gta2025-proteomics.md

---

layout: event-track

title: Proteomics
description: Learn all about proteomics and how to analyze data in Galaxy. Start with the tutorial at your own pace. If you need support contact us via the Slack Channel [gta_proteomics](https://gtnsmrgsbord.slack.com/channels/{{page.slack_channel}}).

slack_channel: gta_proteomics

contributions:
    organisers:
        - pratikdjagtap
        - foellmelanie
        - subinamehta
        - timothygriffin
    instructors:
        - annasyme
        - delphine-l
        - foellmelanie
        - jennaj
        - bernt-matthias
        - pratikdjagtap
        - subinamehta
        - timothygriffin



program:
  - section: "Introduction"
    description: |
      If you encounter any issue please ask us on Slack.
    tutorials:
      - name: introduction
        topic: proteomics
      - name: maxquant-msstats-dda-lfq
        topic: proteomics

  - section: "Advanced analysis"
    description: |
      If you encounter any issue please ask us on Slack.
    tutorials:
      - name: encyclopedia
        topic: proteomics
      - name: proteogenomics-dbcreation
        topic: proteomics
      - name: proteogenomics-dbsearch
        topic: proteomics
      - name: proteogenomics-novel-peptide-analysis
        topic: proteomics
      - name: metaproteomics
        topic: proteomics


  - section: "Clinical Metaproteomics"
    description: |
      This learning path aims to teach you the basics of how to perform metaproteomics analysis of the clinical data within the Galaxy platform. You will learn how to use Galaxy for analysis and will be guided through the most common first steps of any metaproteomics database generation to searching the database, verifying the proteins/peptides, and data analysis. If you encounter any issue please ask us on Slack.
    tracks:
    - title: Clinical metaproteomics workflows
      link: learning-pathways/clinical-metaproteomics.md

---