ari-map.yml

---
# These aren't needed, they're said correctly. Acronyms work fine.
#CMVFS: C V M F S
#IDC: I D C
# However if the usage is ever lowercase, it'll attempt to pronounce it directly
bwa: BWA
# And for some you'll need to separate the letter part vs pronounced part
BWA-MEM: BWA mem
'usegalaxy.*': usegalaxy dot star
gxadmin: GX admin
nginx: engine X
systemd: system D
/etc: / E T C
systemctl: system C T L
cgroup: C group
cgroups: C groups
telegraf: telegraph
sqlite: SQL light
SQLAlchemy: SQL alchemy
fastqc: fast QC
ntpdate: NTP date
RedHat: Red Hat
ATAC-Seq: ATAC Seq
Tn5: T N five
paired-end: paired end
# For some reason moz-tts doesn't pronounce right in a sentence unless it's
# lowercase. This gives parity with AWS
RAM: ram
uWSGI: "you whiskey"
GIL: gill
DRMAA: drama
hisat2: high sat 2
Node.js: node JS
db-skip-locked: DB skip locked
REST: rest
FASTQ: fast Q
scRNA-seq: S C RNA seq
scRNA: S C RNA
rRNA: R RNA
RNAmmer: RNA mer
Rfam: R fam
Pfam: P fam
m/z: MZ
'>': greater than sign
b-ions: B ions
y-ions: Y ions
MSstats: MS stats
LC-MS/MS: LC MS MS
topN: top N
miRNA: micro RNA
miRNAs: micro RNAs
mRNA: m RNA
mRNAs: m RNAs
FastQC: fast QC
MultiQC: multi QC
DESeq2: D E Seq 2
TargetFinder: target finder
MiRDeep2: mir deep 2
cutadapt: cut adapt
MAGeCK: magic
b': b prime
e': e prime
/: forward slash
Pangeo: pan geo
netCDF: net C D F
TIaaS: tea ahs
TeSS: tess
FAIR: fair
ARC: arc
ARCs: arcs
DataPLANT: data plant
ISA: is a
DataHUB: data hub
GEO: geo
nfdi4plants.org: NFDI for plants dot org