gta2024-transcriptomics.md

---

layout: event-track

title: Transcriptomics
description: Welcome to the transcriptomics track. Here you can learn how to map the raw RNA-seq sequencing data to a reference, preform an differential expression analysis, GO analysis. Further you can learn how to plot your processed data. Additionally you can also learn how to perform a differential Isofrom expression analysis, as well as how to annotate lncRNAs. If you want to learn more in the field of transciptomics please also have a look at the single cell track. Start with the tutorial at your own pace. If you need support contact us via the Slack Channel [gta_transcriptomics](https://gtnsmrgsbord.slack.com/archives/C07NGRVEG8J).

slack_channel: gta_transcriptomics

contributions:
    organisers:
        - teresa-m
    instructors:
        - erxleben
        - annasyme
        - abretaud
        - Nilchia
        - dianichj
        - deeptivarshney
        - GarethPrice-Aus
        - igormakunin
        - lldelisle
        - MarisaJL
        - meltemktn
        - pavanvidem
        - rlibouba
        - SaimMomin12
        - stephanierobin
        - teresa-m
        - tcollins2011


program:
  - section: "Transcriptomics introduction" 
    description: |
      If you are new to transcriptomics please start with the following tutorials. If you encounter any issue please ask us on Slack.  
    tutorials:
      - name: introduction
        topic: transcriptomics
      - name: ref-based
        topic: transcriptomics
      - name: rna-seq-viz-with-volcanoplot
        topic: transcriptomics
  - section: "Advanced analysis" 
    description: |
      Here are some more advanced tutorials you can follow if you like. If you encounter any issue please ask us on Slack.  
    tutorials:
      - name: differential-isoform-expression
        topic: transcriptomics
      - name: lncrna
        topic: genome-annotation

---