math.min(h,this.htmlMaxRows),readonly:!0},u).innerHTML=c.replace(/\n/g,function(){return f++?"":"\n"}),u},renderText:function(e,t){return">"+e.ref+" "+r.assembleLocString(e)+(e.type?" class="+e.type:"")+" length="+(e.end-e.start)+"\n"+this._wrap(t,this.width)},_wrap:function(e,t){return t=t||this.width,e.replace(new RegExp("(.{"+t+"})","g"),"$1\n")}})}.apply(null,n))||(e.exports=r)},464:function(e,t,i){var n,r;n=[i(575),i(341),i(348)],void 0===(r=function(e,t,i){return e(i,{constructor:function(e){this.trackPadding=e.trackPadding||0},handleImageError:function(e){(e.currentTarget||e.srcElement).style.display="none",dojo.stopEvent(e)},makeImageLoadHandler:function(e,i,n,r){var o=dojo.hitch(this,function(){return this.imageHeight=e.height,e.style.height=e.height+"px",e.style.width=e.baseWidth/n*100+"%",this.heightUpdate(e.height,i),r&&r(),!0});return t("ie")?function(){window.setTimeout(o,250)}:o},fillBlock:function(e){var t=e.blockIndex,i=e.block,n=e.leftBase,r=e.rightBase,o=e.scale,a=e.finishCallback||function(){},s=r-n;this.store.getImages({scale:o,start:n,end:r},dojo.hitch(this,function(e){dojo.forEach(e,function(e){if(e.className="image-track",!e.parentNode||!e.parentNode.parentNode){switch(e.style.position="absolute",e.style.left=(e.startBase-n)/s*100+"%",this.config.align){case"top":e.style.top="0px";break;case"bottom":default:e.style.bottom=this.trackPadding+"px"}i.domNode.appendChild(e)}var r=this.makeImageLoadHandler(e,t,s);e.complete?r():e.onload=r},this),a()}),dojo.hitch(this,function(e){404==e.status?a():this.fillBlockError(t,i,e),a()}))},startZoom:function(e,t,i){this.empty},endZoom:function(e,t){this.clear()},clear:function(){this.inherited(arguments)},transfer:function(e,t,i,n,r){if(e&&t)for(var o,a=e.domNode.childNodes,s=t.startBase,l=t.endBase,c=0;c<a.length;c++)"startBase"in(o=a[c])&&o.startBase<l&&o.startBase+o.baseWidth>s&&(o.style.left=(o.startBase-s)/(l-s)*100+"%",t.domNode.appendChild(o))}})}.apply(null,n))||(e.exports=r)},465:function(e,t,i){var n,r;n=[i(575),i(336),i(334),i(375)],void 0===(r=function(e,t,i,n){return e(t,{constructor:function(e){this.store=e.store},getGlobalStats:function(e,t){e({})},getFeatures:function(e,t,i,r){var o=e.start,a=e.end,s=e.scale||("basesPerSpan"in e?1/e.basesPerSpan:10),l=a-o,c=Math.ceil(1/s),h=new Array(Math.ceil(l/c)),u=function(e,t){var i=(e-o-1)/c,n=Math.floor(i);return{bin:n,overlap:t?1-(i-n):i-n}};this.store.getFeatures(e,function(e){var t=u(e.get("start"),!1),i=u(e.get("end"),!0);t.bin==i.bin?h[t.bin]=(h[t.bin]||0)+i.overlap+t.overlap-1:(h[t.bin]=(h[t.bin]||0)+t.overlap,h[i.bin]=(h[i.bin]||0)+i.overlap);for(var n=t.bin+1;n<=i.bin-1;n++)h[n]=(h[n]||0)+1},function(){for(var e=0;e<h.length;e++){var r=h[e]||0,a=o+c*e;t(new n({start:a,end:a+c,score:r}))}i()},r)}})}.apply(null,n))||(e.exports=r)},466:function(e,t,i){var n,r;n=[i(575),i(647),i(711),i(596),i(579),i(361)],void 0===(r=function(e,t,i,n,r,o){return e(null,{constructor:function(e){this.newTrackKey=e.trackConfig?e.trackConfig.key:e.key,this.track=e.track,this.newStore=e.store,this.opTree=this.track.opTree,this.currType=this.track.currType,this.oldType=this.track.oldType,this.supportedBy=this.track.supportedBy,this.displayType=this.track.displayType,this.storeToKey=this.track.config.storeToKey,this.newDisplayType=this.displayType,this.inWords=this.track.inWords,this.trackClasses=this.track.trackClasses,this.dialog=new t({title:"Combine with "+this.newTrackKey,style:"width: 475px;",className:"combinationDialog"});var i=this._dialogContent(this.newStore);this.dialog.set("content",i)},_dialogContent:function(e){var t=[],i=this._allAllowedOperations(e);if(!i.length){t.push(r.create("div",{innerHTML:"No operations are possible for this track."}));var n=this._createActionBar(!1);return t.push(n),t}t.push(r.create("div",{className:"intro",innerHTML:"Adding "+this.currType+" track "+this.newTrackKey+" to the combination."}));var o=r.create("div",{id:this.track.name+"_maskOpList"}),a=this,s=this._makeUnique(i.map(function(e){return e.substring(0,4)}));for(var l in t.push(o),this.changingOpPanel=r.create("div",{id:this.track.name+"_suffixLists"}),t.push(this.changingOpPanel),t.push(r.create("h2",{innerHTML:"Combination formula"})),this.formulaPreview=r.create("div",{innerHTML:"(nothing currently selected)",className:"formulaPreview"}),t.push(this.formulaPreview),this.maskOpButtons=[],s){var c=this._renderRadioButton(o,s[l],this.inWords[s[l]]);this.maskOpButtons.push(c),c.on("change",function(t){if(t){delete this.whichArg,delete this.opValue,a.maskOpValue=this.value;var n="1111"==a.maskOpValue?3:1;a.opListDivs=[],a.whichArgDivs=[],a.opValue=[],a.whichArg=[],a.changingOpPanel.innerHTML="";for(var o=0;o<n;o++){var s=r.create("div",{id:a.track.name+"_suffix"+o,style:{display:"inline-block","padding-left":"15px","vertical-align":"top"}},a.changingOpPanel);3==n&&r.create("h2",{innerHTML:["Main","Mask","Display"][o]},s);var l=r.create("h3",{innerHTML:"Combining operation",style:{display:"none"}},s);a.opListDivs[o]=r.create("div",{id:a.track.name+"_OpList"+o},s);var c=r.create("h3",{innerHTML:"Left or right?",style:{display:"none"}},s);a.whichArgDivs[o]=r.create("div",{id:a.track.name+"_whichArg"+o},s);var h=a._generateSuffixRadioButtons(this.value,i,e,a.opListDivs[o],o),u=a._maybeRenderWhichArgDiv(this.value,e,a.whichArgDivs[o],o);u.length&&!a.whichOpArg&&u[0].set("checked","checked"),h.length&&h[0].set("checked","checked"),l.style.display=h.length?"":"none",c.style.display=u.length?"":"none"}}})}return s[0]&&this.maskOpButtons[0].set("checked","checked"),s.length<=1&&(s.length&&"0000"!=s[0]||(o.style.display="none"),this.maskOpButtons[0].set("disabled","disabled")),n=this._createActionBar(),t.push(n),t},_createActionBar:function(e){void 0===e&&(e=!0);var t=r.create("div",{className:"dijitDialogPaneActionBar"});new n({iconClass:"dijitIconDelete",label:"Cancel",onClick:dojo.hitch(this,function(){this.shouldCombine=!1,this.dialog.hide()})}).placeAt(t);var i=new n({label:"Combine tracks",onClick:dojo.hitch(this,function(){this.shouldCombine=!0,this.dialog.hide()})});return i.placeAt(t),e||i.set("disabled","disabled"),t},_generateSuffixRadioButtons:function(e,t,i,n,o){for(o=o||0;n.firstChild;)dijit.byId(n.firstChild.id)&&dijit.byId(n.firstChild.id).destroy(),r.destroy(n.firstChild);var a=[],s=this,l=this._generateSuffixList(e,t,o);for(var c in l){var h=this._renderRadioButton(n,l[c],this.inWords[l[c]]);a.push(h),h.on("change",function(e){if(e){s.opValue[o]=this.value;var t=s._getOperation();s.previewTree=s._createPreviewTree(t,i),s.formulaPreview.innerHTML=s._generateTreeFormula(s.previewTree)}})}return a},_getOperation:function(){for(var e=this.maskOpValue,t=0;t<this.opListDivs.length;t++)e=e+this.opValue[t]+this.whichArg[t];return e},_generateSuffixList:function(e,t,i){return void 0===i&&(i=0),this._makeUnique(t.filter(function(t){return-1!=t.indexOf(e)}).map(function(t){return t.substring(e.length+i,e.length+i+1)}))},_maybeRenderWhichArgDiv:function(e,t,i,n){for(n=n||0;i.firstChild;)dijit.byId(i.firstChild.id)&&dijit.byId(i.firstChild.id).destroy(),r.destroy(i.firstChild);var o=[],a=this,s=function(e,i){if(e){a.whichArg[n]=void 0===i?this.value:i;var r=a._getOperation();a.previewTree=a._createPreviewTree(r,t),a.formulaPreview.innerHTML=a._generateTreeFormula(a.previewTree)}};if("0020"==e)s(!0,"L");else if("0002"==e)s(!0,"R");else if("1111"==e&&0==n)s(!0,"?");else{var l=this._renderRadioButton(i,"L","left"),c=this._renderRadioButton(i,"R","right");o.push(l),o.push(c),l.on("change",s),c.on("change",s)}return o},_makeUnique:function(e){var t={};return e.filter(function(e){return!t[e]&&(t[e]=!0,!0)})},_createPreviewTree:function(e,t){var i=t.opTree?t.opTree.clone():new o({Value:t});i&&i.recursivelyCall(function(e){e.highlighted=!0});var n=new o(this.opTree),r=i;return"01"==e.substring(0,2)&&(n=i,r=this.opTree),this._applyTreeTransform(e.substring(2),n,r)},_applyTreeTransform:function(e,t,i){var n,r=t,a=t,s=i;switch(e.substring(0,2)){case"10":a=t.leftChild,n="leftChild",s=i;break;case"01":a=t.rightChild,n="rightChild",s=i;break;case"11":(r=new o({Value:e.substring(2,3)})).leftChild=this._transformTree(e.substring(4),t.leftChild,i.leftChild),e=e.substring(4),n="rightChild",a=t.rightChild,s=i.rightChild;break;case"20":this.newDisplayType=this.oldType;break;case"02":this.newDisplayType=this.currType}var l=this._transformTree(e.substring(2),a,s);return null==n?l:(r[n]=l,r)},_transformTree:function(e,t,i){var n=e.substring(0,1),r=new o({Value:n});return"L"==e.substring(1,2)?(r.add(i),r.add(t)):(r.add(t),r.add(i)),r},_allAllowedOperations:function(e){var t=[],i="";if(i+="mask"==this.oldType?"1":"0","00"==(i+="mask"==this.currType?"1":"0")){if(this.oldType==this.currType){var n=i+"00";for(var r in a=this.trackClasses[this.currType].allowedOps)t.push(n+a[r])}if(a=this.trackClasses.mask.allowedOps,"set"==this.currType)for(var r in n=i+"20",a)t.push(n+a[r]);if("set"==this.oldType)for(var r in n=i+"02",a)t.push(n+a[r])}else if("10"==i){if("set"==this.currType)for(var r in n=i+"10",a=this.trackClasses[this.currType].allowedOps)t.push(n+a[r]);if(this.currType==this.displayType)for(var r in n=i+"01",a=this.trackClasses[this.currType].allowedOps)t.push(n+a[r])}else if("01"==i){if("set"==this.oldType)for(var r in n=i+"10",a=this.trackClasses[this.oldType].allowedOps)t.push(n+a[r]);var o=this.supportedBy[e.stores.display.config.type];if(this.oldType==o){i+="01";var a=this.trackClasses[o].allowedOps;for(var r in a)t.push(i+a[r])}}else if("11"==i)for(var r in i+="11",a=this.trackClasses.set.allowedOps)if((o=this.supportedBy[e.stores.display.config.type])==this.displayType){var s=this.trackClasses[o].allowedOps;for(var l in s){var c=this.trackClasses.mask.allowedOps;for(var h in c)t.push(i+c[h]+a[r]+s[l])}}return t},_renderRadioButton:function(e,t,n){var o=e.id+"_rb_"+t;dijit.byId(o)&&(r.destroy(dijit.byId(o).domNode),dijit.byId(o).destroy()),n=n||t;var a=new i({name:e.id+"_rb",id:o,value:t});return e.appendChild(a.domNode),r.create("label",{for:a.id,innerHTML:n},e),e.appendChild(r.create("br")),a},run:function(e,t,i){this.dialog.show();var n=this;this.dialog.on("Hide",function(){n.previewTree&&n.previewTree.recursivelyCall(function(e){e.highlighted&&delete e.highlighted}),n.shouldCombine?e(n.previewTree,n.newStore,n.newDisplayType):t()})},_generateTreeFormula:function(e){return e&&void 0!==e?e.isLeaf()?'<span class="leaf'+(e.highlighted?" highlighted":"")+'">'+(e.get().name?this.storeToKey[e.get().name]?this.storeToKey[e.get().name]:e.get().name:e.get())+"</span>":'<span class="tree">('+this._generateTreeFormula(e.left())+' <span class="op" title="'+this.inWords[e.get()]+'">'+e.get()+"</span> "+this._generateTreeFormula(e.right())+")</span>":'<span class="null">NULL</span>'},destroyRecursive:function(){this.dialog.destroyRecursive()}})}.apply(null,n))||(e.exports=r)},467:function(e,t,i){var n,r;n=[i(575),i(576)],void 0===(r=function(e,t){return e(null,{_refreshContextMenu:function(e){e.contextMenu||(e.contextMenu=this._makeFeatureContextMenu(e,this.getConfForFeature("menuTemplate",e.f))),e.contextMenuTimeout&&window.clearTimeout(e.contextMenuTimeout),e.contextMenuTimeout=window.setTimeout(function(){e.contextMenu&&(e.contextMenu.destroyRecursive(),delete e.contextMenu),delete e.contextMenuTimeout},3e4)},_makeFeatureContextMenu:function(e,i){var n=t.mixin({track:this,feature:e.f,callbackArgs:[this,e.f,e]},e);i=this._processMenuSpec(dojo.clone(i),n);var r=this._renderContextMenu(i,n);return r.startup(),r}})}.apply(null,n))||(e.exports=r)},468:function(e,t,i){var n;void 0===(n=function(){var e=function(){this.callbacks=[]};return e.prototype.then=function(e){"value"in this?e(this.value):this.callbacks.push(e)},e.prototype.resolve=function(e){this.value=e;var t=this.callbacks;delete this.callbacks;for(var i=0;i<t.length;i++)t[i](this.value)},e}.apply(null,[]))||(e.exports=n)},469:function(e,t,i){var n,r;n=[i(575),i(577),i(595),i(350)],void 0===(r=function(e,t,i,n){return e(n,{constructor:function(e){this.track=e.track,this.booleanAlpha=.17,i.before(this,"renderFeature",function(e,t){if(t.m){var i=Math.floor(t.l),n=Math.ceil(t.w+t.l)-i;if(t.m.sort(function(e,t){return e.l-t.l}),(a=t.m[0]).l<=i){var r=t.m[0].l;for(var o in t.m){var a;if((a=t.m[o]).l>r)break;r=a.l+a.w}r>=i+n&&(e.globalAlpha=this.booleanAlpha,t.noMask=!0)}}},!0),i.after(this,"renderFeature",function(e,t){t.m&&!t.noMask?this.maskBySpans(e,t):t.noMask&&(delete t.noMask,e.globalAlpha=1)},!0)},getStyle:function(e,t){return this.getConfForFeature("style."+t,e)},getConfForFeature:function(e,t){return this.getConf(e,[t,e,this,this.track])},mouseoverFeature:function(e,t){this.renderFeature(e,t),e.fillStyle=this.getStyle(t.f,"mouseovercolor"),e.fillRect(t.rect.l,t.t,t.rect.w,t.rect.h)},_getFeatureRectangle:function(e,t){var i=e.block,n={l:i.bpToX(t.get("start")),h:this._getFeatureHeight(e,t),viewInfo:e,f:t,glyph:this};n.w=i.bpToX(t.get("end"))-n.l,this._addMasksToRect(e,t,n)},_addMasksToRect:function(e,i,n){var r=e.block;return i.masks&&(n.m=[],t.forEach(i.masks,function(e){var t={l:r.bpToX(e.start)};t.w=r.bpToX(e.end)-t.l,n.m.push(t)})),n},layoutFeature:function(e,t,i){var n=this._getFeatureRectangle(e,i),r=e.scale,o=e.leftBase,a=n.l/r+o,s=(n.l+n.w)/r+o;return n.t=t.addRect(i.id(),a,s,n.h,i),null===n.t?null:(n.f=i,n)},renderFeature:function(e,t){},maskBySpans:function(e,i){var n=e.canvas.height,r=this,o=dojo.create("canvas",{height:n,width:e.canvas.width}),a=o.getContext("2d"),s=Math.floor(i.l),l=Math.ceil(i.w+i.l)-s;t.forEach(i.m,function(t){try{t.l<s&&(t.w+=t.l-s,t.l=s),t.w>l&&(t.w=l),t.l<0&&(t.w+=t.l,t.l=0),t.l+t.w>s+l&&(t.w=l+s-t.l),t.l+t.w>e.canvas.width&&(t.w=e.canvas.width-t.l),a.drawImage(e.canvas,t.l,i.t,t.w,i.h,t.l,i.t,t.w,i.h),e.globalAlpha=r.booleanAlpha,e.clearRect(t.l,i.t,t.w,i.h),e.drawImage(o,t.l,i.t,t.w,i.h,t.l,i.t,t.w,i.h),e.globalAlpha=1}catch(e){}})},_getFeatureHeight:function(e,t){return this.getStyle(t,"height")},updateStaticElements:function(e,t,i){}})}.apply(null,n))||(e.exports=r)},470:function(e,t,i){var n,r;n=[i(575),i(576),i(393)],void 0===(r=function(e,t,i){var n={};return e(i,{makeFeatureLabel:function(e,t){var i=this.getFeatureLabel(e);if(!i)return null;i=""+i;var n=this.getStyle(e,"textFont"),r=t?this.makeBottomOrTopLabel(i,n,t):this.makePopupLabel(i,n);return r.fill=this.getStyle(e,"textColor"),r},makeFeatureDescriptionLabel:function(e,t){var i=this.getFeatureDescription(e);if(!i)return null;i=""+i;var n=this.getStyle(e,"text2Font"),r=t?this.makeBottomOrTopLabel(i,n,t):this.makePopupLabel(i,n);return r.fill=this.getStyle(e,"text2Color"),r},makeSideLabel:function(e,t,i){if(!e)return null;var n=this.measureFont(t),r=Math.round((e.length*n.w-this.track.getConf("maxFeatureGlyphExpansion"))/n.w);return r>0&&(e=e.slice(0,e.length-r-1)+"…"),{text:e,font:t,baseline:"middle",w:n.w*e.length,h:n.h}},makeBottomOrTopLabel:function(e,t,i){if(!e)return null;var n=this.measureFont(t),r=Math.round((e.length*n.w-i.w-this.track.getConf("maxFeatureGlyphExpansion"))/n.w);return r>0&&(e=e.slice(0,e.length-r-1)+"…"),{text:e,font:t,baseline:"bottom",w:n.w*e.length,h:n.h}},makePopupLabel:function(e,t){if(!e)return null;var i=this.measureFont(t);return{text:e,font:t,w:i.w*e.length,h:i.h}},measureFont:function(e){return n[e]||(n[e]=function(){var 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n=i.read1.get("start"),r=i.read1.get("end"),a=i.read2.get("start"),s=i.read2.get("end");if(o.intersect(n,r,a,s)){var l=r>s?n:a,c=n>a?s:r,h=t.viewInfo.block,u=h.bpToX(l),d=h.bpToX(c);if(d-u>2){e.fillStyle=this.getStyle(i,"overlapColor"),e.fillRect(u,t.rect.t,d-u,t.rect.h);var f=this.getStyle(i,"overlapStroke");if(f&&(e.strokeStyle=f,e.strokeRect(u,t.rect.t,d-u,t.rect.h)),t.viewInfo.scale>.2){var g=this._getMismatches(i.read1),p=this._getMismatches(i.read2);if(!g&&!p)return;for(var b=[],m=0;m<g.length;m++){for(var v=!1,w=0;w<p.length;w++)n+g[m].start==a+p[w].start&&l<=n+g[m].start&&c>=n+g[m].start&&(v=!0,b.push({start:g[m].start,base1:g[m].base,base2:p[w].base,type:"mismatch",length:1}));"mismatch"==g[m].type&&l<=n+g[m].start&&c>=n+g[m].start&&!v&&b.push({start:g[m].start,base1:g[m].base,base2:"-",type:"mismatch",length:1})}for(0!==b.length&&this._drawOverlappingMismatches(e,t,b,n),b=[],m=0;m<p.length;m++){var y=!1;for(w=0;w<g.length;w++)n+g[w].start==a+p[m].start&&l<=a+p[m].start&&c>=a+p[m].start&&(y=!0);"mismatch"==p[m].type&&l<=a+p[m].start&&c>=a+p[m].start&&!y&&b.push({start:p[m].start,base1:p[m].base,base2:"-",type:"mismatch",length:1})}0!==b.length&&this._drawOverlappingMismatches(e,t,b,a)}}}}else this.inherited(arguments)},renderSegments:function(e,t){this.renderBox(e,t.viewInfo,t.f.read1,t.t,t.rect.h,t.f),this.renderBox(e,t.viewInfo,t.f.read2,t.t,t.rect.h,t.f)},renderConnector:function(e,t){var i=this.getStyle(t.f,"connectorColor");if(i){e.fillStyle=i;var n=this.getStyle(t.f,"connectorThickness");e.fillRect(t.rect.l,Math.round(t.rect.t+(t.rect.h-n)/2),t.rect.w,n)}},_drawOverlappingMismatches:function(e,i,n,r){var o=i.viewInfo.block,a=o.scale,s=this.getCharacterMeasurements(e);e.textBaseline="middle",t.forEach(n,function(t){var n=r+t.start,l=r+t.start+t.length,c={h:(i.rect||{}).h||i.h,l:o.bpToX(n),t:i.rect.t};c.w=Math.max(o.bpToX(l)-c.l,1),"mismatch"==t.type&&(t.base1==t.base2?e.fillStyle=this.track.colorForBase("deletion"==t.type?"deletion":t.base1):e.fillStyle="black",e.fillRect(c.l,c.t,c.w,c.h),c.w>=s.w&&c.h>=s.h-3&&(e.font=this.config.style.mismatchFont,t.base1==t.base2?(e.fillStyle="black",e.fillText(t.base1,c.l+(c.w-s.w)/2+1,c.t+c.h/2)):a>=10&&(e.fillStyle="white",e.fillText(t.base1+"/"+t.base2,c.l+(c.w-2*s.w)/2+1,c.t+c.h/2))))},this),e.textBaseline="alphabetic"},_defaultConfig:function(){return this._mergeConfigs(dojo.clone(this.inherited(arguments)),{style:{connectorColor:r.connectorColor,connectorThickness:1,overlapColor:"lightgrey",overlapStroke:"grey"}})}})}.apply(null,n))||(e.exports=r)},472:function(e,t,i){var n,r;n=[i(575),i(576),i(577),i(355),i(396),i(397)],void 0===(r=function(e,t,i,n,r,o){return e(n,{_defaultConfig:function(){return this._mergeConfigs(this.inherited(arguments),{transcriptType:"mRNA",noncodingType:["ncRNA","lnc_RNA","lncRNA","miRNA"],style:{transcriptLabelFont:"normal 10px Univers,Helvetica,Arial,sans-serif",transcriptLabelColor:"black",textFont:"bold 12px Univers,Helvetica,Arial,sans-serif"},labelTranscripts:!0,marginBottom:0})},_boxGlyph:function(){return this.__boxGlyph||(this.__boxGlyph=new n({track:this.track,browser:this.browser,config:this.config}))},_ntGlyph:function(){return this.__ntGlyph||(this.__ntGlyph=new r({track:this.track,browser:this.browser,config:this.config}))},_ptGlyph:function(){return this.__ptGlyph||(this.__ptGlyph=new o({track:this.track,browser:this.browser,config:this.config}))},_getFeatureRectangle:function(e,i){var n=t.mixin({},e);n.showDescriptions=n.showLabels=!1;var r=i.children();if(!r||!r.length)return this.inherited(arguments);var o=1,a={l:0,h:0,r:0,w:0,subRects:[],viewInfo:e,f:i,glyph:this};if(r&&r.length){r.sort(function(e,t){return(e.get("name")||e.get("id")||"").localeCompare(t.get("name")||t.get("id")||"")}),a.l=1/0,a.r=-1/0;for(var s=this.getConfForFeature("transcriptType",i),l=this.getConfForFeature("noncodingType",i),c=0;c<r.length;c++){var h=(r[c].get("type")==s?this._ptGlyph():l.includes(r[c].get("type"))?this._ntGlyph():this._boxGlyph())._getFeatureRectangle(n,r[c]);if(o=c==r.length-1?0:1,h.t=h.rect.t=a.h&&"collapsed"!=e.displayMode?a.h+o:0,e.showLabels&&this.getConfForFeature("labelTranscripts",r[c])){var u=this.makeSideLabel(this.getFeatureLabel(r[c]),this.getStyle(r[c],"transcriptLabelFont"),h);u&&(u.fill=this.getStyle(r[c],"transcriptLabelColor"),h.label=u,h.l-=u.w,h.w+=u.w,u.h>h.h&&(h.h=u.h),u.yOffset=Math.floor(h.h/2),u.xOffset=0)}a.subRects.push(h),a.r=Math.max(a.r,h.l+h.w-1),a.l=Math.min(a.l,h.l),a.h=h.t+h.h+o}}return a.w=Math.max(a.r-a.l+1,2),delete 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e=function(){this.callbacks=[],this.errbacks=[]};return e.prototype.then=function(e,t){"value"in this?e(this.value):"error"in this?t(this.error):(this.callbacks.push(e),this.errbacks.push(t))},e.prototype.resolve=function(e){this.value=e,delete this.errbacks;var t=this.callbacks;delete this.callbacks;for(var i=0;i<t.length;i++)t[i](this.value)},e.prototype.reject=function(e){this.error=e,delete this.callbacks;var t=this.errbacks;delete this.errbacks;for(var i=0;i<t.length;i++)t[i](e)},e}.apply(null,[]))||(e.exports=n)},475:function(e,t,i){var n,r;n=[i(577)],void 0===(r=function(e){var t="seq_id source type start end score strand phase attributes".split(" ");return{parse_feature:function(i){var n=e.map(i.split("\t"),function(e){return"."==e?null:e});n[0]=this.unescape(n[0]),n[1]=this.unescape(n[1]),n[8]=this.parse_attributes(n[8]);for(var r={},o=0;o<t.length;o++)r[t[o]]="."==n[o]?null:n[o];return 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i.get.field_accessors={},i.set.field_accessors={},dojo.forEach(this.classes,function(e,i){dojo.forEach(e.attributes||[],function(e,n){t[e]=t[e]||[],t[e][i]=n+1,e=e.toLowerCase(),t[e]=t[e]||[],t[e][i]=n+1})}),e=dojo.map(this.classes,function(e){return e.attributes}),t)t.hasOwnProperty(n)&&(i.get.field_accessors[n]=function(){var e=t[n];return e?function(){return this[e[this[0]]]}:function(){}}(),i.set.field_accessors[n]=function(){var e=t[n];return e?function(t){return this[e[this[0]]]=t}:function(){}}());return i},e}.apply(null,[]))||(e.exports=n)},480:function(e,t,i){var n,r;n=[i(677),i(634),i(587),i(334),i(352)],void 0===(r=function(e,t,i,n,r){function o(){this.topList=[]}return 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r=[];i.forEach(n,e.hitch(this,function(e){-1!=i.indexOf(t.view.visibleTrackNames(),e)&&r.push(t.trackConfigsByName[e])})),t.publish("/jbrowse/v1/c/tracks/hide",r)}(u),function(n){var r=[];i.forEach(n,e.hitch(this,function(e){-1==i.indexOf(t.view.visibleTrackNames(),e)&&r.push(t.trackConfigsByName[e])})),t.publish("/jbrowse/v1/c/tracks/show",r),t.publish("/jbrowse/v1/n/tracks/visibleChanged")}(d);var f=o+":"+a+".."+s;window.JBrowse.navigateTo(f)}else window.open(n,"_self")}},u=0,d=n.length;u<d;u++){var f=new RegExp(".*&loc=([^:%]*)[:%3A]*([0-9]*)\\.\\.([0-9]*).*").exec(n[u].Link),g=/([^\/]*)(.*\/)?(.*)?$/.exec(n[u].Genome);console.log(g);var p=(g=g.filter(function(e){return 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RegExp(".*(\\?data=.*)"),c=s.exec(a),h=l.exec(i);console.log("Parent:"+c+"\nframe:"+h),i=c[1]+h[1]}var d=new function(e,t,i,n){this.Id=e,this.Genome=t,this.Link=i,this.Desc=n}(o,t,i,e),f=[];n&&(f=n),f.push(d),localStorage.setItem("JBrowseMarks",JSON.stringify(f)),u(),r.markBox.reset()}}).placeAt(a);var d=n.create("div",{className:"control-div"},o);return new s({showLabel:!0,label:"Clear Selections",onClick:function(){var e=JSON.parse(localStorage.getItem("JBrowseMarks")),t=r.selectedRows;for(var i in t)for(var n in e)dojo.query(".match-header"+e[n].Id).style("color","black");r.selectedRows=[]}}).placeAt(d),new s({iconClass:"dijitIconDelete",showLabel:!0,label:"Remove Selected Bookmarks",onClick:function(){var e=JSON.parse(localStorage.getItem("JBrowseMarks")),t=r.selectedRows;for(var i in t)for(var n in e)if(console.log(e[n].Id+"::"+t[i]),e[n].Id==t[i]){e.splice(n,1);break}r.selectedRows=[],localStorage.removeItem("JBrowseMarks"),localStorage.setItem("JBrowseMarks",JSON.stringify(e)),dojo.style(h,{display:"none"});var o=dojo.query(".match-div-header");o.length>0&&o.forEach(dojo.destroy),u()}}).placeAt(d),new s({iconClass:"dijitIconFolderOpen",showLabel:!0,label:"Open Selected Bookmarks",onClick:function(){var e=JSON.parse(localStorage.getItem("JBrowseMarks")),t=r.selectedRows;for(var i in t)for(var n in e)e[n].Id==t[i]&&window.open(e[n].Link,"_blank"),console.log(e[n].Id+":::"+t[i])}}).placeAt(d),new s({iconClass:"dijitIconDelete",showLabel:!0,label:"Remove All Bookmarks",onClick:function(){dojo.style(h,{display:"none"}),dojo.style(c,{display:"block"});var e=dojo.query(".match-div-header");e.length>0&&e.forEach(dojo.destroy),localStorage.removeItem("JBrowseMarks"),r.selectedRows=[]}}).placeAt(d),console.log(this),o},_fillActionBar:function(e){var t=this;new s({label:"Close",onClick:function(){t.callback(!1),t.hide()}}).placeAt(e)},show:function(e,t){console.log("log:"+window.location.pathname),this.browser=e,this.callback=t||function(){},this.set("title","Quick Bookmarks"),this.set("content",this._dialogContent()),this.inherited(arguments),a.focus(this.closeButtonNode)}})}.apply(null,n))||(e.exports=r)},491:function(e,t,i){var n,r;n=[i(575),i(577),i(579),i(360)],void 0===(r=function(e,t,i,n){return e(n,{blastFeatureDetail:function(e,t,i,n){return n=n||dojo.create("div",{className:"detail feature-detail feature-detail-"+e.name.replace(/\s+/g,"_").toLowerCase(),innerHTML:""}),this._renderCoreDetails(e,t,i,n),this._renderAlignmentDetail(e,t,i,n),this._renderAdditionalTagsDetail(e,t,i,n),n},_renderAdditionalTagsDetail:function(e,n,r,o){var a=t.filter(n.tags(),function(e){return!this._isReservedTag(e)},this);a.length&&(i.create("div",{className:"additional",innerHTML:'<h2 class="sectiontitle">Attributes</h2>'},o),t.forEach(a.sort(),function(e){"Blast_sseq"!=e&&"Blast_mseq"!==e&&"Blast_qseq"!==e&&this.renderDetailField(o,e,n.get(e),n)},this))},_renderAlignmentDetail:function(e,n,r,o){if(t.filter(n.tags(),function(e){return!this._isReservedTag(e)},this).length){var a=i.create("div",{className:"additional",innerHTML:'<h2 class="sectiontitle">Alignment</h2>'},o);i.create("div",{className:"alignment_container",innerHTML:"<pre>Query: "+n.get("Blast_qseq")+"\nMatch: "+n.get("Blast_mseq")+"\nSbjct: "+n.get("Blast_sseq")+"</pre>"},a)}}})}.apply(null,n))||(e.exports=r)},492:function(e,t,i){var n=i(1324);"string"==typeof n&&(n=[[e.i,n,""]]);i(1440)(n,{hmr:!0,transform:void 0,insertInto:void 0}),n.locals&&(e.exports=n.locals)},493:function(e,t,i){var n,r;n=[i(575),i(577),i(630),i(593),i(580),i(579),i(585),i(689),i(772),i(1442),i(651),i(388)],void 0===(r=function(e,t,i,n,r,o,a,s,l,c,h,u){return e("JBrowse.View.TrackList.Simple",u,{constructor:function(e){this.browser=e.browser,this.createTrackList(e.browser.container),this.inactiveTrackNodes={},this.trackListWidget.insertNodes(!1,e.trackConfigs),this.browser.subscribe("/dnd/drop",dojo.hitch(this,function(e,t,i,n){if(n===this.trackListWidget){var r=dojo.filter(dojo.map(t,function(e){return e.track&&e.track.config}),function(e){return e});r.length&&(this.dndDrop=!0,this.browser.publish("/jbrowse/v1/v/tracks/hide",r),this.dndDrop=!1)}})),this.browser.subscribe("/jbrowse/v1/c/tracks/show",dojo.hitch(this,"setTracksActive")),this.browser.subscribe("/jbrowse/v1/c/tracks/hide",dojo.hitch(this,"setTracksInactive")),this.browser.subscribe("/jbrowse/v1/c/tracks/new",dojo.hitch(this,"addTracks")),this.browser.subscribe("/jbrowse/v1/c/tracks/replace",dojo.hitch(this,"replaceTracks")),this.browser.subscribe("/jbrowse/v1/c/tracks/delete",dojo.hitch(this,"deleteTracks"))},addTracks:function(e){this.trackListWidget.insertNodes(!1,e),this._blinkTracks(e)},replaceTracks:function(e){t.forEach(e,function(e){var t=this.inactiveTrackNodes[e.label];t&&(delete this.inactiveTrackNodes[e.label],this.trackListWidget.delItem(t.id),t.parentNode&&t.parentNode.removeChild(t),this.trackListWidget.insertNodes(!1,[e],!1,t.previousSibling))},this)},createTrackList:function(e){var t=dojo.create("div",{id:"trackPane",className:"jbrowseSimpleTrackSelector",style:{width:"12em"}},e),i=(new s({region:"left",splitter:!0},t),this.div=this.containerNode=dojo.create("div",{id:"tracksAvail",className:"container handles",style:{width:"100%",height:"100%",overflowX:"hidden",overflowY:"auto"},innerHTML:"<h2>Available Tracks</h2>"},t));return this._makeTextFilterNodes(i),this._updateTextFilterControl(),this.trackListWidget=new l(i,{accept:["track"],withHandles:!1,creator:dojo.hitch(this,function(e,t){var i=e.key||e.name||e.label,n=dojo.create("div",{className:"tracklist-label",title:i+" (drag or double-click to activate)",innerHTML:i});if("avatar"!=t){r(n,"dblclick",dojo.hitch(this,function(){this.browser.publish("/jbrowse/v1/v/tracks/show",[e])}));var o=dojo.create("div",{className:"tracklist-container"});o.appendChild(n),(n=o).id=dojo.dnd.getUniqueId(),this.inactiveTrackNodes[e.label]=n}return{node:n,data:e,type:["track"]}})}),this.trackListWidget.onMouseDown=dojo.hitch(this,"onMouseDown"),this.trackListWidget.onMouseUp=dojo.hitch(this,"onMouseUp"),r(document,"keydown",dojo.hitch(this,"onKeyDown")),i},onKeyDown:function(e){switch(e.keyCode){case n.ESCAPE:this.trackListWidget.selectNone()}},onMouseDown:function(e){var t=this.trackListWidget;!t.mouseDown&&t._legalMouseDown(e)&&(t.mouseDown=!0,t._lastX=e.pageX,t._lastY=e.pageY,this._onMouseDown(t.current,e))},_onMouseDown:function(e,t){if(e){var n=this.trackListWidget;if(t.ctrlKey||t.shiftKey||(n.simpleSelection=!0,this._isSelected(e)||(n.selectNone(),n.simpleSelection=!1)),t.shiftKey&&this.anchor){var r=0,o=n.getAllNodes();if(this._select(e),e!=this.anchor){for(;r<o.length&&o[r]!=this.anchor&&o[r]!=e;r++);for(r++;r<o.length&&o[r]!=this.anchor&&o[r]!=e;r++)this._select(o[r])}}else t.ctrlKey?this._toggle(e):this._select(e),this.anchor=e;i.stop(t)}},onMouseUp:function(e){var t=this.trackListWidget;t.mouseDown&&(t.mouseDown=!1,this._onMouseUp(e))},_onMouseUp:function(e){var t=this.trackListWidget;t.simpleSelection&&t.current&&(t.selectNone(),this._select(t.current))},_isSelected:function(e){return this.trackListWidget.selection[e.id]},_select:function(e){this.trackListWidget.selection[e.id]=1,this.trackListWidget._addItemClass(e,"Selected")},_deselect:function(e){delete this.trackListWidget.selection[e.id],this.trackListWidget._removeItemClass(e,"Selected")},_toggle:function(e){this.trackListWidget.selection[e.id]?this._deselect(e):this._select(e)},setTracksActive:function(e){this.deleteTracks(e)},deleteTracks:function(e){t.forEach(e||[],function(e){var t=this.inactiveTrackNodes[e.label];t&&(delete this.inactiveTrackNodes[e.label],t.parentNode&&t.parentNode.removeChild(t),this.trackListWidget.delItem(t.id))},this)},setTracksInactive:function(e){this.dndDrop||(this.trackListWidget.insertNodes(!1,e),this._blinkTracks(e))},_blinkTracks:function(e){this.trackListWidget.node.scrollTop=this.trackListWidget.node.scrollHeight,t.forEach(e,function(e){var t=this.inactiveTrackNodes[e.label].firstChild;t&&dojo.animateProperty({node:t,duration:400,properties:{backgroundColor:{start:"#DEDEDE",end:"#FFDE2B"}},easing:c.sine,repeat:2,onEnd:function(){t.style.backgroundColor=null}}).play()},this)},show:function(){},hide:function(){},toggle:function(){}})}.apply(null,n))||(e.exports=r)},494:function(e,t,i){var n,r;n=[i(575),i(577),i(576),i(579),i(590),i(580),i(573),i(1035),i(689),i(334),i(388)],void 0===(r=function(e,t,i,n,r,o,a,s,l,c,h){return e("JBrowse.View.TrackList.Hierarchical",[l,h],{region:"left",splitter:!0,style:"width: 25%",id:"hierarchicalTrackPane",baseClass:"jbrowseHierarchicalTrackSelector",categoryFacet:"category",constructor:function(e){this.categories={},this.config=i.mixin({sortHierarchical:!0},e),this._loadState()},postCreate:function(){this.placeAt(this.browser.container),this.browser.subscribe("/jbrowse/v1/c/tracks/show",i.hitch(this,"setTracksActive")),this.browser.subscribe("/jbrowse/v1/c/tracks/hide",i.hitch(this,"setTracksInactive")),this.browser.subscribe("/jbrowse/v1/c/tracks/new",i.hitch(this,"addTracks")),this.browser.subscribe("/jbrowse/v1/c/tracks/replace",i.hitch(this,"replaceTracks")),this.browser.subscribe("/jbrowse/v1/c/tracks/delete",i.hitch(this,"deleteTracks"))},buildRendering:function(){this.inherited("buildRendering",arguments);var e=n.create("div",{className:"header"},this.containerNode);n.create("h2",{className:"title",innerHTML:"Available Tracks"},e),this._makeTextFilterNodes(n.create("div",{className:"textfilterContainer"},e)),this._updateTextFilterControl()},induceCategoryOrder:function(e,t){var i=t.split(",").map(function(e){return e.trim()}).map(function(e){return e.split("/").map(function(e){return e.trim()}).join("/")});e.forEach(function(e){e.category&&(e.cat=e.category.trim().split("/").map(function(e){return e.trim()}).join("/"))});var n=e.filter(function(e){return-1===i.indexOf(e.cat)}),r=e.filter(function(e){return-1!==i.indexOf(e.cat)});return r.sort(function(e,t){return i.indexOf(e.cat)-i.indexOf(t.cat)}),e.forEach(function(e){return delete e.cat}),r.concat(n)},startup:function(){var e=this;this.inherited("startup",arguments);var t,n=[],r=this.get("categoryFacet");this.config.sortHierarchical&&(t=[{attribute:r.toLowerCase()},{attribute:"key"},{attribute:"label"}]);for(var o=(this.get("collapsedCategories")||"").split(",").map(function(e){return e.trim()}).map(function(e){return e.split("/").map(function(e){return e.trim()}).join("/")}),a=0;a<o.length;a++)i.setObject("collapsed."+o[a],!0,this.state);this._saveState(),this.get("trackMetaData").fetch({onItem:function(e){e.conf&&n.push(e)},onComplete:function(){e.categories.Uncategorized={pane:new l({className:"uncategorized"}).placeAt(e.containerNode),tracks:{},categories:{}},e.config.categoryOrder&&(n=e.induceCategoryOrder(n,e.config.categoryOrder)),e.addTracks(n,!0),e.categories.Uncategorized.pane.containerNode.children.length||(e.categories.Uncategorized.pane.domNode.style.display="none")},sort:t})},addTracks:function(e,r){this.pane=this;var a=this;t.forEach(e,function(e){var t=e.conf||e,l=this.get("categoryFacet"),h=function e(t,n,o){var l=n.shift(),c=(o=o.concat(l)).join("/"),h=t.categories[l]||(t.categories[l]=function(){var e=i.getObject("collapsed."+c,!1,a.state),n=new s({title:'<span class="categoryName">'+l+'</span> <span class="trackCount">0</span>',open:!e});return n.watch("open",function(e,t,n){i.setObject("collapsed."+c,!n,a.state),a._saveState()}),t.pane.addChild(n,r?void 0:1),{parent:t,pane:n,categories:{},tracks:{}}}.call(a));return n.length?e(h,n,o):h}(this,(t.metadata&&t.metadata[l]||t[l]||e[l]||"Uncategorized").split(/\s*\/\s*/),[]);h.pane.domNode.style.display="block";var u=n.create("label",{className:"tracklist-label shown",title:c.escapeHTML(t.shortDescription||e.shortDescription||(1===t.description?void 0:t.description)||e.description||t.Description||e.Description||t.metadata&&(t.metadata.shortDescription||t.metadata.description||t.metadata.Description)||e.key||t.key||t.label)},h.pane.containerNode),d={type:"checkbox",className:"check"};"function"==typeof a.extendCheckbox&&(d=a.extendCheckbox(d,t));var f,g=n.create("input",d,u),p=t.label;this.own(f=o(g,"click",function(){a.itemClick(this,t)})),n.create("span",{className:"key",innerHTML:t.key||t.label},u),h.tracks[p]={checkbox:g,checkListener:f,labelNode:u}},this),this._updateAllTitles()},itemClick:function(e,t){this.browser.publish("/jbrowse/v1/v/tracks/"+(e.checked?"show":"hide"),[t])},_loadState:function(){this.state={};try{this.state=a.parse(localStorage.getItem("JBrowse-Hierarchical-Track-Selector")||"{}")}catch(e){}return this.state},_saveState:function(e){try{localStorage.setItem("JBrowse-Hierarchical-Track-Selector",a.stringify(this.state))}catch(e){}},_updateAllTitles:function(e){var t=e||this;for(var i in t.categories)this._updateTitle(t.categories[i]),this._updateAllTitles(t.categories[i])},_updateTitle:function(e){e.pane.set("title",e.pane.get("title").replace(/>\s*\d+\s*</,">"+r("label.shown",e.pane.containerNode).length+"<"))},_updateTitles:function(e){this._updateTitle(e),e.parent&&this._updateTitles(e.parent)},_findTrack:function(e,t,i){var n=i||this;for(var r in n.categories){var o=n.categories[r];if(o.tracks[e])return t(o.tracks[e],o),!0;if(this._findTrack(e,t,o))return!0}return!1},replaceTracks:function(e){},setTracksActive:function(e){t.forEach(e,function(e){this._findTrack(e.label,function(e,t){e.checkbox.checked=!0})},this)},deleteTracks:function(e){t.forEach(e,function(e){this._findTrack(e.label,function(t,i){t.labelNode.parentNode.removeChild(t.labelNode),t.checkListener.remove(),delete i.tracks[e.label]})},this)},setTracksInactive:function(e){t.forEach(e,function(e){this._findTrack(e.label,function(e,t){e.checkbox.checked=!1})},this)},_textFilter:function(){this.inherited(arguments),this._updateAllTitles()},show:function(){},hide:function(){},toggle:function(){}})}.apply(null,n))||(e.exports=r)},495:function(e,t,i){var n,r;n=[i(359)],void 0===(r=function(e){return e}.apply(null,n))||(e.exports=r)},496:function(e,t,i){var n,r;n=[i(575),i(577),i(359),i(334),i(373),i(462)],void 0===(r=function(e,t,i,n,r,o){return n.dojof,e([i,r],{constructor:function(){delete this.config.bicolor_pivot,delete this.config.scale,delete this.config.align;var e=this;this.store=new o({store:this.store,config:{mismatchScale:this.config.mismatchScale,indicatorProp:this.config.indicatorProp,indicatorDepth:this.config.indicatorDepth},browser:this.browser,filter:function(t){return e.filterFeature(t)}})},_defaultConfig:function(){return n.deepUpdate(dojo.clone(this.inherited(arguments)),{autoscale:"local",min_score:0,mismatchScale:.1,indicatorProp:.5,indicatorDepth:1,hideDuplicateReads:!0,logScaleOption:!1,hideQCFailingReads:!0,hideSecondary:!0,hideSupplementary:!0,hideMissingMatepairs:!1,hideImproperPairs:!1,hideUnmapped:!0})},_drawFeatures:function(e,t,i,r,o,a,s,l){var c=this,h=o.getContext("2d"),u=o.height,d=n.getResolution(h,this.browser.config.highResolutionMode),f=dojo.hitch(this,function(e){return u*(1-l.normalize(e))/d}),g=f(l.origin),p=dojo.create("canvas",{height:20,width:o.width,style:{cursor:"default",width:"100%",height:"20px"},innerHTML:"Your web browser cannot display this type of track.",className:"SNP-indicator-track"},r.domNode),b=p.getContext("2d");if(d=n.getResolution(b,this.browser.config.highResolutionMode),"disabled"!=this.browser.config.highResolutionMode&&1!=d){var m=p.width,v=p.height;p.width=m*d,p.height=v*d,p.style.height=v+"px",b.scale(d,d)}var w=this.config.style.neg_color,y=this.config.style.clip_marker_color,k=this.config.style.bg_color,_=this.config.disable_clip_markers,x=function(e,t,i,n){t<=u&&(h.fillStyle=c.colorForBase(e),t<=g?(c._fillRectMod(h,n.l,t,n.w,i),!_&&t<0&&(h.fillStyle=y||w,c._fillRectMod(h,n.l,0,n.w,2))):(c._fillRectMod(h,n.l,g,n.w,i),!_&&t>=u&&(h.fillStyle=y||c.colorForBase(e),c._fillRectMod(h,n.l,u-3,n.w,2))))};dojo.forEach(a,function(e,t){var i=s[t],n=e.get("score");k&&(h.fillStyle=k,c._fillRectMod(h,i.l,0,i.w,u)),x("reference",f(n.total()),g-f(n.get("reference"))+1,i)});var S=this.config.indicatorProp,j=this.config.indicatorDepth;dojo.forEach(a,function(e,t){var i=s[t],n=e.get("score"),r=n.total();n.forEach(function(e,t){!{reference:!0,skip:!0,deletion:!0}[t]&&e>=S*r&&e>=j&&(b.save(),"disabled"!=c.browser.config.highResolutionMode&&b.scale(d,1),b.beginPath(),b.arc(i.l+.5*i.w,.4*p.height/d,.2*p.height/d,1.75*Math.PI,1.25*Math.PI,!1),b.lineTo(i.l+.5*i.w,0),b.closePath(),b.fillStyle=c.colorForBase(t),b.fill(),b.lineWidth=1,b.strokeStyle="black",b.stroke(),"disabled"!=c.browser.config.highResolutionMode&&b.restore())}),r-=n.get("reference"),n.forEach(function(e,t){"reference"!=t&&(x(t,f(r),g-f(e)+1,i),r-=e)})},this)},_draw:function(e,t,i,n,r,o,a,s,l,c){this._preDraw(e,t,i,n,r,o,a,s),this._drawFeatures(e,t,i,n,r,o,a,s),c&&this._maskBySpans(e,t,r,c),this._postDraw(e,t,i,n,r,o,a,s)},_maskBySpans:function(e,t,i,n){var r=i.getContext("2d"),o=i.height,a=this.config.style.masked_transparancy||.17;this.config.style.masked_transparancy=a;var s=dojo.create("canvas",{height:o,width:i.width}),l=s.getContext("2d");for(var c in n)if(n.hasOwnProperty(c)){var h=Math.round((n[c].end-n[c].start)*e),u=Math.round((n[c].start-t)*e);if(u+h>=i.width&&(h=i.width-u),0==h)continue;l.drawImage(i,u,0,h,o,u,0,h,o),r.globalAlpha=a,r.clearRect(u,0,h,o),r.drawImage(s,u,0,h,o,u,0,h,o),r.globalAlpha=1}},_showPixelValue:function(e,t){if(!t||!t.score)return!1;function i(e){return parseFloat(e).toPrecision(6).replace(/0+$/,"").replace(/\.$/,"")}if((t=t.score).snpsCounted){var n=t.total(),r="<table>";return t.forEach(function(e,t){var o="";e.forEach&&(o=[],e.forEach(function(e,t){o.push(i(e)+" "+t)}),(o=o.join(", "))&&(o="("+o+")")),r+="<tr><td>"+(t={"*":"del",reference:"Ref",skip:"Skip/intron"}[t]||t)+'</td><td class="count">'+i(e)+'</td><td class="pct">'+function(e){return"number"!=typeof(e=Math.round(e/n*100))||isNaN(e)?"":e+"%"}(e)+'</td><td class="subdist">'+o+"</td></tr>"}),r+='<tr class="total"><td>Total</td><td class="count">'+i(n)+'</td><td class="pct">&nbsp;</td><td class="subdist">&nbsp;</td></tr>',e.innerHTML=r+"</table>",!0}return e.innerHTML='<table><tr><td>Total</td><td class="count">'+i(t)+"</td></tr></table>",!0},_trackMenuOptions:function(){var e=this,t=[];return t.push({label:"View alignments",onClick:function(t){e.config.type="JBrowse/View/Track/Alignments2",e.config._oldSnpCoverageHeight=e.config.style.height,e.config.style.height=e.config._oldAlignmentsHeight,e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),Promise.all([this.inherited(arguments),this._alignmentsFilterTrackMenuOptions(),t]).then(function(e){var t=e.shift();return e.unshift({type:"dijit/MenuSeparator"}),t.concat.apply(t,e)})}})}.apply(null,n))||(e.exports=r)},497:function(e,t,i){var n,r;n=[i(575),i(577),i(576),i(579),i(585),i(590),i(348),i(353),i(392),i(334)],void 0===(r=function(e,t,i,n,r,o,a,s,l,c){return e([a,s,l],{constructor:function(e){this._charMeasurements={},this._codonTable=this.generateCodonTable(i.mixin(this.defaultCodonTable,this.config.codonTable)),this._codonStarts=this.config.codonStarts||this.defaultStarts,this._codonStops=this.config.codonStops||this.defaultStops},_defaultConfig:function(){return{maxExportSpan:5e5,showForwardStrand:!0,showReverseStrand:!0,showTranslation:!0,showColor:!0,seqType:"dna",proteinColorScheme:"taylor"}},_exportFormats:function(){return[{name:"FASTA",label:"FASTA",fileExt:"fasta"}]},endZoom:function(e,t){this.clear()},setViewInfo:function(e,t,i,n,r,o,a){this.inherited(arguments),this.show()},nbsp:String.fromCharCode(160),fillBlock:function(e){var t=e.blockIndex,i=e.block,r=e.leftBase,o=e.rightBase,a=e.scale,s=r-2,l=o+2,c=this,h=dojo.create("div",{className:"sequence_blur",innerHTML:'<span class="loading">Loading</span>'},i.domNode);this.heightUpdate(h.offsetHeight+2*h.offsetTop,t),a>=1.3?this.store.getReferenceSequence({ref:this.refSeq.name,start:s,end:l},function(r){""==r.trim()?h.innerHTML='<span class="zoom">No sequence available</span>':(n.empty(i.domNode),c._fillSequenceBlock(i,t,a,r)),e.finishCallback()},function(t){e.errorCallback?e.errorCallback(t):(console.error(t),e.finishCallback())}):(h.innerHTML='<span class="zoom">Zoom in to see sequence</span>',e.finishCallback())},_fillSequenceBlock:function(e,i,o,a){a=a.replace(/\s/g,this.nbsp);var s=e.startBase,l=e.endBase,h=a.substring(2,a.length-2),u=h.length,d=(a.length-2)%3,f=a.substring(0,a.length-2),g=a.substring(2);if(this.config.showForwardStrand&&this.config.showTranslation){for(var p=[],b=0;b<3;b++){var m=((s+b)%3+3)%3,v=this._renderTranslation(g,b,s,l,u,o);p[m]=v,r.add(v,"frame"+m)}for(b=2;b>=0;b--)e.domNode.appendChild(p[b])}var w,y=o>this.getCharacterMeasurements("sequence").w+4;if((this.config.showReverseStrand||this.config.showForwardStrand)&&(w=n.create("table",{className:"sequence"+(y?" big":"")+(this.config.showColor?"":" nocolor"),style:{width:"100%"}},e.domNode)),this.config.showForwardStrand&&w.appendChild(this._renderSeqTr(s,l,h,o)),this.config.showReverseStrand){var k=this._renderSeqTr(s,l,c.complement(h),o);if(k.className="revcom",w.appendChild(k),this.config.showTranslation){for(p=[],b=0;b<3;b++)m=((s+1-b)%3+3+d)%3,v=this._renderTranslation(f,b,s,l,u,o,!0),p[m]=v,r.add(v,"frame"+m);for(b=0;b<3;b++)e.domNode.appendChild(p[b])}}var _=0;t.forEach(e.domNode.childNodes,function(e){_+=e.clientHeight||e.offsetHeight}),this.heightUpdate(_,i)},_renderTranslation:function(e,t,i,r,o,a,s){for(var l=((e=s?c.revcom(e):e).length-t)%3,h=e.slice(t,e.length-l),u="",d=0;d<h.length;d+=3){var f=h.slice(d,d+3);u+=this._codonTable[f]||this.nbsp}u=s?u.split("").reverse().join(""):u;var g=s?h.split("").reverse().join(""):h,p=this.getCharacterMeasurements("aminoAcid"),b=a>p.w+4,m=100/(o/3),v=n.create("div",{className:"translatedSequence"}),w=n.create("table",{className:"translatedSequence offset"+t+(b?" big":""),style:{width:m*u.length+"%"}},v),y=n.create("tr",{},w);w.style.left=(s?100-m*(u.length+t/3):m*t/3)+"%",m=100/u.length+"%";var k=a>=p.w;for(k&&(w.className+=" big"),d=0;d<u.length;d++){var _=document.createElement("td"),x=g.slice(3*d,3*d+3);x=s?x.split("").reverse().join(""):x,_.className="aminoAcid aminoAcid_"+u.charAt(d).toLowerCase(),-1!=this._codonStarts.indexOf(x.toUpperCase())&&(_.className="aminoAcid aminoAcid_start"),-1!=this._codonStops.indexOf(x.toUpperCase())&&(_.className="aminoAcid aminoAcid_stop"),_.style.width=m,k&&(_.innerHTML=u.charAt(d)),y.appendChild(_)}return v},_renderSeqTr:function(e,t,i,n){var r=this.getCharacterMeasurements("sequence"),o=document.createElement("tr"),a=100/(t-e)+"%",s=n>=r.w,l="base";"protein"===this.config.seqType&&(l+=" aaScheme_"+this.config.proteinColorScheme);for(var c=0;c<i.length;c++){var h=document.createElement("td");h.className=l+" base_"+i.charAt(c).toLowerCase(),h.style.width=a,s&&(h.innerHTML=i.charAt(c)),o.appendChild(h)}return o},startZoom:function(){o(".base",this.div).empty()},getCharacterMeasurements:function(e){return this._charMeasurements[e]||(this._charMeasurements[e]=this._measureSequenceCharacterSize(this.div,e))},_measureSequenceCharacterSize:function(e,t){var i=document.createElement("td");i.className=t,i.style.visibility="hidden";var n="12345678901234567890123456789012345678901234567890";i.appendChild(document.createTextNode(n)),e.appendChild(i);var r={w:i.clientWidth/n.length+1,h:i.clientHeight};return e.removeChild(i),r},_trackMenuOptions:function(){var e=this,t=this.inherited(arguments);return t.push({type:"dijit/MenuSeparator"}),t.push.apply(t,[{label:"Show forward strand",type:"dijit/CheckedMenuItem",checked:!!this.config.showForwardStrand,onClick:function(t){e.config.showForwardStrand=this.checked,e.changed()}},{label:"Show reverse strand",type:"dijit/CheckedMenuItem",checked:!!this.config.showReverseStrand,onClick:function(t){e.config.showReverseStrand=this.checked,e.changed()}},{label:"Show translation",type:"dijit/CheckedMenuItem",checked:!!this.config.showTranslation,onClick:function(t){e.config.showTranslation=this.checked,e.changed()}},{label:"Show color",type:"dijit/CheckedMenuItem",checked:!!this.config.showColor,onClick:function(t){e.config.showColor=this.checked,e.changed()}}]),t}})}.apply(null,n))||(e.exports=r)},498:function(e,t,i){var n,r;n=[i(575),i(634),i(376),i(395)],void 0===(r=function(e,t,i,n){return e([i,n],{_trackMenuOptions:function(){return t([this.inherited(arguments),this._variantsFilterTrackMenuOptions()]).then(function(e){var t=e.shift();return e.unshift({type:"dijit/MenuSeparator"}),t.concat.apply(t,e)})}})}.apply(null,n))||(e.exports=r)},499:function(e,t,i){var n,r;n=[i(575),i(464),i(354)],void 0===(r=function(e,t,i){return e([t,i],{constructor:function(){},updateStaticElements:function(e){this.inherited(arguments),this.updateYScaleFromViewDimensions(e)},makeImageLoadHandler:function(e,t,i,n){return this.inherited(arguments,[e,t,i,dojo.hitch(this,function(){this.makeWiggleYScale(),n&&n()})])},makeWiggleYScale:function(){var e=this;this.store.getGlobalStats(function(t){e.yscale||e.makeYScale({min:t.scoreMin,max:t.scoreMax})})}})}.apply(null,n))||(e.exports=r)},500:function(e,t,i){var n,r;n=[i(575),i(577),i(359),i(334),i(465)],void 0===(r=function(e,t,i,n,r){return e(i,{constructor:function(e){this.store=new r({store:this.store,browser:this.browser})},_defaultConfig:function(){return n.deepUpdate(dojo.clone(this.inherited(arguments)),{autoscale:"local"})}})}.apply(null,n))||(e.exports=r)},501:function(e,t,i){var n,r;n=[i(575),i(576),i(580),i(579),i(585),i(587),i(634),i(619),i(466),i(647),i(348),i(361),i(822),i(772),i(823),i(334),i(367),i(353)],void 0===(r=function(e,t,i,n,r,o,a,s,l,c,h,u,d,f,g,p,b,m){return e([h,m],{constructor:function(e){this.trackClasses={set:{resultsTypes:[{name:"HTMLFeatures",path:"JBrowse/View/Track/HTMLFeatures"}],store:"JBrowse/Store/SeqFeature/Combination",allowedOps:["&","U","X","S"],defaultOp:"&"},quantitative:{resultsTypes:[{name:"XYPlot",path:"JBrowse/View/Track/Wiggle/XYPlot"},{name:"Density",path:"JBrowse/View/Track/Wiggle/Density"}],store:"JBrowse/Store/SeqFeature/QuantitativeCombination",allowedOps:["+","-","*","/"],defaultOp:"+"},mask:{resultsTypes:[{name:"XYPlot",path:"JBrowse/View/Track/Wiggle/XYPlot"},{name:"Density",path:"JBrowse/View/Track/Wiggle/Density"}],store:"JBrowse/Store/SeqFeature/Mask",allowedOps:["M","N"],defaultOp:"M"},BAM:{resultsTypes:[{name:"Detail",path:"JBrowse/View/Track/Alignments2"},{name:"Summary",path:"JBrowse/View/Track/SNPCoverage"}],store:"JBrowse/Store/SeqFeature/BAMCombination",allowedOps:["U"],defaultOp:"U"}},this.errorCallback=dojo.hitch(this,function(e){this._handleError(e,{})}),this.inWords={"+":"addition","-":"subtraction","*":"multiplication","/":"division","&":"intersection",U:"union",X:"XOR",S:"set subtraction",M:"regular mask",N:"inverse mask","0000":"combine without masking","0020":"use new track as mask","0002":"use old track as mask",1111:"merge tracks",1001:"add new track to old track's displayed data",1010:"add new track to old track's mask","0101":"add old track to new track's displayed data","0110":"add old track to new track's mask"},this.config.storeToKey||(this.config.storeToKey={}),this.supportedBy={"JBrowse/View/Track/HTMLFeatures":"set","JBrowse/View/Track/HTMLVariants":"set","JBrowse/View/Track/CanvasFeatures":"set","JBrowse/View/Track/CanvasVariants":"set",CanvasFeatures:"set",HTMLFeatures:"set",HTMLVariants:"set",CanvasVariants:"set","NeatCanvasFeatures/View/Track/NeatFeatures":"set","NeatHTMLFeatures/View/Track/NeatFeatures":"set","JBrowse/View/Track/Alignments2":"BAM","JBrowse/View/Track/SNPCoverage":"BAM","JBrowse/Store/BigWig":"quantitative","JBrowse/Store/SeqFeature/BigWig":"quantitative","JBrowse/Store/SeqFeature/BAM":"BAM","JBrowse/Store/SeqFeature/BAMCombination":"BAM","JBrowse/Store/SeqFeature/Combination":"set","JBrowse/Store/SeqFeature/QuantitativeCombination":"quantitative","JBrowse/Store/SeqFeature/Mask":"mask"},this.loaded=!0,this.divClass=e.divClass||"combination",this.reinitialize(),this.currentDndSource=void 0,this.sourceWasCopyOnly=void 0,this.onlyRefreshOuter=!1,this.heightResults=0,this.height=e.height||0,this.lastDialogDone=[!0]},setViewInfo:function(e,t,i,n,o,a,s){this.inherited(arguments),r.add(this.div,"combination_track empty"),this.scale=s,this.dnd=new f(this.div,{accept:["track"],isSource:!1,withHandles:!0,creator:dojo.hitch(this,function(e,t){var i=e;return e.resultsTrack&&((i=e.resultsTrack).storeToKey=e.storeToKey),{data:i,type:["track"],node:this.addTrack(i)}})}),this._attachDndEvents(),this.config.resultsTrack&&(this.reloadStoreNames=!0,this.dnd.insertNodes(!1,[this.config.resultsTrack]))},_attachDndEvents:function(){var e=this;i(e.dnd,"DndStart",function(t,i,n){e.currentDndSource=t,e.sourceWasCopyOnly=t.copyOnly}),i(e.dnd,"DraggingOver",function(){e.currentDndSource&&(e.currentDndSource.copyOnly=!0),this.currentlyOver=!0});var t=["DraggingOut","DndDrop","DndCancel"];for(var n in t)i(e.dnd,t[n],function(){e.currentDndSource&&(e.currentDndSource.copyOnly=e.sourceWasCopyOnly),this.currentlyOver=!1});dojo.subscribe("/dnd/drop/before",function(t,i,n,r){r==e.dnd&&i[0]&&(e.dnd.current=null)}),i(e.dnd,"OutEvent",function(){g.manager().overSource(e.genomeView.trackDndWidget)}),i(e.dnd,"DndSourceOver",function(e){e!=this&&this.currentlyOver&&g.manager().overSource(this)});var r=this.dnd.checkAcceptance;this.dnd.checkAcceptance=function(t,i){for(var n=r.call(e.dnd,t,i),o=0;n&&i[o];o++){var a=t.getItem(i[o].id).data;n=n&&(a.resultsTrack||e.supportedBy[a.storeClass]||e.supportedBy[a.type])}return n}},reinitialize:function(){this.dnd&&this.dnd.selectAll().deleteSelectedNodes(),this.config.noExport=!0,this.exportFormats=[],this.resultsDiv=void 0,this.resultsTrack=void 0,this.storeType=void 0,this.oldType=void 0,this.classIndex={},this.storeToShow=0,this.displayStore=void 0,this.maskStore=void 0,this.store=void 0,this.opTree=void 0},addTrack:function(e){return e&&e.key&&e.store&&(this.config.storeToKey[e.store]=e.key),e&&e.storeToKey&&t.mixin(this.config.storeToKey,e.storeToKey),this.resultsDiv||(this.resultsDiv=n.create("div"),this.resultsDiv.className="track",this.resultsDiv.id=this.name+"_resultsDiv",r.remove(this.div,"empty")),this._addTrackStore(e),this.resultsDiv},_addTrackStore:function(e){var t=e.store,i=this;(function(){var e=new o;return i.browser.getStore(t,function(i){i?e.resolve(i,!0):e.reject("store "+t+" not found",!0)}),e.promise})().then(function(t){i.runDialog(e,t)})},runDialog:function(e,t){if(void 0===this.storeType){if(this.currType=this.supportedBy[e.storeClass]||this.supportedBy[e.type],this.storeType=this.currType,this.storeClass=this.trackClasses[this.currType].store,t.isCombinationStore&&!t.opTree&&this.config.opTree)return void this.loadTree(this.config.opTree).then(dojo.hitch(this,function(i){this.opTree=i,this.displayType=this.config.displayType,null==this.getClassIndex(this.displayType||this.storeType)&&this.setTrackClass(e.type,this.displayType||this.storeType),this._adjustStores(t,this.oldType,this.currType,this.config.store,this.config.maskStore,this.config.displayStore)}));var i=t.isCombinationStore?t.opTree.clone():new u({Value:t,leaf:!0});return this.displayType="mask"==this.currType?this.supportedBy[t.stores.display.config.type]:void 0,null==this.getClassIndex(this.displayType||this.storeType)&&this.setTrackClass(e.type,this.displayType||this.storeType),this.opTree=i,this.reloadStoreNames?(this.reloadStoreNames=!1,void this._adjustStores(t,this.oldType,this.currType,this.config.store,this.config.maskStore,this.config.displayStore)):void this._adjustStores(t,this.oldType,this.currType)}var n=new o;this.lastDialogDone.push(n),s(this.lastDialogDone.shift(),dojo.hitch(this,function(){this.preferencesDialog&&this.preferencesDialog.destroyRecursive(),this.currType=this.supportedBy[e.storeClass]||this.supportedBy[e.type],this.oldType=this.storeType,this.storeClass=this.trackClasses[this.currType].store,this.preferencesDialog=new l({trackConfig:e,store:t,track:this}),this.preferencesDialog.run(dojo.hitch(this,function(t,i,r){this.opTree=t,this.displayType=r,this.storeType="mask"==this.oldType||"M"==this.opTree.get()||"N"==this.opTree.get()?"mask":this.currType,null==this.getClassIndex(this.displayType||this.storeType)&&this.setTrackClass(e.type,this.displayType||this.storeType),this._adjustStores(i,this.oldType,this.currType),n.resolve(!0)}),dojo.hitch(this,function(){n.resolve(!0)}))}))},_adjustStores:function(e,t,i,n,r,s){var l=new o;if("mask"==t)this.maskStore.reload(this.opTree.leftChild),this.displayStore.reload(this.opTree.rightChild),this.store.reload(this.opTree,this.maskStore,this.displayStore),l.resolve(!0);else if("mask"==i||"M"==this.opTree.get()||"N"==this.opTree.get()){var c=this._createStore("set",r);c.then(dojo.hitch(this,function(e){this.maskStore=e,this.maskStore.reload(this.opTree.leftChild)}));var h=this._createStore(this.displayType,s);h.then(dojo.hitch(this,function(e){this.displayStore=e,this.displayStore.reload(this.opTree.rightChild)})),this.store=void 0,l=a([c,h])}else l.resolve(!0);l.then(dojo.hitch(this,function(){this.createStore(n)}))},createStore:function(e){var t=new o,i=this;this.store?t.resolve(this.store,!0):t=this._createStore(void 0,e),t.then(function(e){i.store=e,i.store.reload(i.opTree,i.maskStore,i.displayStore),i.renderResultsTrack()})},_createStore:function(e,t){var i=new o;if(!t){var n=this._storeConfig(e);t=this.browser.addStoreConfig(void 0,n),n.name=t}return this.browser.getStore(t,function(e){i.resolve(e,!0)}),i.promise},_storeConfig:function(e){e||(e=this.storeType);var t=this.trackClasses[e].store;this.config.storeClass=t;var i=this.trackClasses[e].defaultOp;return{browser:this.browser,refSeq:this.browser.refSeq.name,type:t,op:i}},_visible:function(){var e=[this.displayType||this.storeType,"set",this.displayType],t=[{store:this.store,tree:this.opTree},{store:this.maskStore,tree:this.opTree?this.opTree.leftChild:void 0},{store:this.displayStore,tree:this.opTree?this.opTree.rightChild:void 0}];for(var i in e)if(t[i].which=e[i],e[i]){var n=0==i&&"mask"==this.storeType?"mask":e[i];t[i].allowedOps=this.trackClasses[n].allowedOps,t[i].trackType=this.trackClasses[e[i]].resultsTypes[this.getClassIndex(e[i])||0].path}return"mask"!=this.storeType?t[0]:t[this.storeToShow]},renderResultsTrack:function(){if(this.resultsTrack)for(this.resultsTrack.clear(),this.resultsTrack.destroy();this.resultsDiv.firstChild;)this.resultsDiv.removeChild(this.resultsDiv.firstChild);if(this._visible().store){var e,t=this._visible().trackType,i=this,n=this._resultsTrackConfig(t);t=n.type,dojo.global.require([t],function(t){(e=t)&&(i.resultsTrack=new e({config:n,browser:i.browser,changeCallback:i._changedCallback,refSeq:i.refSeq,store:i._visible().store,trackPadding:0}),i.resultsTrackMenuOptions=i.resultsTrack._trackMenuOptions,i.resultsTrack._trackMenuOptions=function(){return[]},i.resultsTrack.setViewInfo(i.genomeView,function(e){i.resultsDiv.style.height=e+"px",i.heightResults=e,i.height=e,i.onlyRefreshOuter=!0,i.refresh(),i.onlyRefreshOuter=!1,i.heightUpdate(i.height),i.div.style.height=i.height+"px"},i.numBlocks,i.resultsDiv,i.widthPct,i.widthPx,i.scale),i.config.opTree=i.flatten(i.opTree),i.config.store=i.store.name,i.config.maskStore=i.maskStore?i.maskStore.name:void 0,i.config.displayStore=i.displayStore?i.displayStore.name:void 0,i._visible().store==i.store&&(i.config.resultsTrack=i.resultsTrack.config,i.config.displayType=i.displayType,i.browser.replaceTracks([i.config]),"function"==typeof i.resultsTrack._exportFormats?(i.config.noExport=!1,i.exportFormats=i.resultsTrack._exportFormats()):i.config.noExport=!0),i.refresh())})}},_resultsTrackConfig:function(e){var t={store:this.store.name,storeClass:this.store.config.type,feature:["match"],key:"Results",label:this.name+"_results",metadata:{description:"This track was created from a combination track."},type:e,autoscale:"local"};if(this.config.resultsTrack){if((this.config.resultsTrack.storeClass==t.storeClass||this.supportedBy[this.config.resultsTrack.storeClass]==this.displayType)&&this._visible().store!=this.maskStore)return(t=this.config.resultsTrack).store=this.store.name,t.storeClass=this.store.config.type,t;t.key=this.config.resultsTrack.key,t.label=this.config.resultsTrack.label,t.metadata=this.config.resultsTrack.metadata}return t},refresh:function(e){e||(e=this),this._visible().store&&!this.onlyRefreshOuter?this._visible().store.reload(this._visible().tree,this.maskStore,this.displayStore):this.onlyRefreshOuter||(delete this.config.resultsTrack,delete this.config.opTree),this.range&&(e.clear(),e.showRange(this.range.f,this.range.l,this.range.st,this.range.b,this.range.sc,this.range.cs,this.range.ce)),this.makeTrackMenu()},clear:function(){this.inherited(arguments),this.resultsTrack&&!this.onlyRefreshOuter&&this.resultsTrack.clear()},hideAll:function(){this.inherited(arguments),this.resultsTrack&&!this.onlyRefreshOuter&&this.resultsTrack.hideAll()},hideRegion:function(e){this.inherited(arguments),this.resultsTrack&&!this.onlyRefreshOuter&&this.resultsTrack.hideRegion(e)},sizeInit:function(e,t,i){this.inherited(arguments),this.resultsTrack&&!this.onlyRefreshOuter&&this.resultsTrack.sizeInit(e,t,i)},showRange:function(e,t,i,n,r,o,l,c){if(this.range={f:e,l:t,st:i,b:n,sc:r,cs:o,ce:l},this.resultsTrack&&!this.onlyRefreshOuter){var h=!this.resultsDiv.parentNode;h&&this.div.appendChild(this.resultsDiv);var u=[],d=[this.store,this.maskStore,this.displayStore];for(var f in d)if(d[f]&&"function"==typeof d[f].loadRegion){var g=i,p=i+(t+1-e)*n,b=d[f].loadRegion({ref:this.refSeq.name,start:g,end:p});u.push(b),b.then(function(){},this.errorCallback)}s(a(u),dojo.hitch(this,function(a){a.length&&-1!=a.indexOf(this._visible().store)&&this.resultsTrack.clear(),this.resultsTrack.showRange(e,t,i,n,r,o,l,c)}),this.errorCallback),h&&this.div.removeChild(this.resultsDiv)}this.inherited(arguments),this.heightUpdate(this.height),this.div.style.height=this.height+"px"},moveBlocks:function(e){this.inherited(arguments),this.resultsTrack&&this.resultsTrack.moveBlocks(e)},fillBlock:function(e){var t=e.blockIndex,i=e.block;e.leftBase,this.resultsTrack?this.heightUpdate(this.heightResults,t):this.fillMessage(t,i,"Drag tracks here to combine them."),e.finishCallback()},endZoom:function(e,t){this.clear(),this.resultsTrack&&this.resultsTrack.endZoom()},updateStaticElements:function(e){this.inherited(arguments),this.resultsTrack&&this.resultsTrack.updateStaticElements(e)},setClassIndex:function(e,t){t||(t=this._visible().which),"mask"==t&&this.displayStore&&(t=this.supportedBy[this.displayStore.config.type]),this.classIndex[t]=e},setTrackClass:function(e,t){var i=this.trackClasses[t].resultsTypes.map(function(e){return e.path}).indexOf(e);i>=0&&this.setClassIndex(i,t)},getClassIndex:function(e){return"mask"==e&&this.displayStore&&(e=this.supportedBy[this.displayStore.config.type]),this.classIndex[e]},_trackMenuOptions:function(){var e=(this.resultsTrackMenuOptions||function(){}).call(this.resultsTrack);e=e||[];for(var t=this.inherited(arguments),i=t.map(function(e){return e.label}),r=0;r<e.length;r++)e[r].label&&-1!=i.indexOf(e[r].label)&&e.splice(r--,1);var o=t.concat(e),a=this;if(!this.storeType)return o;if("mask"==this.storeType){var s=["masked data","mask","data only"],l=Object.keys(s).map(function(e){return{type:"dijit/CheckedMenuItem",checked:a.storeToShow==e,label:s[e],title:"View "+s[e],action:function(){a.storeToShow=e,a.renderResultsTrack()}}});o.push.apply(o,[{type:"dijit/MenuSeparator"},{children:l,label:"View",title:"switch between the mask, display data and masked data for this masking track"}])}var h=this.trackClasses[this._visible().which].resultsTypes,u=Object.keys(h).map(function(e){return{type:"dijit/CheckedMenuItem",label:h[e].name,checked:a.classIndex[a._visible().which]==e,title:"Display as "+h[e].name+" track",action:function(){a.setClassIndex(e),delete a.config.resultsTrack,a.renderResultsTrack()}}});if(o.push.apply(o,[{type:"dijit/MenuSeparator"},{children:u,label:"Track display",title:"Change what type of track is being displayed"}]),this.opTree&&o.push.apply(o,[{label:"View formula",title:"View the formula specifying this combination track",action:function(){var e=new c({title:"View Formula"}),t=[],i=n.create("div",{innerHTML:"No operation formula defined",className:"formulaPreview"});t.push(i),a.opTree&&(i.innerHTML=a._generateTreeFormula(a.opTree)),e.set("content",t),e.show()}}]),this._visible().tree&&this._visible().tree.getLeaves().length>1){var d=this._visible().allowedOps.map(function(e){return{type:"dijit/CheckedMenuItem",checked:a._visible().tree.get()==e,label:a.inWords[e],title:"change operation of last track to "+a.inWords[e],action:function(){a.opTree&&(a._visible().tree.set(e),a.refresh())}}});o.push.apply(o,[{children:d,label:"Change last operation",title:"change the operation applied to the last track added"}])}return o},_generateTreeFormula:function(e){return e&&void 0!==e?e.isLeaf()?'<span class="leaf'+(e.highlighted?" highlighted":"")+'">'+(e.get().name?this.config.storeToKey[e.get().name]?this.config.storeToKey[e.get().name]:e.get().name:e.get())+"</span>":'<span class="tree">('+this._generateTreeFormula(e.left())+' <span class="op" title="'+this.inWords[e.get()]+'">'+e.get()+"</span> "+this._generateTreeFormula(e.right())+")</span>":'<span class="null">NULL</span>'},_exportFormats:function(){return this.exportFormats||[]},flatten:function(e){var t={leaf:e.leaf};return e.leftChild&&(t.leftChild=this.flatten(e.leftChild)),e.rightChild&&(t.rightChild=this.flatten(e.rightChild)),e.get().name?t.store=e.get().name:t.op=e.get(),t},loadTree:function(e){var t,i,n=new o,r=this;return e?(e.leftChild&&(t=this.loadTree(e.leftChild)),e.rightChild&&(i=this.loadTree(e.rightChild)),s(a([t,i]),function(t){var i=new u({leftChild:t[0],rightChild:t[1],leaf:e.leaf});e.store?(r.browser.getStore(e.store,function(e){i.set(e)}),n.resolve(i,!0)):(i.set(e.op),n.resolve(i,!0))}),n.promise):(n.resolve(void 0,!0),n.promise)}})}.apply(null,n))||(e.exports=r)},502:function(e,t,i){var n,r;n=[i(575),i(634),i(334),i(362),i(395)],void 0===(r=function(e,t,i,n,r){return e([n,r],{_defaultConfig:function(){return i.deepUpdate(dojo.clone(this.inherited(arguments)),{style:{color:"green"}})},_trackMenuOptions:function(){return t([this.inherited(arguments),this._variantsFilterTrackMenuOptions()]).then(function(e){var t=e.shift();return e.unshift({type:"dijit/MenuSeparator"}),t.concat.apply(t,e)})}})}.apply(null,n))||(e.exports=r)},503:function(e,t,i){var n,r;n=[i(575),i(577),i(680),i(369),i(334),i(362),i(373)],void 0===(r=function(e,t,i,n,r,o,a){return e([o,a],{_defaultConfig:function(){var e=r.deepUpdate(dojo.clone(this.inherited(arguments)),{glyph:"JBrowse/View/FeatureGlyph/Alignment",maxFeatureGlyphExpansion:0,maxFeatureScreenDensity:15,orientationType:"fr",hideDuplicateReads:!0,hideQCFailingReads:!0,hideSecondary:!0,hideSupplementary:!0,hideUnmapped:!0,hideUnsplicedReads:!1,hideMissingMatepairs:!1,hideImproperPairs:!1,hideForwardStrand:!1,hideReverseStrand:!1,useXS:!1,useTS:!1,useReverseTemplate:!1,useReverseTemplateOption:!0,viewAsPairs:!1,viewAsSpans:!1,maxInsertSize:5e4,readCloudLogScale:!0,showInterchromosomalArcs:!0,showLargeArcs:!0,histograms:{description:"coverage depth",binsPerBlock:200},style:{showLabels:!1}});return e.menuTemplate.push({iconClass:"dijitIconUndo",url:function(e,t){return e.browser.makeCurrentViewURL({loc:e._nextSegmentViewLoc(t,.8),highlight:t.get("next_segment_position"),tracklist:0})},action:"iframeDialog",title:"Open {next_segment_position} in a popup",disabled:function(e,t){return!t.get("next_segment_position")||t.get("paired_feature")},label:"Quick-view mate/next location"},{iconClass:"dijitIconUndo",url:function(e,t){return e.browser.makeCurrentViewURL({loc:e._nextSegmentViewLoc(t),highlight:t.get("next_segment_position")})},action:"newWindow",title:"Open {next_segment_position} in a new tab",disabled:function(e,t){return!t.get("next_segment_position")||t.get("paired_feature")},label:"Open mate/next location in new tab"}),e},_trackType:function(){},_nextSegmentViewLoc:function(e,t){var i=e.get("next_segment_position");if(i){var n=i.split(":"),o=n[0],a=parseInt(n[1]),s=this.browser.view.visibleRegion(),l=Math.round((s.end-s.start+1)*(t||1));return r.assembleLocString({start:Math.round(a-l/2),end:Math.round(a+l/2),ref:o})}},_trackMenuOptions:function(){var e=this,t=[],i={type:"dijit/Menu",label:"Track visualization types",children:[]},r={type:"dijit/Menu",label:"Coloring options",children:[]};return t.push(i),t.push(r),i.children.push({label:"View as unpaired",type:"dijit/RadioMenuItem",checked:"JBrowse/View/FeatureGlyph/Alignment"==this.config.glyph,onClick:function(t){e.config.glyph="JBrowse/View/FeatureGlyph/Alignment",e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),i.children.push({label:"View as pairs",type:"dijit/RadioMenuItem",checked:"JBrowse/View/FeatureGlyph/PairedAlignment"==this.config.glyph,onClick:function(t){e.config.glyph="JBrowse/View/FeatureGlyph/PairedAlignment",e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),i.children.push({label:"View as arcs",type:"dijit/RadioMenuItem",checked:"JBrowse/View/FeatureGlyph/PairedArc"==this.config.glyph,onClick:function(t){e.config.glyph="JBrowse/View/FeatureGlyph/PairedArc",e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),i.children.push({label:"View as read cloud",type:"dijit/RadioMenuItem",checked:"JBrowse/View/FeatureGlyph/PairedReadCloud"==this.config.glyph,onClick:function(t){e.config.glyph="JBrowse/View/FeatureGlyph/PairedReadCloud",e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),i.children.push({label:"View coverage",type:"dijit/RadioMenuItem",checked:!1,onClick:function(t){e.config.type="JBrowse/View/Track/SNPCoverage",e.config._oldAlignmentsHeight=e.config.style.height,e.config.style.height=e.config._oldSnpCoverageHeight,e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),r.children.push({label:"Color by default",type:"dijit/RadioMenuItem",checked:!!this.config.defaultColor,onClick:function(t){e.clearColorConfig(),e.config.defaultColor=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),r.children.push({label:"Color by XS tag (RNA-seq orientation)",type:"dijit/RadioMenuItem",checked:!!this.config.useXS,onClick:function(t){e.clearColorConfig(),e.config.useXS=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),r.children.push({label:"Color by TS tag (RNA-seq orientation)",type:"dijit/RadioMenuItem",checked:!!this.config.useTS,onClick:function(t){e.clearColorConfig(),e.config.useTS=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),r.children.push({label:"Color mate pair as flipped (RNA-seq orientation)",type:"dijit/RadioMenuItem",checked:!!this.config.useReverseTemplate,onClick:function(t){e.clearColorConfig(),e.config.useReverseTemplate=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),r.children.push({label:"Color by mapping quality",type:"dijit/RadioMenuItem",checked:!!this.config.colorByMAPQ,onClick:function(t){e.clearColorConfig(),e.config.colorByMAPQ=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),r.children.push({label:"Color by orientation",type:"dijit/RadioMenuItem",checked:!!this.config.colorByOrientation,onClick:function(t){e.clearColorConfig(),e.config.colorByOrientation=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),r.children.push({label:"Color by insert size",type:"dijit/RadioMenuItem",checked:!!this.config.colorBySize,onClick:function(t){e.clearColorConfig(),e.config.colorBySize=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),r.children.push({label:"Color by orientation and insert size",type:"dijit/RadioMenuItem",checked:!!this.config.colorByOrientationAndSize,onClick:function(t){e.clearColorConfig(),e.config.colorByOrientationAndSize=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}),"JBrowse/View/FeatureGlyph/PairedReadCloud"==this.config.glyph&&t.push({type:"dijit/Menu",label:"Read cloud options",children:[{label:"View log scale",type:"dijit/CheckedMenuItem",checked:!!this.config.readCloudLogScale,onClick:function(t){e.config.readCloudLogScale=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}},{label:"Set Y-scale size",onClick:function(t){new n({title:"Set read cloud Y-scale in terms of the maximum expected insert size",msg:" expected max insert size",maxHeight:1/0,height:e.config.readCloudYScaleMax||5e4,setCallback:function(t){e.config.readCloudYScaleMax=t,e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}).show()}}]}),"JBrowse/View/FeatureGlyph/PairedArc"==this.config.glyph&&t.push({type:"dijit/Menu",label:"Paired arc options",children:[{label:"Show interchromosomal",type:"dijit/CheckedMenuItem",checked:!!this.config.showInterchromosomalArcs,onClick:function(t){e.config.showInterchromosomalArcs=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}},{label:"Show large arcs",type:"dijit/CheckedMenuItem",checked:!!this.config.showLargeArcs,onClick:function(t){e.config.showLargeArcs=this.get("checked"),e.browser.publish("/jbrowse/v1/v/tracks/replace",[e.config])}}]}),t.push({type:"dijit/MenuItem",label:"Re-estimate insert size stats",onClick:function(t){e.insertSizeStats=null,e.store.cleanStatsCache(),e.redraw()}}),Promise.all([this.inherited(arguments),this._alignmentsFilterTrackMenuOptions(),t]).then(function(e){var t=e.shift();return e.unshift({type:"dijit/MenuSeparator"}),t.concat.apply(t,e)})},clearColorConfig:function(){Object.assign(this.config,{defaultColor:!1,useTS:!1,useXS:!1,useReverseTemplate:!1,colorByMAPQ:!1,colorByOrientation:!1,colorBySize:!1,colorByOrientationAndSize:!1})},_getLayout:function(){var t=this.inherited(arguments);return"JBrowse/View/FeatureGlyph/PairedReadCloud"!=this.config.glyph&&"JBrowse/View/FeatureGlyph/PairedArc"!=this.config.glyph||(t=e.safeMixin(t,{addRect:function(){return this.pTotalHeight=this.maxHeight,0}})),t},fillFeatures:function(e){var t=this,i=e.finishCallback;if(this.config.viewAsPairs||this.config.viewAsSpans||this.config.colorByOrientationAndSize||this.config.colorBySize&&!this.insertSizeStats){var n=this.getInherited(arguments),r=e.rightBase-e.leftBase,o=void 0,a=void 0;"JBrowse/View/FeatureGlyph/PairedArc"==this.config.glyph?(o=Math.max(0,e.leftBase-Math.min(Math.max(6*r,this.config.maxInsertSize),1e5)),a=e.rightBase+Math.min(Math.max(6*r,this.config.maxInsertSize),1e5)):(o=Math.max(0,e.leftBase-this.config.maxInsertSize),a=e.rightBase+this.config.maxInsertSize),new Promise(function(e,i){t.store.getFeatures({ref:t.refSeq.name,start:o,end:a,viewAsPairs:t.config.viewAsPairs,viewAsSpans:t.config.viewAsSpans,maxInsertSize:t.config.maxInsertSize},function(){},function(){t.insertSizeStats=t.insertSizeStats||t.store.getInsertSizeStats(),e()},i)}).then(function(){e.finishCallback=function(){i(),t.store.cleanFeatureCache({ref:t.refSeq.name,start:o,end:a})},n.call(t,e)},function(n){console.error(n),t._handleError(n,e),i(n)})}else this.inherited(arguments)},constructor:function(){var e=this;"JBrowse/View/FeatureGlyph/PairedArc"==this.config.glyph?(this.config.viewAsSpans=!0,this.config.viewAsPairs=!1):"JBrowse/View/FeatureGlyph/PairedAlignment"==this.config.glyph||"JBrowse/View/FeatureGlyph/PairedReadCloud"==this.config.glyph?(this.config.viewAsPairs=!0,this.config.viewAsSpans=!1):(this.config.viewAsPairs=!1,this.config.viewAsSpans=!1),this.insertSizeStats=this.config.insertSizeStats,["defaultColor","useXS","useTS","useReverseTemplate","colorByOrientation","colorBySize","colorByOrientationAndSize","colorByMAPQ"].some(function(t){return 1==e.config[t]})||(this.config.defaultColor=!0)},renderClickMap:function(){"JBrowse/View/FeatureGlyph/PairedArc"!=this.config.glyph&&"JBrowse/View/FeatureGlyph/PairedReadCloud"!=this.config.glyph&&this.inherited(arguments)}})}.apply(null,n))||(e.exports=r)},504:function(e,t,i){var n,r;n=[i(575),i(577),i(634),i(334),i(376),i(373)],void 0===(r=function(e,t,i,n,r,o){return e([r,o],{_defaultConfig:function(){return n.deepUpdate(dojo.clone(this.inherited(arguments)),{maxFeatureScreenDensity:1.5,layoutPitchY:4,hideDuplicateReads:!0,hideQCFailingReads:!0,hideSecondary:!0,hideSupplementary:!0,hideMissingMatepairs:!1,hideImproperPairs:!1,hideUnmapped:!0,hideUnsplicedReads:!1,hideForwardStrand:!1,hideReverseStrand:!1,style:{_defaultLabelScale:50,className:"alignment",arrowheadClass:"arrowhead",centerChildrenVertically:!0,showMismatches:!0,showSubfeatures:!1,showLabels:!1}})},renderFeature:function(e,t,i,n,r,o,a,s){var l=this.inherited(arguments);if(!l)return null;var c=Math.max(e.get("start"),a),h=Math.min(e.get("end"),s);return this.config.style.showMismatches&&this._drawMismatches(e,l,n,c,h),e.get("multi_segment_template")&&!e.get("multi_segment_all_aligned")&&(l.className+=" missing_mate"),l},handleSubFeatures:function(e,t,i,n,r){this.config.style.showSubfeatures&&this.inherited(arguments)},_drawMismatches:function(e,i,n,r,o){var a=o-r;if(a*n>1){var s=this._getMismatches(e),l=this.getCharacterMeasurements(),c=n>=l.w;t.forEach(s,function(t){var s=e.get("start")+t.start,l=s+t.length;if(!(l<=r||s>=o)){var h=t.base,u=Math.max(s,r),d=Math.min(l,o),f=d-u,g=dojo.create("span",{className:t.type+" base_"+h.toLowerCase(),style:{position:"absolute",left:100*(u-r)/a+"%",width:n*f>1?100*f/a+"%":"1px"}},i);if(c||(g.title=h),c&&t.length<=20)for(var p=0;p<t.length;p++){var b=s+p;b>=u&&b<=d&&dojo.create("span",{className:"base base_"+h.toLowerCase(),style:{position:"absolute",width:n+"px",left:(b-u)/f*100+"%"},innerHTML:h},g)}}},this)}},getCharacterMeasurements:function(){return this._measurements||(this._measurements=this._measureSequenceCharacterSize(this.div)),this._measurements},_measureSequenceCharacterSize:function(e){var t=dojo.create("div",{innerHTML:'<span class="base mismatch">A</span><span class="base mismatch">C</span><span class="base mismatch">T</span><span class="base mismatch">G</span><span class="base mismatch">N</span>',style:{visibility:"hidden",position:"absolute",left:"0px"}},e),i={w:t.clientWidth/5,h:t.clientHeight};return e.removeChild(t),i},_trackMenuOptions:function(){return i([this.inherited(arguments),this._alignmentsFilterTrackMenuOptions()]).then(function(e){var t=e.shift();return e.unshift({type:"dijit/MenuSeparator"}),t.concat.apply(t,e)})}})}.apply(null,n))||(e.exports=r)},505:function(e,t,i){var n,r;function o(e){if(Array.isArray(e)){for(var t=0,i=Array(e.length);t<e.length;t++)i[t]=e[t];return i}return Array.from(e)}n=[i(575),i(363)],void 0===(r=function(e,t){return e(t,{_defaultConfig:function(){return this._mergeConfigs(this.inherited(arguments),{style:{connectorColor:"#333",connectorThickness:1,borderColor:"rgba( 0, 0, 0, 0.3 )"},itemRgb:!0,height:11,thinHeight:5,subParts:function(){return!1},subSubParts:function(){return!1}})},parseItemRgb:function(e){var t=/(\d+),(\d+),(\d+)/.exec(e),i=function(e){return e.toString(16).padStart(2,"0")};if(t){var n=Number(t[1]),r=Number(t[2]),o=Number(t[3]);if(!isNaN(n)&&!isNaN(r)&&!isNaN(o)&&(n||r||o))return"#"+i(n)+i(r)+i(o)}else{var a=Number(e);if(a)return"#"+a.toString(16).padStart(6,"0")}},renderSegments:function(e,t){var i=this,n=function(e,n){if("height"===n)return i._getFeatureHeight(t.viewInfo,e);if("color"===n&&i.getConf("itemRgb",[e,i])){var r=i.parseItemRgb(e.get("itemRgb")||e.get("reserved"));if(r)return r}return i.getStyle(e,n)},r=Number(t.f.get("thick_start")),o=Number(t.f.get("thick_end")),a=Number(t.f.get("block_count"));if(a&&t.f.get("end")-t.f.get("start")>5){var s=t.f.get("block_sizes");Array.isArray(s)||(s=s.split(",").map(function(e){return Number(e)}));var l=t.f.get("chrom_starts");Array.isArray(l)||(l=l.split(",").map(function(e){return Number(e)}));for(var c=t.f.get("start"),h=0;h<a;h+=1){var u=(0|l[h])+c,d=u+(0|s[h]);this.renderSegment(e,t.viewInfo,u,d,r,o,t.t,t.rect.h,t.f,n)}}else this.renderSegment(e,t.viewInfo,t.f.get("start"),t.f.get("end"),r,o,t.t,t.rect.h,t.f,n)},renderSegment:function(e,t,i,n,r,a,s,l,c,h){var u=t.block.bpToX(i),d=t.block.bpToX(n)-u,f=u+d,g=this._getFeatureHeight(t,c);if(g){g!==l&&(s+=Math.round((l-g)/2));var p=s+g,b=t.block.bpToX(r),m=t.block.bpToX(a),v=Math.max(1,d),w=this.getConf("thinHeight",[c,this]),y=(g-w)/2,k=h(c,"color"),_=h(c,"borderColor"),x=h(c,"borderWidth"),S=x/2;if(d>3){var j=void 0,C=void 0;if(r<=i&&a>=n?(j=[u,s,d,g],C=[u+S,s+S,d-x,g-x]):r>=n||a<=i?(j=[u,s+y,d,w],C=[u+S,s+S+y,d-x,w-x]):r<=i&&a<n?(j=[[u,s],[m,s],[m,s+y],[f,s+y],[f,p-y],[m,p-y],[m,p],[u,p]],C=[[u+S,s+S],[m-S,s+S],[m-S,s+y+S],[f-S,s+y+S],[f-S,p-y-S],[m-S,p-y-S],[m-S,p-S],[u+S,p-S]]):r>i&&a>=n?(j=[[u,s+y],[b,s+y],[b,s],[f,s],[f,p],[b,p],[b,p-y],[u,p-y]],C=[[u+S,s+y+S],[b+S,s+y+S],[b+S,s+S],[f-S,s+S],[f-S,p-S],[b+S,p-S],[b+S,p-y-S],[u+S,p-y-S]]):r>i&&a<n&&(j=[[u,s+y],[b,s+y],[b,s],[m,s],[m,s+y],[f,s+y],[f,p-y],[m,p-y],[m,p],[b,p],[b,p-y],[u,p-y]],C=[[u+S,s+y+S],[b+S,s+y+S],[b+S,s+S],[m-S,s+S],[m-S,s+y+S],[f-S,s+y+S],[f-S,p-y-S],[m-S,p-y-S],[m-S,p-S],[b+S,p-S],[b+S,p-y-S],[u+S,p-y-S]]),k)if(e.fillStyle=k,j[0].length){e.beginPath(),e.moveTo.apply(e,o(j[0]));for(var A=1;A<j.length;A+=1)e.lineTo.apply(e,o(j[A]));e.fill()}else e.fillRect.apply(e,o(j));if(_&&x)if(e.lineWidth=x,e.strokeStyle=_,C[0].length){e.beginPath(),e.moveTo.apply(e,o(C[0]));for(var T=1;T<C.length;T+=1)e.lineTo.apply(e,o(C[T]));e.stroke()}else e.strokeRect.apply(e,o(C))}else e.globalAlpha=1,e.fillStyle=k,r<=i&&a>=n?(e.fillRect(u,s,v,g),e.globalAlpha=2*x/d,e.fillStyle=_,e.fillRect(u,s,v,g),e.globalAlpha=1):(e.fillRect(u,s+y,v,w),e.globalAlpha=2*x/d,e.fillStyle=_,e.fillRect(u,s+y,v,w),e.globalAlpha=1)}}})}.apply(null,n))||(e.exports=r)},506:function(e,t,i){var n,r;n=[i(575),i(471)],void 0===(r=function(e,t){return e(t,{clearFeat:function(e,t){},layoutFeature:function(e,t,i){var n=this.inherited(arguments);if(!n)return n;if(i.pairedFeature()){var r=Math.abs(i.read1.get("template_length")),o=void 0;this.track.config.readCloudLogScale?(o=Math.log(r+1)/Math.log(this.track.config.readCloudYScaleMax||this.track.insertSizeStats.max+1),o/=2):(o=r/(this.track.config.readCloudYScaleMax||this.track.insertSizeStats.upper),o/=3),o*=this.track.config.maxHeight,"compact"===this.track.config.displayMode&&(o/=4),n.rect.t=o,n.t=o}else n.t=0,n.rect.t=0;return n}})}.apply(null,n))||(e.exports=r)},507:function(e,t,i){var n,r;n=[i(575),i(577),i(576),i(398),i(377)],void 0===(r=function(e,t,i,n,r){return e(n,{_defaultConfig:function(){return this._mergeConfigs(i.clone(this.inherited(arguments)),{style:{color:r.colorArcs,mouseovercolor:"rgba(0,0,0,0)",strandArrow:!1,orientationType:"fr"}})},renderFeature:function(e,t){var i=this.getRadius(t.f,t.viewInfo.block);if(i.r&&!(Math.abs(i.r)<1)){var n=t.f;n.get("is_paired")&&(n.get("seq_id")!==n.get("next_seq_id")?this.track.config.showInterchromosomalArcs&&(e.beginPath(),e.strokeStyle=this.getConf("style.color",[n,i.span,this,this.track]),e.moveTo(i.drawFrom,0),e.lineTo(i.drawFrom,1e3),e.stroke()):this.track.config.showLargeArcs&&Math.abs(i.drawTo+i.r)>1e5?(e.beginPath(),e.strokeStyle=this.getConf("style.color",[n,i.span,this,this.track]),e.moveTo(i.drawTo,0),e.lineTo(i.drawTo,1e3),e.stroke()):(Math.abs(i.span)<this.track.config.maxInsertSize||this.track.config.showLargeArcs)&&(e.beginPath(),e.strokeStyle=this.getConf("style.color",[n,i.span,this,this.track]),e.arc(i.drawTo+i.r,0,Math.abs(i.r),0,Math.PI),e.stroke()))}},getRadius:function(e,t){var i=e.get("end")-e.get("start");if(e.get("seq_id"),!i)return{};var n=e.get("start"),r=e.get("end"),o=t.bpToX(r),a=t.bpToX(n);return{r:(a-o)/2,drawTo:o,drawFrom:a,span:Math.abs(n-r)}}})}.apply(null,n))||(e.exports=r)},508:function(e,t,i){var n,r;n=[i(575),i(576),i(355)],void 0===(r=function(e,t,i){return e(i,{renderBox:function(e,i,n,r,o,a,s){var l=i.block.bpToX(n.get("start")),c=i.block.bpToX(n.get("end"))-l;s=s||t.hitch(this,"getStyle");var h=this._getFeatureHeight(i,n);if(h){h!=o&&(r+=Math.round((o-h)/2));var u,d,f=s(n,"color");f?(e.fillStyle=f,e.beginPath(),e.moveTo(l,r+h/2),e.lineTo(l+Math.max(1,c)/2,r),e.lineTo(l+Math.max(1,c),r+h/2),e.lineTo(l+Math.max(1,c)/2,r+h),e.closePath(),e.fill()):e.clearRect(l,r,Math.max(1,c),h),(u=s(n,"borderColor"))&&(d=s(n,"borderWidth"))&&(c>3?(e.lineWidth=d,e.strokeStyle=u,e.beginPath(),e.moveTo(l,r+h/2),e.lineTo(l+Math.max(1,c)/2,r),e.lineTo(l+Math.max(1,c),r+h/2),e.lineTo(l+Math.max(1,c)/2,r+h),e.closePath(),e.stroke()):(e.globalAlpha=2*d/c,e.fillStyle=u,e.beginPath(),e.moveTo(l,r+h/2),e.lineTo(l+Math.max(1,c)/2,r),e.lineTo(l+Math.max(1,c),r+h/2),e.lineTo(l+Math.max(1,c)/2,r+h),e.closePath(),e.fill(),e.globalAlpha=1))}}})}.apply(null,n))||(e.exports=r)},509:function(e,t,i){var n,r;n=[i(575),i(577),i(356)],void 0===(r=function(e,t,i){return e(i,{constructor:function(e){if(this.print("track type=wiggle_0"),this.track){this.track.name&&this.print(' name="'+this.track.name+'"');var t=this.track.getMetadata();t.key&&this.print(' description="'+t.key+'"')}this.print("\n")},_printStep:function(e,t){this.print("variableStep"+(t?" chrom="+t:"")+" span="+e+"\n")},exportRegion:function(e,t){var i,n;this.store.getFeatures(e,dojo.hitch(this,function(e){var t=e.get("end")-e.get("start"),r=e.get("seq_id")||this.refSeq.name;i==t&&r==n||(this._printStep(t,r==n?null:r),n=r,i=t),this.print(e.get("start")+1+"\t"+e.get("score")+"\n")}),dojo.hitch(this,function(){t(this.output)}))}})}.apply(null,n))||(e.exports=r)},510:function(e,t,i){var n,r;n=[i(575),i(577),i(356)],void 0===(r=function(e,t,i){return e(i,{_printHeader:function(e){return this.print(">Feature "+(e.get("seq_id")||this.refSeq.name)+"\n"),!0},formatFeature:function(e){var i=this,n=this;this.headerPrinted||(this.headerPrinted=this._printHeader(e));var r=[e.get("start")+1,e.get("end"),e.get("type")||"region"];if(-1==e.get("strand")){var o=r[0];r[0]=r[1],r[1]=o}var a=t.map(t.filter(e.tags(),function(e){return!{start:1,end:1,type:1,strand:1,seq_id:1,subfeatures:1}[e.toLowerCase()]}),function(t){return[t.toLowerCase(),n.stringifyAttributeValue(e.get(t))]}).filter(function(e){return!!e[1]});return r.join("\t")+"\n"+t.map(a,function(e){return"\t\t\t"+e.join("\t")+"\n"}).join("")+t.map(e.children(),function(e){return i.formatFeature(e)}).join("")},stringifyAttributeValue:function(e){return null==e?null:e.hasOwnProperty("toString")?e.toString():e instanceof Array?e.join(","):e.values instanceof Array?e.join(","):e}})}.apply(null,n))||(e.exports=r)},511:function(e,t,i){var n,r,o="function"==typeof Symbol&&"symbol"==typeof Symbol.iterator?function(e){return typeof e}:function(e){return e&&"function"==typeof Symbol&&e.constructor===Symbol&&e!==Symbol.prototype?"symbol":typeof e},a=function(e){return e&&e.__esModule?e:{default:e}}(i(874));n=[i(575),i(576),i(577),i(356)],void 0===(r=function(e,t,i,n){return e(n,{constructor:function(e){this._idCounter=0,this.lastSync=0},gff3_field_names:["seq_id","source","type","start","end","score","strand","phase","attributes"],gff3_reserved_attributes:["ID","Name","Alias","Parent","Target","Gap","Derives_from","Note","Dbxref","Ontology_term","Is_circular"],_is_not_gff3_tab_field:function(e){if(!this._gff3_fields_by_name){var t={};dojo.forEach(this.gff3_field_names,function(e){t[e]=!0}),this._gff3_fields_by_name=t}return!this._gff3_fields_by_name[e.toLowerCase()]},_gff3_reserved_attribute:function(e){if(!this._gff3_reserved_attributes_by_lcname){var t={};dojo.forEach(this.gff3_reserved_attributes,function(e){t[e.toLowerCase()]=e}),this._gff3_reserved_attributes_by_lcname=t}return this._gff3_reserved_attributes_by_lcname[e.toLowerCase()]},exportRegion:function(e,t){this.print("##gff-version 3\n"),this.print("##sequence-region "+e.ref+" "+(e.start+1)+" "+e.end+"\n"),this.inherited(arguments)},formatFeature:function(e,t){var n=dojo.map([e.get("seq_id")||this.refSeq.name].concat(dojo.map(this.gff3_field_names.slice(1,8),function(t){return e.get(t)},this)),function(e){var t=void 0===e?"undefined":o(e);return a.default.util.escapeColumn("string"==t||"number"==t?e:".")},this);"number"==typeof parseInt(n[3])&&n[3]++,n[6]={1:"+","-1":"-",0:"."}[n[6]]||n[6];var r=this._gff3_attributes(e);t?r.Parent=t:delete r.Parent;var s=i.map(e.get("subfeatures")||[],function(e){return r.ID||(r.ID=++this._idCounter),this.formatFeature(e,r.ID)},this);n[8]=this._gff3_format_attributes(r);var l=n.join("\t")+"\n";return s.unshift(l),s.join("")},writeFeature:function(e){var t=this.formatFeature(e);this.print(t),this.lastSync>=9?(this.lastSync=0,this.print("###\n")):this.lastSync+=t.length||1},_gff3_attributes:function(e){var t=i.filter(e.tags(),dojo.hitch(this,function(e){return e=e.toLowerCase(),this._is_not_gff3_tab_field(e)&&"subfeatures"!=e})),n={};return i.forEach(t,function(t){var i=e.get(t),r=void 0===i?"undefined":o(i);if("boolean"==r)i=i?1:0;else if("undefined"==r)return;t=this._gff3_reserved_attribute(t)||this._ensure_non_reserved(t),n[t]=i},this),n},_ensure_non_reserved:function(e){return e.replace(/^[A-Z]/,function(){return"_"+e[0]})},_gff3_format_attributes:function(e){var t=[];for(var n in e){var r=e[n];if(r){var o=r.hasOwnProperty("toString")?a.default.util.escape(r.toString()):r instanceof Array?i.map(r,function(e){return a.default.util.escape(e)}).join(","):r instanceof Object?a.default.util.escape(JSON.stringify(r)):r.values&&r instanceof Array?i.map(r,function(e){return a.default.util.escape(e)}).join(","):a.default.util.escape(r);t.push(a.default.util.escape(n)+"="+o)}}return t.join(";")||"."}})}.apply(null,n))||(e.exports=r)},512:function(e,t,i){var n,r;n=[i(575),i(577),i(356),i(334)],void 0===(r=function(e,t,i,n){return e(i,{constructor:function(e){},exportRegion:function(e,t){this.store.getReferenceSequence(e,dojo.hitch(this,function(i){t(this._formatFASTA(e,i))}))},_formatFASTA:function(e,t){return">"+this.refSeq.name+" "+n.assembleLocString(e)+"\n"+this._wrap(t,78)},_wrap:function(e,t){return t=t||78,e.replace(new RegExp("(.{"+t+"})","g"),"$1\n")}})}.apply(null,n))||(e.exports=r)},513:function(e,t,i){var n,r;n=[i(575),i(577),i(473)],void 0===(r=function(e,t,i){return e(i,{constructor:function(e){},_printHeader:function(){if(this.print("track type=bedGraph"),this.track){this.track.name&&this.print(' name="'+this.track.name+'"');var e=this.track.getMetadata();e.key&&this.print(' description="'+e.key+'"')}this.print("\n")},formatFeature:function(e){return[e.get("seq_id")||this.refSeq.name,e.get("start"),e.get("end"),e.get("score")].join("\t")+"\n"}})}.apply(null,n))||(e.exports=r)},514:function(e,t,i){var n,r;n=[i(575),i(577),i(579),i(580),i(595),i(647),i(596),i(651),i(606),i(385),i(334)],void 0===(r=function(e,t,i,n,r,o,a,s,l,c,h){return e(null,{constructor:function(e){this.browser=e.browser,this.config=dojo.clone(e.config||{}),this.locationChoices=[{label:"Search results...",description:" ",start:0,end:100,ref:"chr"}],this.title=e.title||"Choose location",this.prompt=e.prompt||"Search for features",this.goCallback=e.goCallback,this.showCallback=e.showCallback},show:function(){var e=this.dialog=new o({title:this.title,className:"locationChoiceDialog",style:{width:"70%"}}),t=i.create("div",{});if(this.prompt){i.create("div",{className:"prompt",innerHTML:this.prompt},t);var h=dojo.create("div",{style:{padding:"20px"}},t);dojo.create("img",{width:"16px",src:"img/search.png",style:{"padding-right":"5px"}},h),this.searchBox=new s({intermediateChanges:!0}).placeAt(h),dojo.create("label",{style:{marginLeft:"20px"},for:"exact_match",innerHTML:"Exact?"},h),this.exactCheckbox=dojo.create("input",{type:"checkbox",id:"exact_match"},h),n(this.searchBox,"change",dojo.hitch(this,"searchBoxProcess")),n(this.exactCheckbox,"change",dojo.hitch(this,"searchBoxProcess"))}var u=this.browser;this.locationListView=new c({browser:u,locations:this.locationChoices,buttons:[{className:"show",innerHTML:"Show",onClick:this.showCallback||function(e){u.showRegionAfterSearch(e)}},{className:"go",innerHTML:"Go",onClick:this.goCallback||function(t){e.hide(),u.showRegionAfterSearch(t)}}]},i.create("div",{className:"locationList",style:{maxHeight:.5*this.browser.container.offsetHeight+"px"}},t)),this.actionBar=dojo.create("div",{className:"infoDialogActionBar dijitDialogPaneActionBar"}),new a({iconClass:"dijitIconDelete",label:"Cancel",onClick:dojo.hitch(e,"hide")}).placeAt(this.actionBar),this.numResults=dojo.create("div",{id:"numResults",style:{margin:"10px"}},t),this.errResults=dojo.create("div",{id:"errResults",style:{margin:"10px",color:"red"}},t),e.set("content",[t,this.actionBar]);var d=this.locationListView.grid;(d.store||d.collection).setData([]),d.refresh(),e.show(),r.after(e,"hide",dojo.hitch(this,function(){l.curNode&&l.curNode.blur(),setTimeout(function(){e.destroyRecursive()},500)}))},searchBoxProcess:function(){var e=this,t=this.searchBox.get("value");function i(e){console.error(e);var t=this.locationListView.grid;(t.store||t.collection).setData([]),t.refresh(),this.errResults.innerHTML="Error: failed to load results",this.numResults.innerHTML=""}this.numResults.innerHTML="",this.exactCheckbox.checked||(t+="*"),this.browser.nameStore.query({name:t}).then(function(t){var n=t.map(function(t){return e.browser.nameStore.query({name:t.name})});Promise.all(n).then(function(t){for(var i=[],n=0;n<t.length;n++){var r=t[n];if(r.length)if((r=r[0]).multipleLocations)for(var o=0;o<r.multipleLocations.length;o++){var a=r.multipleLocations[o].tracks.length?r.multipleLocations[o].tracks[0]:{};i.push({locstring:h.assembleLocString(r.multipleLocations[o]),location:r.multipleLocations[o],label:r.name,description:a.key||a.label||"Unknown track",tracks:a})}else a=(r.location.tracks||[]).length?r.location.tracks[0]:{},i.push({locstring:h.assembleLocString(r.location),location:r.location,label:r.location.objectName,description:a.key||a.label||"Unknown track",tracks:a})}e.numResults.innerHTML="Num. results: "+i.length;var s=e.locationListView.grid;(s.store||s.collection).setData(i),s.refresh(),e.errResults.innerHTML=""},dojo.hitch(e,i))},dojo.hitch(this,i))}})}.apply(null,n))||(e.exports=r)},515:function(e,t,i){var n;void 0===(n=function(){return{plusStrand:function(e){var t=e.get("strand");return 1==t||"+"==t},minusStrand:function(e){var t=e.get("strand");return-1==t||"-"==t},all:function(e){return!0},none:function(e){return!1}}}.apply(null,[]))||(e.exports=n)},516:function(e,t,i){var n,r;n=[i(575),i(350)],void 0===(r=function(e,t){return e(t,{configSchema:{slots:[{name:"maxFeatureSizeForUnderlyingRefSeq",type:"integer",defaultValue:25e4},{name:"pinned",type:"boolean",defaultValue:!1},{name:"metadata",type:"object",defaultValue:{}},{name:"style.trackLabelCss",type:"string"},{name:"label",type:"string"},{name:"query",type:"object",defaultValue:{},shortDesc:"track-specific query variables to pass to the store"},{name:"store",type:"string|object",shortDesc:"the name of the store to use with this track"},{name:"type",type:"string",shortDesc:"the JavaScript type of this track"}]}})}.apply(null,n))||(e.exports=r)},517:function(e,t,i){var n,r,o="function"==typeof Symbol&&"symbol"==typeof Symbol.iterator?function(e){return typeof e}:function(e){return e&&"function"==typeof Symbol&&e.constructor===Symbol&&e!==Symbol.prototype?"symbol":typeof e};n=[i(575),i(577),i(784),i(334),i(351)],void 0===(r=function(e,t,i,n,r){var a=n.dojof,s=e(null,{_noDataValue:"(no data)",constructor:function(e){var t=["conf"];this._filterFacet=function(){var i=e.indexFacets||function(){return!0};if("string"==typeof i&&(i=[i]),dojo.isArray(i)){var n=i;i=function(e){return dojo.some(n,function(t){return e==t.toLowerCase()})}}var r=this.getIdentityAttributes();return function(e){return dojo.some(r,function(t){return t==e})||i(e)&&!dojo.some(t,function(t){return t==e})}}.call(this),dojo.isArray(e.onReady)?this.onReadyFuncs=dojo.clone(e.onReady):this.onReadyFuncs=e.onReady?[e.onReady]:[],this._indexItems({store:this,items:dojo.map(e.trackConfigs,dojo.hitch(this,"_trackConfigToItem"))});var i=0;if(e.metadataStores=dojo.filter(e.metadataStores,function(e){return e}),e.metadataStores&&e.metadataStores.length){var n=dojo.hitch(this,function(){++i==e.metadataStores.length&&this._finishLoad()});dojo.forEach(e.metadataStores,function(e){e.fetch({scope:this,onComplete:dojo.hitch(this,function(t){this._indexItems({store:e,items:t,supplementalOnly:!0}),n()}),onError:function(e){console.error(e,e.stack),n()}})},this)}else this._finishLoad();e.browser.subscribe("/jbrowse/v1/c/tracks/new",dojo.hitch(this,"addTracks")),e.browser.subscribe("/jbrowse/v1/c/tracks/replace",dojo.hitch(this,function(e){this.deleteTracks(e,"no events"),this.addTracks(e,"no events")})),e.browser.subscribe("/jbrowse/v1/c/tracks/delete",dojo.hitch(this,"deleteTracks"))},_trackConfigToItem:function(e){var t=dojo.clone(e.metadata||{});return t.label=e.label,t.key=e.key,t.conf=e,t["track type"]=e.type,e.category&&(t.category=e.category),t},comparatorMap:{category:function(e,t){for(var i,n,r,o=(e||"Uncategorized").split(/\s*\/\s*/),a=(t||"Uncategorized").split(/\s*\/\s*/);(i=o.shift())&&(n=a.shift());)if(r=i.localeCompare(n))return r;return 0}},addTracks:function(e,i){e.length&&(delete this.previousQueryFingerprint,delete this.previousResults),t.forEach(e,function(e){this._indexItems({store:this,items:[this._trackConfigToItem(e)]});var t=e.label,n=this.fetchItemByIdentity(t);n?i||this.onNew(n):console.error("failed to add "+t+" track to track metadata store",e)},this)},deleteTracks:function(e,i){e.length&&(delete this.previousQueryFingerprint,delete this.previousResults),t.forEach(e,function(e){var t=e.label,n=this.fetchItemByIdentity(t);n&&(n.DELETED=!0,i||this.onDelete(n))},this)},_finishLoad:function(){this.facets.sort(),dojo.forEach(a.values(this.facetIndexes.byName),function(e){e.avgBucketSize=e.itemCount/e.bucketCount}),this.facetIndexes.facetRank=dojo.clone(this.facets).sort(dojo.hitch(this,function(e,t){return this.facetIndexes.byName[e].avgBucketSize-this.facetIndexes.byName[t].avgBucketSize}));var 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n&&(n.writable=!0),Object.defineProperty(e,n.key,n)}}return function(t,i,n){return i&&e(t.prototype,i),n&&e(t,n),t}}(),a=i(652),s=i(1567),l=s.IndexedCramFile,c=s.CraiIndex,h=i(1813).CramSizeLimitError,u=new a({maxSize:5}),d=i(347),f=function(){function e(t,i){!function(e,t){if(!(e instanceof t))throw new TypeError("Cannot call a class as a function")}(this,e),this.record=t,this._store=i}return o(e,[{key:"_get_id",value:function(){return this.id()}},{key:"_get_name",value:function(){return this.record.readName}},{key:"_get_start",value:function(){return this.record.alignmentStart-1}},{key:"_get_end",value:function(){return this.record.alignmentStart+this.record.lengthOnRef-1}},{key:"_get_cram_read_features",value:function(){return this.record.readFeatures}},{key:"_get_type",value:function(){return"match"}},{key:"_get_score",value:function(){return this.record.mappingQuality}},{key:"_get_mapping_quality",value:function(){return this.record.mappingQuality}},{key:"_get_flags",value:function(){return"0x"+this.record.flags.toString(16)}},{key:"_get_cramFlags",value:function(){return"0x"+this.record.cramFlags.toString(16)}},{key:"_get_strand",value:function(){return this.record.isReverseComplemented()?-1:1}},{key:"_get_read_group_id",value:function(){return this.record.readGroupId}},{key:"_get_qual",value:function(){return(this.record.qualityScores||[]).map(function(e){return e+33}).join(" ")}},{key:"_get_seq_id",value:function(){return this._store._refIdToName(this.record.sequenceId)}},{key:"_get_qc_failed",value:function(){return this.record.isFailedQc()}},{key:"_get_secondary_alignment",value:function(){return this.record.isSecondary()}},{key:"_get_duplicate",value:function(){return this.record.isDuplicate()}},{key:"_get_supplementary_alignment",value:function(){return this.record.isSupplementary()}},{key:"_get_pair_orientation",value:function(){return this.record.getPairOrientation()}},{key:"_get_multi_segment_template",value:function(){return this.record.isPaired()}},{key:"_get_multi_segment_all_correctly_aligned",value:function(){return this.record.isProperlyPaired()}},{key:"_get_multi_segment_all_aligned",value:function(){return this.record.isProperlyPaired()}},{key:"_get_multi_segment_next_segment_unmapped",value:function(){return this.record.isMateUnmapped()}},{key:"_get_multi_segment_first",value:function(){return this.record.isRead1()}},{key:"_get_multi_segment_last",value:function(){return this.record.isRead2()}},{key:"_get_multi_segment_next_segment_reversed",value:function(){return this.record.isMateReverseComplemented()}},{key:"_get_is_paired",value:function(){return!!this.record.mate}},{key:"_get_unmapped",value:function(){return this.record.isSegmentUnmapped()}},{key:"_get_template_length",value:function(){return this.record.templateLength||this.record.templateSize}},{key:"_get_next_seq_id",value:function(){return this.record.mate?this._store._refIdToName(this.record.mate.sequenceId):void 0}},{key:"_get_next_pos",value:function(){return this.record.mate?this.record.mate.alignmentStart:void 0}},{key:"_get_next_segment_position",value:function(){return this.record.mate?this._store._refIdToName(this.record.mate.sequenceId)+":"+this.record.mate.alignmentStart:void 0}},{key:"_get_tags",value:function(){return this.record.tags}},{key:"_get_seq",value:function(){return this.record.getReadBases()}}]),o(e,[{key:"tags",value:function(){return Object.getOwnPropertyNames(e.prototype).filter(function(e){return/^_get_/.test(e)}).map(function(e){return e.replace("_get_","")})}},{key:"id",value:function(){return this.record.uniqueId+1}},{key:"_get",value:function(e){var t="_get_"+e;if(this[t])return this[t]()}},{key:"get",value:function(e){var t="_get_"+e.toLowerCase();if(this[t])return this[t]()}},{key:"parent",value:function(){}},{key:"children",value:function(){}},{key:"pairedFeature",value:function(){return!1}}]),e}();n=[i(575),i(334),i(342),i(336),i(340),i(339),i(349),i(402),i(403),i(404),i(337),i(338)],void 0===(r=function(e,t,i,n,r,o,a,s,g,p,b,m){return e([n,r,o,a],{constructor:function(e){var t=this,i=void 0;if(e.cram)i=new d(e.cram);else{if(!e.urlTemplate)throw new Error("must provide either `cram` or `urlTemplate`");i=new d(new b(this.resolveUrl(e.urlTemplate||"data.cram"),{expectRanges:!0}))}var n=void 0;if(e.crai)n=new d(e.crai);else if(e.craiUrlTemplate)n=new d(new b(this.resolveUrl(e.craiUrlTemplate)));else{if(!e.urlTemplate)throw new Error("no index provided, must provide a CRAM index");n=new d(new b(this.resolveUrl(e.urlTemplate+".crai")))}this.source=i.toString();var r="data: "+i+", index: "+n;this.cram=u.get(r),this.cram||(this.cram=new l({cramFilehandle:i,index:new c({filehandle:n}),seqFetch:this._seqFetch.bind(this),checkSequenceMD5:!1,fetchSizeLimit:e.fetchSizeLimit||6e7}),u.set(r,this.cram)),this.cram.hasDataForReferenceSequence(0).then(function(){return t.cram.cram.getSamHeader()}).then(function(e){t._setSamHeader(e)}).then(function(){t._deferred.features.resolve({success:!0})}).then(function(){return t._estimateGlobalStats()}).then(function(e){t.globalStats=e,t._deferred.stats.resolve({success:!0})}).catch(function(e){t._deferred.features.reject(e),t._deferred.stats.reject(e)}),this.insertSizeCache=new p(e),this.pairCache=new s(e),this.spanCache=new g(e)},_setSamHeader:function(e){var t=this;this._samHeader={};var i=[],n={};e.filter(function(e){return"SQ"===e.tag}).forEach(function(e,r){e.data.forEach(function(e){if("SN"===e.tag){var o=t.browser.regularizeReferenceName(e.value);n[o]=r,i[r]=o}})}),i.length&&(this._samHeader.refSeqIdToName=i,this._samHeader.refSeqNameToId=n)},_refNameToId:function(e){return this._samHeader.refSeqNameToId?this._samHeader.refSeqNameToId[e]:this.browser.getRefSeqNumber(e)},_refIdToName:function(e){if(this._samHeader.refSeqIdToName)return this._samHeader.refSeqIdToName[e];var t=this.browser.getRefSeqById(e);return t?t.name:void 0},_getRefSeqStore:function(){var e=this;return new Promise(function(t,i){e.browser.getStore("refseqs",t,i)})},_seqFetch:function(e,t,i){var n=this;return function(e){return function(){var t=e.apply(this,arguments);return new Promise(function(e,i){return function n(r,o){try{var a=t[r](o),s=a.value}catch(e){return void i(e)}if(!a.done)return Promise.resolve(s).then(function(e){n("next",e)},function(e){n("throw",e)});e(s)}("next")})}}(regeneratorRuntime.mark(function r(){var o,a,s,l,c;return regeneratorRuntime.wrap(function(r){for(;;)switch(r.prev=r.next){case 0:return t-=1,r.next=3,n._getRefSeqStore();case 3:if(o=r.sent){r.next=6;break}return r.abrupt("return",void 0);case 6:if(a=n._refIdToName(e)){r.next=9;break}return r.abrupt("return",void 0);case 9:return r.next=11,new Promise(function(e,n){var r=[];o.getFeatures({ref:a,start:t-1,end:i},function(e){return r.push(e)},function(){return e(r)},n)});case 11:if(s=r.sent,l=[],s.sort(function(e,t){return e.get("start")-t.get("start")}).forEach(function(e,n){var r=e.get("start"),o=e.get("end"),a=Math.max(t-r,0),s=Math.min(i-r,o-r)-a,c=e.get("seq")||e.get("residues");l.push(c.substr(a,s))}),(c=l.join("")).length===i-t){r.next=17;break}throw new Error("sequence fetch failed: fetching "+(t-1).toLocaleString()+"-"+i.toLocaleString()+" only returned "+c.length.toLocaleString()+" bases, but should have returned "+(i-t).toLocaleString());case 17:return r.abrupt("return",c);case 18:case"end":return r.stop()}},r,n)}))()},hasRefSeq:function(e,t,i){var n=this;e=this.browser.regularizeReferenceName(e);var r=this._refNameToId(e);void 0===r&&t(!1),this._deferred.stats.then(function(){return n.cram.hasDataForReferenceSequence(r)}).then(t,i)},_getFeatures:function(e,t,n,r){var o=this,a=e.ref||this.refSeq.name,s=this._refNameToId(this.browser.regularizeReferenceName(a));e.maxInsertSize=e.maxInsertSize||5e4,void 0!==s?this.cram.getRecordsForRange(s,e.start+1,e.end,{viewAsPairs:e.viewAsPairs,viewAsSpans:e.viewAsSpans,maxInsertSize:e.maxInsertSize}).then(function(i){if(e.viewAsPairs){var a=i.map(function(e){return o._cramRecordToFeature(e)});a.forEach(function(e){return o.insertSizeCache.insertFeat(e)}),o.pairCache.pairFeatures(e,a,t,n,r)}else if(e.viewAsSpans){var s=i.map(function(e){return o._cramRecordToFeature(e)});s.forEach(function(e){return o.insertSizeCache.insertFeat(e)}),o.spanCache.pairFeatures(e,s,t,n,r)}else for(var l=0;l<i.length;l++){var c=o._cramRecordToFeature(i[l]);o.insertSizeCache.insertFeat(c),t(c)}n()}).catch(function(e){e instanceof h&&(e=new i.DataOverflow(e)),r(e)}):n()},getInsertSizeStats:function(){return this.insertSizeCache.getInsertSizeStats()},cleanFeatureCache:function(e){this.pairCache.cleanFeatureCache(e),this.spanCache.cleanFeatureCache(e)},cleanStatsCache:function(){this.insertSizeCache.cleanStatsCache()},_cramRecordToFeature:function(e){return new f(e,this)},saveStore:function(){return{urlTemplate:this.config.cram.url,craiUrlTemplate:this.config.crai.url}}})}.apply(null,n))||(e.exports=r)},534:function(e,t,i){var n,r;n=[i(575),i(577),i(587),i(338),i(378)],void 0===(r=function(e,t,i,n,r){return e([r],{createFeatures:function(e){var t=[];for(var i in e){var r="comfeat_"+e[i].start+"."+e[i].end+"."+e[i].strand;t.push(new n({data:{start:e[i].start,end:e[i].end,strand:e[i].strand},id:r}))}return t},opSpan:function(e,t,i,n){switch(e){case"&":return this.andSpan(t,i);case"U":return this.orSpan(t,i);case"X":return this.andSpan(this.orSpan(t,i),this.notSpan(this.andSpan(t,i),n));case"S":return this.andSpan(t,this.notSpan(i,n));default:console.error("Invalid boolean operation: "+e)}},toSpan:function(e,t){var i=this._rawToSpan(e,t);return this._removeOverlap(this._strandFilter(i,1)).concat(this._removeOverlap(this._strandFilter(i,-1)))},_rawToSpan:function(e,t){var i=[];for(var n in e)e.hasOwnProperty(n)&&i.push({start:e[n].get("start"),end:e[n].get("end"),strand:e[n].get("strand")});return i},_strandFilter:function(e,i){return t.filter(e,function(e){return e.strand==i||!e.strand}).map(function(e){return e.strand?e:{start:e.start,end:e.end,strand:i}})},_removeOverlap:function(e){return e.length?(e.sort(function(e,t){return e.start-t.start}),this._removeOverlapSorted(e)):[]},_removeOverlapSorted:function(e){for(var t=[],i=0,n=e[0].strand;i<e.length;){for(var r=e[i].start,o=e[i].end;i<e.length&&e[i].start<=o;)o=Math.max(o,e[i].end),i++;t.push({start:r,end:o,strand:n})}return t},orSpan:function(e,t){return this._computeUnion(this._strandFilter(e,1),this._strandFilter(t,1)).concat(this._computeUnion(this._strandFilter(e,-1),this._strandFilter(t,-1)))},andSpan:function(e,t){return this._computeIntersection(this._strandFilter(e,1),this._strandFilter(t,1)).concat(this._computeIntersection(this._strandFilter(e,-1),this._strandFilter(t,-1)))},_sortedArrayMerge:function(e,t){for(var i=[],n=0,r=0;n<e.length&&r<t.length;)e[n].start<=t[r].start?(i.push(e[n]),n++):(i.push(t[r]),r++);return n<e.length?i=i.concat(e.slice(n,e.length)):r<t.length&&(i=i.concat(t.slice(r,t.length))),i},_computeUnion:function(e,t){return e.length||t.length?this._removeOverlapSorted(this._sortedArrayMerge(e,t)):[]},_computeIntersection:function(e,t){if(!e.length||!t.length)return[];for(var i=this._sortedArrayMerge(e,t),n=[],r=i[0].end,o=e[0].strand,a=1;a<i.length;){var s=i[a].start,l=Math.min(i[a].end,r);s<l&&n.push({start:s,end:l,strand:o}),r=Math.max(i[a].end,r),a++}return n},notSpan:function(e,t){return this._rawNotSpan(this._strandFilter(e,1),t,1).concat(this._rawNotSpan(this._strandFilter(e,-1),t,-1))},_rawNotSpan:function(e,t,i){var n=[];n[0]={start:t.start};var r=0;for(var o in e)e.hasOwnProperty(o)&&(o=e[o],n[r].strand=i,n[r].end=o.start,n[++r]={start:o.end});return n[r].strand=i,n[r].end=t.end,n[r].end<=n[r].start&&n.splice(r,1),n[0].end<=n[0].start&&n.splice(0,1),n},loadRegion:function(e){var t=new i;if(1==this.stores.length)return t.resolve(this,!0),t.promise;var n=this,r=e;return r.spans=[],delete this.regionLoaded,this._getFeatures(e,function(){},function(e){e&&e.spans&&(r.spans=e.spans,n.regionLoaded=r),t.resolve(n,!0)},function(){t.reject("cannot load region")}),t.promise}})}.apply(null,n))||(e.exports=r)},535:function(e,t,i){var n,r;n=[i(575),i(576),i(577),i(379),i(405),i(338)],void 0===(r=function(e,t,i,n,r,o){var a={};return e(n,{constructor:function(e){},_getFeatures:function(e,t,i,n){var r=this,o=this.browser.regularizeReferenceName(e.ref),a=this.getUnzoomedView();a?a.readWigData(o,e.start,e.end,function(e){r.applyFeatureTransforms(e||[]).forEach(t),i()},n):i()},supportsFeatureTransforms:!0,getView:function(){return this.getUnzoomedView()},getPredefinedFeatureTransform:function e(t){return a[t]||this.inherited(e,arguments)}})}.apply(null,n))||(e.exports=r)},536:function(e,t,i){var n,r,o=i(881).TabixIndexedFile;n=[i(575),i(576),i(342),i(336),i(340),i(339),i(364),i(365),i(347),i(337),i(338),i(406)],void 0===(r=function(e,t,i,n,r,a,s,l,c,h,u,d){return e([n,r,a,s,l],{constructor:function(e){var i,n,r=this,a=this;e.csi||this.config.csiUrlTemplate?i=e.csi||new h(this.resolveUrl(this.getConf("csiUrlTemplate",[]))):n=e.tbi||new h(this.resolveUrl(this.getConf("tbiUrlTemplate",[])||this.getConf("urlTemplate",[])+".tbi"));var s=e.file||new h(this.resolveUrl(this.getConf("urlTemplate",[])),{expectRanges:!0});this.indexedData=new o({filehandle:new c(s),tbiFilehandle:n&&new c(n),csiFilehandle:i&&new c(i),chunkSizeLimit:e.chunkSizeLimit||1e6,renameRefSeqs:function(e){return r.browser.regularizeReferenceName(e)}}),this.parser=new d({commentCallback:this.config.commentCallback||function(e){},store:this}),this.getHeader().then(function(e){a._deferred.features.resolve({success:!0}),a._estimateGlobalStats().then(function(e){a.globalStats=e,a._deferred.stats.resolve(e)},t.hitch(a,"_failAllDeferred"))},t.hitch(a,"_failAllDeferred"))},getHeader:function(){var e=this;return this._parsedHeader||(this._parsedHeader=this.indexedData.lineCount("nonexistent").then(function(){return e.indexedData.getHeader()}).then(function(t){return e.parser.parseHeader(t)})),this._parsedHeader},_getFeatures:function(e,t,n,r){var o=this;this.getHeader().then(function(){o.indexedData.getMetadata().then(function(i){var n=o.browser.regularizeReferenceName(e.ref);return o.indexedData.getLines(n||o.refSeq.name,e.start,e.end,function(e){o.applyFeatureTransforms([o.lineToFeature(i.columnNumbers,e)]).forEach(function(e){o.config.featureCallback&&(e=o.config.featureCallback(e)),t(e)})})}).then(n,function(e){r?(e.message&&e.message.indexOf("Too much data")>=0&&(e=new i.DataOverflow(e.message)),r(e)):console.error(e)})},r)},supportsFeatureTransforms:!0,_featureData:function(e){var i=t.mixin({},e);for(var n in e.matrix)i[n.toLowerCase()]=e.attributes[n].join(",");return i},_formatFeature:function(e){var t=new u({data:this._featureData(e),id:e.seq_id+"_"+e.start+"_"+e.end+"_"+e.name});return t._reg_seq_id=this.browser.regularizeReferenceName(e.seq_id),t},lineToFeature:function(e,t){for(var i=t.split("\t"),n=0;n<i.length;n++)"."==i[n]&&(i[n]=null);var r={start:parseInt(i[e.start-1]),end:parseInt(i[e.end-1]),seq_id:i[e.ref-1],name:i[3],score:i[4]||null,strand:{"+":1,"-":-1}[i[5]]||0,thick_start:i[6],thick_end:i[7],itemrgb:i[8],block_count:i[9],block_sizes:i[10],chrom_starts:i[11]};return new u({id:i.slice(0,5).join("/"),data:r,fields:i})},hasRefSeq:function(e,t,i){return this.indexedData.index.hasRefSeq(e,t,i)},saveStore:function(){return{urlTemplate:this.config.file.url,tbiUrlTemplate:(this.config.tbi||{}).url,csiUrlTemplate:(this.config.csi||{}).url}}})}.apply(null,n))||(e.exports=r)},537:function(e,t,i){var n,r;n=[i(575),i(576),i(577),i(587),i(338),i(336),i(339),i(340),i(349),i(365),i(337),i(406)],void 0===(r=function(e,t,i,n,r,o,a,s,l,c,h,u){return e([o,a,s,l,c],{constructor:function(e){this.data=e.blob||new h(this.resolveUrl(this._evalConf(e.urlTemplate))),this.features=[],this._loadFeatures()},_loadFeatures:function(){var e=this,n=this.bareFeatures=[],r=!0,o=this.refSeqs={},a=new 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n({store:this.store,browser:this.browser,windowSize:this.config.windowSize,windowDelta:this.config.windowDelta,gcMode:this.config.gcMode})},_defaultConfig:function(){return a.deepUpdate(i.clone(this.inherited(arguments)),{min_score:0,max_score:1,maxZoom:.001,windowSize:100,windowDelta:10,gcMode:"content",bicolor_pivot:.5,scoreType:"avgScore",logScaleOption:!1})},_trackMenuOptions:function(){var e=this,t=this.inherited(arguments);return t.push({label:"GC Track Options",onClick:function(){new r({setCallback:function(t,i,n){e.config.windowSize=t,e.config.windowDelta=i,e.config.gcMode=n,"skew"===n?(e.config.min_score=-1,e.config.bicolor_pivot=0):(e.config.min_score=0,e.config.bicolor_pivot=.5),e.browser.publish("/jbrowse/v1/c/tracks/replace",[e.config])},windowSize:e.config.windowSize,windowDelta:e.config.windowDelta,gcMode:e.config.gcMode}).show()}}),t},fillBlock:function(e){var t=e.block,i=e.blockIndex,n=e.scale,r=dojo.create("div",{className:"sequence_blur",innerHTML:'<span class="loading">Loading</span>'},t.domNode);this.heightUpdate(r.offsetHeight+2*r.offsetTop,i),n>=this.config.maxZoom?this.inherited(arguments):(r.innerHTML='<span class="zoom">Zoom in to see GC content</span>',e.finishCallback())}})}.apply(null,n))||(e.exports=r)},561:function(e,t,i){var n,r;n=[i(575),i(577),i(576),i(413),i(414),i(461),i(334)],void 0===(r=function(e,t,i,n,r,o,a){return e(o,{constructor:function(){this.store=new n({store:this.store,browser:this.browser,windowSize:this.config.windowSize,windowDelta:this.config.windowDelta,gcMode:this.config.gcMode})},_defaultConfig:function(){return a.deepUpdate(i.clone(this.inherited(arguments)),{min_score:0,max_score:1,maxZoom:.001,windowSize:100,windowDelta:10,gcMode:"content",bicolor_pivot:.5,scoreType:"avgScore",logScaleOption:!1})},_trackMenuOptions:function(){var e=this,t=this.inherited(arguments);return t.push({label:"GC Track Options",onClick:function(){new r({setCallback:function(t,i,n){e.config.windowSize=t,e.config.windowDelta=i,e.config.gcMode=n,"skew"===n?(e.config.min_score=-1,e.config.bicolor_pivot=0):(e.config.min_score=0,e.config.bicolor_pivot=.5),e.browser.publish("/jbrowse/v1/c/tracks/replace",[e.config])},windowSize:e.config.windowSize,windowDelta:e.config.windowDelta,gcMode:e.config.gcMode}).show()}}),t},fillBlock:function(e){var t=e.block,i=e.blockIndex,n=e.scale,r=dojo.create("div",{className:"sequence_blur",innerHTML:'<span class="loading">Loading</span>'},t.domNode);this.heightUpdate(r.offsetHeight+2*r.offsetTop,i),n>=this.config.maxZoom?this.inherited(arguments):(r.innerHTML='<span class="zoom">Zoom in to see GC content</span>',e.finishCallback())}})}.apply(null,n))||(e.exports=r)},562:function(e,t,i){var n,r;n=[i(575),i(344)],void 0===(r=function(e,t){return e(t,{constructor:function(e){var t=e.browser;console.log("GCContent plugin 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loadNames")}),this.browser.afterMilestone("loadConfig",function(){console.log("Milestone: loadConfig")}),this.browser.afterMilestone("initTrackMetadata",function(){console.log("Milestone: initTrackMetadata")}),this.browser.afterMilestone("createTrack",function(){console.log("Milestone: createTrack")}),dojo.subscribe("/jbrowse/v1/v/tracks/new",function(e){console.log("Event: /jbrowse/v1/v/tracks/new",e)}),dojo.subscribe("/jbrowse/v1/v/tracks/show",function(e){console.log("Event: /jbrowse/v1/v/tracks/show",e)}),dojo.subscribe("/jbrowse/v1/c/tracks/show",function(e){console.log("Event: /jbrowse/v1/c/tracks/show",e)}),dojo.subscribe("/jbrowse/v1/v/tracks/hide",function(e){console.log("Event: /jbrowse/v1/v/tracks/hide",e)}),dojo.subscribe("/jbrowse/v1/c/tracks/hide",function(e){console.log("Event: /jbrowse/v1/c/tracks/hide",e)}),dojo.subscribe("/jbrowse/v1/v/tracks/hide",function(e){console.log("Event: /jbrowse/v1/v/tracks/hide",e)}),dojo.subscribe("/jbrowse/v1/c/tracks/new",function(e){console.log("Event: /jbrowse/v1/c/tracks/new",e)}),dojo.subscribe("/jbrowse/v1/n/tracks/new",function(e){console.log("Event: /jbrowse/v1/n/tracks/new",e)}),dojo.subscribe("/jbrowse/v1/v/tracks/replace",function(e){console.log("Event: /jbrowse/v1/v/tracks/replace",e)}),dojo.subscribe("/jbrowse/v1/c/tracks/replace",function(e){console.log("Event: /jbrowse/v1/c/tracks/replace",e)}),dojo.subscribe("/jbrowse/v1/n/tracks/replace",function(e){console.log("Event: /jbrowse/v1/n/tracks/replace",e)}),dojo.subscribe("/jbrowse/v1/v/tracks/delete",function(e){console.log("Event: /jbrowse/v1/v/tracks/delete",e)}),dojo.subscribe("/jbrowse/v1/c/tracks/delete",function(e){console.log("Event: /jbrowse/v1/c/tracks/delete",e)}),dojo.subscribe("/jbrowse/v1/n/tracks/delete",function(e){console.log("Event: /jbrowse/v1/n/tracks/delete",e)}),dojo.subscribe("/jbrowse/v1/v/tracks/pin",function(e){console.log("Event: /jbrowse/v1/v/tracks/pin",e)}),dojo.subscribe("/jbrowse/v1/c/tracks/pin",function(e){console.log("Event: /jbrowse/v1/c/tracks/pin",e)}),dojo.subscribe("/jbrowse/v1/n/tracks/pin",function(e){console.log("Event: /jbrowse/v1/n/tracks/pin",e)}),dojo.subscribe("/jbrowse/v1/v/tracks/unpin",function(e){console.log("Event: /jbrowse/v1/v/tracks/unpin",e)}),dojo.subscribe("/jbrowse/v1/c/tracks/unpin",function(e){console.log("Event: /jbrowse/v1/c/tracks/unpin",e)}),dojo.subscribe("/jbrowse/v1/n/tracks/unpin",function(e){console.log("Event: /jbrowse/v1/n/tracks/unpin",e)}),dojo.subscribe("/jbrowse/v1/n/tracks/visibleChanged",function(e){console.log("Event: /jbrowse/v1/n/tracks/visibleChanged",e)}),dojo.subscribe("/jbrowse/v1/n/navigate",function(e){console.log("Event: /jbrowse/v1/n/navigate",e)}),dojo.subscribe("/jbrowse/v1/n/globalHighlightChanged",function(e){console.log("Event: /jbrowse/v1/n/globalHighlightChanged",e)}),dojo.subscribe("/jbrowse/v1/n/tracks/redraw",function(e){console.log("Event: /jbrowse/v1/n/tracks/redraw",e)}),dojo.subscribe("/jbrowse/v1/n/tracks/redrawFinished",function(e){console.log("Event: /jbrowse/v1/n/tracks/redrawFinished",e)}),dojo.subscribe("/jbrowse/v1/n/tracks/focus",function(e){console.log("Event: /jbrowse/v1/n/tracks/focus",e)}),dojo.subscribe("/jbrowse/v1/n/tracks/unfocus",function(e){console.log("Event: /jbrowse/v1/n/tracks/unfocus",e)})}})}.apply(null,n))||(e.exports=r)},564:function(e,t,i){var n,r;n=[i(575),i(458)],void 0===(r=function(e,t){return e([t],{})}.apply(null,n))||(e.exports=r)},565:function(e,t,i){var n,r;n=[i(575),i(576),i(689),i(334),i(459)],void 0===(r=function(e,t,i,n){return n.dojof,e("ComboTrackSelector.View.TrackList.Faceted",JBrowse.View.TrackList.Faceted,{renderInitial:function(){dojo.query("#hierarchicalTrackPane .header").style("margin-bottom","5em"),this.containerElem=dojo.create("div",{id:"faceted_tracksel",className:"jbrowse",style:{left:"-95%",width:"95%",zIndex:500}},document.body),dojo.create("div",{className:"faceted_track_header",innerHTML:"<div>Tracks Available in Faceted List</div>"},this.containerElem);var e=this.config.title.join("<br>"),i="<div></div>";void 0!==this.config.icon?i='</div><img width="20px" src="'+this.config.icon+'"><div>':void 0!==this.browser.config.combotracksel_icon&&(i='</div><img width="20px" src="'+this.browser.config.combotracksel_icon+'"><div>'),dojo.create("div",{className:"faceted_tracksel_on_off tab",innerHTML:i+e+'</div><img src="'+this.browser.resolveUrl("img/right_arrow.png")+'">'},this.containerElem),this.mainContainer=new dijit.layout.BorderContainer({design:"headline",gutters:!1},dojo.create("div",{className:"mainContainer"},this.containerElem)),this.topPane=new dijit.layout.ContentPane({region:"top",id:"faceted_tracksel_top",content:'<div class="title">Select Tracks</div> <div class="topLink" style="cursor: help"><a title="Track selector help">Help</a></div>'}),dojo.query('div.topLink a[title="Track selector help"]',this.topPane.domNode).forEach(function(e){var t=new dijit.Dialog({class:"jbrowse help_dialog",refocus:!1,draggable:!1,title:"Track Selection",content:'<div class="main"><p>The JBrowse Faceted Track Selector makes it easy to search through large numbers of available tracks to find exactly the ones you want. You can incrementally filter the track display to narrow it down to those your are interested in.  There are two types of filtering available, which can be used together: <b>filtering with data fields</b>, and free-form <b>filtering with text</b>.</p>  <dl><dt>Filtering with Data Fields</dt>  <dd>The left column of the display contains the available <b>data fields</b>.  Click on the data field name to expand it, and then select one or more values for that field.  This narrows the search to display only tracks that have one of those values for that field.  You can do this for any number of fields.<dd>  <dt>Filtering with Text</dt>  <dd>Type text in the "Contains text" box to filter for tracks whose data contains that text.  If you type multiple words, tracks are filtered such that they must contain all of those words, in any order.  Placing "quotation marks" around the text filters for tracks that contain that phrase exactly.  All text matching is case insensitive.</dd>  <dt>Activating Tracks</dt>  <dd>To activate and deactivate a track, click its check-box in the left-most column.  When the box contains a check mark, the track is activated.  You can also turn whole groups of tracks on and off using the check-box in the table heading.</dd>  </dl></div>'});dojo.connect(e,"onclick",this,function(e){return t.show(),!1})},this),this.mainContainer.addChild(this.topPane),dojo.query(".faceted_tracksel_on_off").onclick(t.hitch(this,"toggle")),this.centerPane=new dijit.layout.BorderContainer({region:"center",class:"gridPane",gutters:!1}),this.mainContainer.addChild(this.centerPane);var n=this.renderTextFilter();this.busyIndicator=dojo.create("div",{innerHTML:'<img src="'+this.browser.resolveUrl("img/spinner.gif")+'">',className:"busy_indicator"},this.containerElem),this.centerPane.addChild(new dijit.layout.ContentPane({region:"top",class:"gridControls",content:[dojo.create("button",{className:"faceted_tracksel_on_off",innerHTML:'<img src="'+this.browser.resolveUrl("img/left_arrow.png")+'"> <div>Back to browser</div>',onclick:t.hitch(this,"hide")}),dojo.create("button",{className:"clear_filters",innerHTML:'<img src="'+this.browser.resolveUrl("img/red_x.png")+'"><div>Clear All Filters</div>',onclick:t.hitch(this,function(e){this._clearTextFilterControl(),this._clearAllFacetControls(),this._async(function(){this.updateQuery(),this._updateFacetCounts()},this).call()})}),this.busyIndicator,n,dojo.create("div",{className:"matching_record_count"})]}))}})}.apply(null,n))||(e.exports=r)},566:function(e,t,i){var n,r;n=[i(575),i(576),i(587),i(577),i(574),i(344),i(382),i(341)],void 0===(r=function(e,t,n,r,o,a,s){return e(a,{constructor:function(e){console.log("Loaded ComboTrackSelector plugin");var i=this;new s({bootConfig:i.config2,defaults:i._configDefaults(),browser:i}).getFinalConfig().then(dojo.hitch(i,function(e){i.config2=e})),this.browser.afterMilestone("loadRefSeqs",dojo.hitch(this,function(){i.createNewTrackList(i.config2).then(t.hitch(this,function(){i.initTrackMetadata(i.config2),i._addTrackConfigs(i.config2),this.browser.config.stores=dojo.mixin(this.browser.config.stores,i.config2.stores),this.browser.config.tracks=dojo.mixin(this.browser.config.tracks,i.config2.tracks),this.browser.trackConfigsByName=dojo.mixin(this.browser.trackConfigsByName,i.trackConfigsByName),void 0!==e.icon&&(this.browser.config.combotracksel_icon=e.icon),this.browser.containerWidget.startup(),this.browser.onResize()}))}))},createNewTrackList:function(e){return e=t.clone(e),this.browser._milestoneFunction("createTrack",function(n){var r=this.config.show_tracklist?"Faceted":"Null";/\//.test(r)||(r="ComboTrackSelector/View/TrackList/"+r),Promise.resolve().then(function(){var i=[require(r,null,!1)];t.hitch(this,function(i){this.trackListView=new i(t.mixin(t.clone(e.trackSelector)||{},{trackConfigs:e.tracks,browser:this,trackMetaData:this.trackMetaDataStore})),this.subscribe("/jbrowse/v1/n/tracks/visibleChanged",dojo.hitch(this,function(){this.cookie("tracks",this.view.visibleTrackNames().join(","),{expires:60})})),n.resolve({success:!0})}).apply(null,i)}.bind(this)).catch(i.oe)})},_configDefaults:function(){return{tracks:[],containerID:"GenomeBrowser",dataRoot:o.queryToObject(window.location.search.slice(1)).data||"data",show_tracklist:!0,show_nav:!0,show_overview:!0,refSeqs:"{dataRoot}/seq/refSeqs.json",include:["{dataRoot}/trackList2.json"],nameUrl:"{dataRoot}/names/root.json",datasets:{_DEFAULT_EXAMPLES:!0,volvox:{url:"?data=sample_data/json/volvox",name:"Volvox Example"},modencode:{url:"?data=sample_data/json/modencode",name:"MODEncode Example"},yeast:{url:"?data=sample_data/json/yeast",name:"Yeast Example"}},highlightSearchedRegions:!1,highResolutionMode:"disabled"}},_addTrackConfigs:function(e){var i=(e=t.clone(e)).tracks||[];return e.tracks||(e.tracks=[]),this.trackConfigsByName||(this.trackConfigsByName={}),r.forEach(i,function(t){this.trackConfigsByName[t.label]=t,e.tracks.push(t)},this),i},initTrackMetadata:function(e){return e=t.clone(e),this.browser._milestoneFunction("initTrackMetadata",function(t){var i=dojo.map((e.trackMetadata||{}).sources||[],function(e){var t=e.url||"trackMeta.csv",i=e.type||(/\.csv$/i.test(t)?"csv":/\.js(on)?$/i.test(t)?"json":"csv"),n=e.class||{csv:"dojox/data/CsvStore",json:"dojox/data/JsonRestStore"}[i];return n?{class_:n,url:t}:(console.error("No store class found for type '"+i+"', cannot load track metadata from URL "+t),null)});require(Array.prototype.concat.apply(["JBrowse/Store/TrackMetaData"],dojo.map(i,function(e){return e.class_})),dojo.hitch(this,function(n){for(var r=[],o=1;o<arguments.length;o++)r.push(new arguments[o]({url:i[o-1].url}));this.trackMetaDataStore=new n(dojo.mixin(dojo.clone(e.trackMetadata||{}),{trackConfigs:e.tracks,browser:this,metadataStores:r})),t.resolve({success:!0})}))})}})}.apply(null,n))||(e.exports=r)},567:function(e,t,i){var n,r;n=[i(575),i(576),i(587),i(344),i(334)],void 0===(r=function(e,t,i,n,r){return e(n,{constructor:function(e){console.log("plugin: CategoryUrl");var t=this;this.browser.oldShowTracks=this.browser.showTracks,this.browser.showTracks=function(e){var i=0,n=t.browser.config.tracks,o=t.getUrlParam("cat");if(null!=o){for(var a=o.split("/"),s=0;s<a.length;s++)a[s]=a[s].replace(/^[ ]+|[ ]+$/g,"");i=a.length}if(i){for(s=0;s<n.length;s++){var l=[],c=0;if(void 0!==n[s].metadata&&void 0!==n[s].metadata.category&&(c=(l=n[s].metadata.category.split("/")).length),void 0!==n[s].category&&(c=(l=n[s].category.split("/")).length),i<=c){for(var h=0;h<l.length;h++)l[h]=l[h].replace(/^[ ]+|[ ]+$/g,"");var 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