Book a Demo!
CoCalc Logo Icon
StoreFeaturesDocsShareSupportNewsAboutPoliciesSign UpSign In
galaxyproject
GitHub Repository: galaxyproject/training-material
 Path: blob/main/bin/knit-automated.sh
1677 views
1
#!/bin/bash

2
DIR=/tmp/git-gat

3
op="$1"

4


5
declare -a tutorials

6
tutorials=(admin/ansible-galaxy admin/backup-cleanup admin/customization admin/tus admin/cvmfs admin/apptainer admin/tool-management admin/data-library admin/connect-to-compute-cluster admin/job-destinations admin/pulsar admin/celery admin/reports admin/monitoring admin/tiaas admin/sentry admin/ftp admin/beacon)

7
#tutorials=(admin/wireguard-headscale)

8
#tutorials=(admin/wireguard)

9


10
#echo "${tutorials[0]}"

11
#exit 1;

12
if [[ "$op" == "export" ]]; then

13
	rm -rf "${DIR}"

14
	mkdir -p "${DIR}"

15
	mkdir -p "${DIR}/.scripts"

16


17
	# Setup readme as the root commit

18


19
	cat > ${DIR}/0-commit-0000-root-commit.patch <<-EOF

20
		From: The Galaxy Training Network <[email protected]>

21
		Date: Mon, 15 Feb 2021 14:06:56 +0100

22
		Subject: admin/init/0000: Root commit

23


24


25
		--- /dev/null

26
		+++ b/readme.md

27
		@@ -0,0 +1,11 @@

28
		+# GIT-GAT

29
		+

30
		+This is a git repository with the current <abbr title="Galaxy Admin Training">GAT</abbr> history. See the current [GAT schedule](https://gxy.io/gat).

31
		+

32
		+This is built from [the GTN's library of admin training](https://training.galaxyproject.org/training-material/topics/admin/)

33
		+

34
		+Extra | Data

35
		+--- | ---

36
		+Date | $(date --rfc-3339=seconds)

37
		+Github Run ID | [$GITHUB_RUN_ID](https://github.com/galaxyproject/training-material/actions/runs/$GITHUB_RUN_ID)

38
		+GTN Commit | [$GITHUB_SHA](https://github.com/galaxyproject/training-material/tree/$GITHUB_SHA)

39
		--

40
		2.25.1

41
	EOF

42


43


44
	# Then do the rest

45
	for idx in "${!tutorials[@]}"; do

46
		echo "Processing ${tutorials[$idx]}"

47
		folder=$(echo "${tutorials[$idx]}" | cut -d / -f 1)

48
		tuto=$(echo "${tutorials[$idx]}" | cut -d / -f 2)

49


50
		python3 bin/knit-frog.py \

51
			topics/${folder}/tutorials/${tuto}/tutorial.md \

52
			${DIR}/$(( idx + 10 ))-${tuto};

53
	done

54
elif [[ "$op" == "import" ]]; then

55
	if [[ ! -d "${DIR}" ]]; then

56
		echo "Error, ${DIR} is missing"

57
		exit 1

58
	fi

59


60
	# Store current dir

61
	CURRENT_DIR=$(pwd)

62
	cd "${DIR}" || exit

63


64
	# Export root commit

65
	root_commit=$(git log --pretty=oneline | tail -n 1 | cut -f1 -d' ')

66
	# Export everything BUT the root commit

67
	git format-patch "${root_commit}..HEAD"

68


69
	# Go back

70
	cd "${CURRENT_DIR}" || exit

71


72
	# Import all of the patches

73
	for idx in "${!tutorials[@]}"; do

74
		folder=$(echo "${tutorials[$idx]}" | cut -d / -f 1)

75
		tuto=$(echo "${tutorials[$idx]}" | cut -d / -f 2)

76


77
		python3 bin/knit.py \

78
			topics/${folder}/tutorials/${tuto}/tutorial.md \

79
			--patches ${DIR}/*${folder}-${tuto}*.patch

80
	done

81
elif [[ "$op" == "deploy" ]]; then

82
	if [[ ! -d "${DIR}" ]]; then

83
		echo "Error, ${DIR} is missing"

84
		exit 1

85
	fi

86


87
	cd ${DIR} || exit

88
	git init && \

89
		git add .scripts/

90
		git commit -a -m 'Add scripts directory'

91
		git am -3 -- *.patch && \

92
		git remote add origin [email protected]:hexylena/git-gat.git && \

93
		git push -f origin

94
elif [[ "$op" == "roundtrip" ]]; then

95
	rm -rf ${DIR}

96
	bash $0 export

97
	cd ${DIR} || exit

98
	git init && git config --local --add commit.gpgsign false && \

99
		git am -3 -C2 -- *.patch

100
	cd -

101
	bash $0 import

102
elif [[ "$op" == "check-offsets" ]]; then

103
	for idx in "${!tutorials[@]}"; do

104
		folder=$(echo "${tutorials[$idx]}" | cut -d / -f 1)

105
		tuto=$(echo "${tutorials[$idx]}" | cut -d / -f 2)

106
		n2=$(( idx + 1 ))

107
		echo $idx $folder $tuto = $n2 

108
		grep "snippet topics/admin/faqs/missed-something.md step=$n2" topics/${folder}/tutorials/${tuto}/tutorial.md -q

109
		if (( $? != 0 )); then

110
			echo "Error, topics/${folder}/tutorials/${tuto}/tutorial.md is missing a snippet for step $n2"

111
			#exit 1

112
		fi

113
		#vim topics/${folder}/tutorials/${tuto}/tutorial.md

114
	done

115
elif [[ "$op" == "fix-offsets" ]]; then

116
	for idx in "${!tutorials[@]}"; do

117
		folder=$(echo "${tutorials[$idx]}" | cut -d / -f 1)

118
		tuto=$(echo "${tutorials[$idx]}" | cut -d / -f 2)

119
		n2=$(( idx + 1 ))

120
		echo -n "$folder/$tuto should be $n2 "

121
		grep "snippet topics/admin/faqs/missed-something.md step=$n2" topics/${folder}/tutorials/${tuto}/tutorial.md -q

122
		if (( $? != 0 )); then

123
			echo "Fixed!"

124
			sed -i -r 's|topics/admin/faqs/missed-something.md step=[0-9]+|topics/admin/faqs/missed-something.md step='$n2'|' topics/${folder}/tutorials/${tuto}/tutorial.md

125
		else

126
			echo "Already correct"

127
		fi

128
		#vim topics/${folder}/tutorials/${tuto}/tutorial.md

129
	done

130
elif [[ "$op" == "edit" ]]; then

131
	files=""

132
	for idx in "${!tutorials[@]}"; do

133
		folder=$(echo "${tutorials[$idx]}" | cut -d / -f 1)

134
		tuto=$(echo "${tutorials[$idx]}" | cut -d / -f 2)

135
		files="$files topics/${folder}/tutorials/${tuto}/tutorial.md"

136
	done

137
	$EDITOR $files

138
else

139
	echo "$0 <import|export|deploy|roundtrip|check-offsets|fix-offsets|edit>"

140
	exit 1;

141
fi

142


143


144


145