CoCalc -- module

GitHub Repository: sagemath/sagelib
Path: blob/master/module_list.py
²⁶⁰⁹ views
1
#!/usr/bin/env python
2

3
import os, sys
4
from distutils.core import setup
5
from distutils.extension import Extension
6

7

8
#########################################################
9
### Configure SAGE_ROOT
10
#########################################################
11

12
if not os.environ.has_key('SAGE_ROOT'):
13
    print "    ERROR: The environment variable SAGE_ROOT must be defined."
14
    sys.exit(1)
15
else:
16
    SAGE_ROOT  = os.environ['SAGE_ROOT']
17
    SAGE_LOCAL = SAGE_ROOT + '/local'
18
    SAGE_DEVEL = SAGE_ROOT + '/devel'
19
    SAGE_INC = SAGE_LOCAL + '/include/'
20

21

22
#########################################################
23
### BLAS setup
24
#########################################################
25

26
## Choose cblas library -- note -- make sure to update sage/misc/cython.py
27
## if you change this!! 
28
if os.environ.has_key('SAGE_BLAS'):
29
    BLAS=os.environ['SAGE_BLAS']
30
    BLAS2=os.environ['SAGE_BLAS']
31
elif os.path.exists('%s/lib/libatlas.so'%os.environ['SAGE_LOCAL']):   
32
    BLAS='cblas'
33
    BLAS2='atlas'
34
elif os.path.exists('/usr/lib/libcblas.dylib') or \
35
     os.path.exists('/usr/lib/libcblas.so'):
36
    BLAS='cblas'
37
    BLAS2='atlas'
38
elif os.path.exists('/usr/lib/libblas.dll.a'):   
39
    BLAS='gslcblas'
40
    BLAS2='gslcblas'
41
else:
42
    # This is very slow  (?), but *guaranteed* to be available. 
43
    BLAS='gslcblas' 
44
    BLAS2='gslcblas'
45

46

47
#########################################################
48
### Commonly used definitions
49
#########################################################
50

51
numpy_include_dirs = [SAGE_LOCAL + '/lib/python/site-packages/numpy/core/include']
52
# We pick a file from numpy which is autogenerated so it has the
53
# timestamp of the numpy build.
54
numpy_depends = [SAGE_LOCAL + '/lib/python/site-packages/numpy/core/include/numpy/_numpyconfig.h']
55

56
flint_depends = [SAGE_INC + 'FLINT/flint.h']
57
singular_depends = [SAGE_INC + 'libsingular.h', SAGE_INC + 'givaro/givconfig.h']
58
ginac_depends = [SAGE_INC + 'pynac/ginac.h']
59

60
#########################################################
61
### M4RI flags
62
#########################################################
63

64
import ast
65
m4ri_extra_compile_args = []
66
for line in open(SAGE_INC + "m4ri/m4ri_config.h"):
67
    if not line.startswith("#define __M4RI_SIMD_CFLAGS"):
68
        continue
69
    m4ri_sse2_cflags = ast.literal_eval(line[len("#define __M4RI_SIMD_CFLAGS"):].strip())
70
    m4ri_extra_compile_args = [flag.strip() for flag in m4ri_sse2_cflags.split(" ") if flag.strip()]
71
    break
72

73
singular_libs = ['m', 'readline', 'singular', 'givaro', 'ntl', 'gmpxx', 'gmp']
74

75
#########################################################
76
### PolyBoRi defines
77
#########################################################
78

79
polybori_extra_compile_args = []
80
for line in open(SAGE_LOCAL + "/share/polybori/flags.conf"):
81
    if not line.startswith("CPPDEFINES"):
82
        continue
83
    polybori_extra_compile_args = ["-D"+e for e in ast.literal_eval(line[len("CPPDEFINES = "):])]
84
    break
85

86

87
#############################################################
88
### List of modules
89
###
90
### Note that the list of modules is sorted alphabetically
91
### by extension name. Please keep this list sorted when
92
### adding new modules!
93
###
94
#############################################################
95

96
def uname_specific(name, value, alternative):
97
    if name in os.uname()[0]:
98
        return value
99
    else:
100
        return alternative
101

102
ext_modules = [
103
    
104
    ################################
105
    ##
106
    ## sage.algebras
107
    ##
108
    ################################
109

110
    Extension('sage.algebras.quatalg.quaternion_algebra_element',
111
               sources = ['sage/algebras/quatalg/quaternion_algebra_element.pyx'],
112
               language='c++',
113
               libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++", "ntl"],
114
               include_dirs = [SAGE_INC + 'FLINT/'],
115
               depends = flint_depends),
116

117
    Extension('sage.algebras.quatalg.quaternion_algebra_cython',
118
               sources = ['sage/algebras/quatalg/quaternion_algebra_cython.pyx'],
119
               language='c++',
120
               libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++", "ntl"]),
121

122
    ################################
123
    ## 
124
    ## sage.calculus
125
    ##
126
    ################################
127
    
128
    Extension('sage.calculus.var',
129
              sources = ['sage/calculus/var.pyx']),
130

131
    Extension('sage.calculus.riemann',
132
              sources = ['sage/calculus/riemann.pyx'],
133
              include_dirs = numpy_include_dirs,
134
              depends = numpy_depends),
135

136
    Extension('sage.calculus.interpolators',
137
              sources = ['sage/calculus/interpolators.pyx'],
138
              include_dirs = numpy_include_dirs,
139
              depends = numpy_depends),
140

141

142
    ################################
143
    ## 
144
    ## sage.categories
145
    ##
146
    ################################
147

148
    Extension('sage.categories.action',
149
              sources = ['sage/categories/action.pyx']),
150

151
    Extension('sage.categories.category_singleton',
152
              sources = ['sage/categories/category_singleton.pyx']),
153

154
    Extension('sage.categories.functor',
155
              sources = ['sage/categories/functor.pyx']),
156
              
157
    Extension('sage.categories.map',
158
              sources = ['sage/categories/map.pyx']),
159
              
160
    Extension('sage.categories.morphism',
161
              sources = ['sage/categories/morphism.pyx']),
162

163
    Extension('sage.categories.examples.semigroups_cython',
164
              sources = ['sage/categories/examples/semigroups_cython.pyx']),
165

166
    ################################
167
    ## 
168
    ## sage.coding
169
    ##
170
    ################################
171

172
    Extension('sage.coding.binary_code',
173
              sources = ['sage/coding/binary_code.pyx']),
174

175
    ################################
176
    ## 
177
    ## sage.combinat
178
    ##
179
    ################################
180

181
    Extension('sage.combinat.expnums',
182
              sources = ['sage/combinat/expnums.pyx'],
183
              libraries = ['gmp']),
184
                            
185
    Extension('sage.combinat.matrices.dancing_links',
186
              sources = ['sage/combinat/matrices/dancing_links.pyx'],
187
              libraries = ["stdc++"],
188
              language='c++'),
189

190
    Extension('sage.structure.list_clone',
191
              sources=['sage/structure/list_clone.pyx']),
192

193
    Extension('sage.structure.list_clone_timings_cy',
194
              sources=['sage/structure/list_clone_timings_cy.pyx']),
195

196
    Extension('sage.sets.finite_set_map_cy',
197
              sources=['sage/sets/finite_set_map_cy.pyx']),
198

199
    Extension('sage.combinat.partitions',
200
              sources = ['sage/combinat/partitions.pyx',
201
                         'sage/combinat/partitions_c.cc'],
202
              libraries = ['gmp', 'mpfr'],
203
              depends = ['sage/combinat/partitions_c.h'],
204
              language='c++'),
205

206
    Extension('sage.combinat.words.word_datatypes',
207
            sources=['sage/combinat/words/word_datatypes.pyx'],
208
            include_dirs = ['sage/combinat/words'],
209
            libraries = ['stdc++'],
210
            language='c++'),
211

212
    Extension('sage.combinat.permutation_cython',
213
              sources=['sage/combinat/permutation_cython.pyx']),
214

215
    Extension('sage.combinat.dict_addition',
216
              sources=['sage/combinat/dict_addition.pyx']),
217

218
    Extension('sage.combinat.debruijn_sequence',
219
              sources=['sage/combinat/debruijn_sequence.pyx']),
220

221
    Extension('sage.combinat.degree_sequences',
222
              sources = ['sage/combinat/degree_sequences.pyx']),
223

224
    Extension('sage.combinat.combinat_cython',
225
              sources=['sage/combinat/combinat_cython.pyx'],
226
              libraries=['gmp']),
227

228
    Extension('sage.combinat.enumeration_mod_permgroup',
229
              sources=['sage/combinat/enumeration_mod_permgroup.pyx']),
230

231
    ################################
232
    ## 
233
    ## sage.crypto
234
    ##
235
    ################################
236

237
    Extension('sage.crypto.boolean_function',
238
              sources = ['sage/crypto/boolean_function.pyx']),
239

240
    ################################
241
    ## 
242
    ## sage.ext
243
    ##
244
    ################################
245

246
    Extension('sage.ext.c_lib',
247
              sources = ['sage/ext/c_lib.pyx']),
248
    
249
    Extension('sage.ext.fast_callable',
250
              sources = ['sage/ext/fast_callable.pyx']),
251
    
252
    Extension('sage.ext.fast_eval',
253
              sources = ['sage/ext/fast_eval.pyx']),
254
    
255
    Extension('sage.ext.interactive_constructors_c',
256
              sources = ['sage/ext/interactive_constructors_c.pyx']),
257
    
258
    Extension('sage.ext.multi_modular',
259
              sources = ['sage/ext/multi_modular.pyx'],
260
              extra_compile_args = ['-std=c99'],
261
              libraries=['gmp']), 
262

263
    ################################
264
    ## 
265
    ## sage.finance
266
    ##
267
    ################################
268

269
    Extension('sage.finance.fractal',
270
              sources = ['sage/finance/fractal.pyx'],
271
              depends = numpy_depends),
272
    
273
    Extension('sage.finance.markov_multifractal_cython',
274
              sources = ['sage/finance/markov_multifractal_cython.pyx']),
275

276
    Extension('sage.finance.time_series',
277
              sources = ['sage/finance/time_series.pyx'],
278
              include_dirs = numpy_include_dirs,
279
              depends = numpy_depends),
280

281

282
    ################################
283
    ## 
284
    ## sage.functions 
285
    ## 
286
    ################################ 
287
    
288
    Extension('sage.functions.prime_pi', 
289
        sources = ['sage/functions/prime_pi.pyx']), 
290
    
291
     ################################
292
     ##
293
     ## sage.games
294
     ##
295
     ################################
296

297
     Extension('sage.games.sudoku_backtrack',
298
               sources = ['sage/games/sudoku_backtrack.pyx']),
299

300
     ################################
301
     ##
302
     ## sage.geometry
303
     ##
304
     ################################
305

306
     Extension('sage.geometry.point_collection',
307
               sources = ['sage/geometry/point_collection.pyx']),
308

309
     Extension('sage.geometry.toric_lattice_element',
310
               sources = ['sage/geometry/toric_lattice_element.pyx'],
311
               libraries=['gmp']),
312

313
     Extension('sage.geometry.integral_points',
314
               sources = ['sage/geometry/integral_points.pyx']),
315

316
     Extension('sage.geometry.triangulation.base',
317
               sources = ['sage/geometry/triangulation/functions.cc',
318
                          'sage/geometry/triangulation/data.cc',
319
                          'sage/geometry/triangulation/base.pyx', 
320
                          'sage/geometry/triangulation/triangulations.cc'],
321
               language="c++"),
322

323
    ################################
324
    ##
325
    ## sage.graphs
326
    ##
327
    ################################
328

329
    Extension('sage.graphs.chrompoly',
330
              sources = ['sage/graphs/chrompoly.pyx'],
331
              libraries = ['gmp']),
332

333
    Extension('sage.graphs.cliquer',
334
              sources = ['sage/graphs/cliquer.pyx'],
335
              libraries = ['cliquer']),
336

337

338
    Extension('sage.graphs.graph_decompositions.vertex_separation',
339
              sources = ['sage/graphs/graph_decompositions/vertex_separation.pyx']),
340

341
    Extension('sage.graphs.convexity_properties',
342
              sources = ['sage/graphs/convexity_properties.pyx']),
343

344
    Extension('sage.graphs.comparability',
345
              sources = ['sage/graphs/comparability.pyx']),
346

347
    Extension('sage.graphs.generic_graph_pyx',
348
              sources = ['sage/graphs/generic_graph_pyx.pyx'],
349
              libraries = ['gmp']),
350

351
    Extension('sage.graphs.graph_generators_pyx',
352
              sources = ['sage/graphs/graph_generators_pyx.pyx']),
353

354
    Extension('sage.graphs.distances_all_pairs',
355
              sources = ['sage/graphs/distances_all_pairs.pyx']),
356

357
    Extension('sage.graphs.base.static_sparse_graph',
358
              sources = ['sage/graphs/base/static_sparse_graph.pyx']),
359

360
    Extension('sage.graphs.modular_decomposition.modular_decomposition',
361
              sources = ['sage/graphs/modular_decomposition/modular_decomposition.pyx'],
362
              depends = ['sage/graphs/modular_decomposition/src/dm.c',
363
                         'sage/graphs/modular_decomposition/src/dm_english.h']),
364

365
    Extension('sage.graphs.matchpoly',
366
              sources = ['sage/graphs/matchpoly.pyx'],
367
              libraries = ['gmp', 'flint'],
368
              include_dirs = [SAGE_INC + 'FLINT/'],
369
              extra_compile_args = ['-std=c99'],
370
              depends = flint_depends),
371

372
    Extension('sage.graphs.planarity',
373
              sources = ['sage/graphs/planarity/graphColorVertices.c',
374
                         'sage/graphs/planarity/graphColorVertices_Extensions.c',
375
                         'sage/graphs/planarity/graphDrawPlanar.c',
376
                         'sage/graphs/planarity/graphDrawPlanar_Extensions.c',
377
                         'sage/graphs/planarity/graphEmbed.c',
378
                         'sage/graphs/planarity/graphExtensions.c',
379
                         'sage/graphs/planarity/graphIO.c',
380
                         'sage/graphs/planarity/graphIsolator.c',
381
                         'sage/graphs/planarity/graphK23Search.c',
382
                         'sage/graphs/planarity/graphK23Search_Extensions.c',
383
                         'sage/graphs/planarity/graphK33Search.c',
384
                         'sage/graphs/planarity/graphK33Search_Extensions.c',
385
                         'sage/graphs/planarity/graphK4Search.c',
386
                         'sage/graphs/planarity/graphK4Search_Extensions.c',
387
                         'sage/graphs/planarity/graphNonplanar.c',
388
                         'sage/graphs/planarity/graphOuterplanarObstruction.c',
389
                         'sage/graphs/planarity/graphPreprocess.c',
390
                         'sage/graphs/planarity/graphTests.c',
391
                         'sage/graphs/planarity/graphUtils.c',
392
                         'sage/graphs/planarity/listcoll.c',
393
                         'sage/graphs/planarity/planarity.c',
394
                         'sage/graphs/planarity/planarityCommandLine.c',
395
                         'sage/graphs/planarity/planarityRandomGraphs.c',
396
                         'sage/graphs/planarity/planaritySpecificGraph.c',
397
                         'sage/graphs/planarity/planarityUtils.c',
398
                         'sage/graphs/planarity/stack.c',
399
                         'sage/graphs/planarity.pyx'],
400
              depends = ['sage/graphs/planarity/appconst.h',
401
                         'sage/graphs/planarity/graphColorVertices.h',
402
                         'sage/graphs/planarity/graphColorVertices.private.h',
403
                         'sage/graphs/planarity/graphDrawPlanar.h',
404
                         'sage/graphs/planarity/graphDrawPlanar.private.h',
405
                         'sage/graphs/planarity/graphExtensions.h',
406
                         'sage/graphs/planarity/graphExtensions.private.h',
407
                         'sage/graphs/planarity/graphFunctionTable.h',
408
                         'sage/graphs/planarity/graph.h',
409
                         'sage/graphs/planarity/graphK23Search.h',
410
                         'sage/graphs/planarity/graphK23Search.private.h',
411
                         'sage/graphs/planarity/graphK33Search.h',
412
                         'sage/graphs/planarity/graphK33Search.private.h',
413
                         'sage/graphs/planarity/graphK4Search.h',
414
                         'sage/graphs/planarity/graphK4Search.private.h',
415
                         'sage/graphs/planarity/graphStructures.h',
416
                         'sage/graphs/planarity/listcoll.h',
417
                         'sage/graphs/planarity/planarity.h',
418
                         'sage/graphs/planarity/platformTime.h',
419
                         'sage/graphs/planarity/stack.h']),
420

421
    Extension('sage.graphs.graph_decompositions.rankwidth',
422
              sources = ['sage/graphs/graph_decompositions/rankwidth.pyx']),
423

424
    Extension('sage.graphs.spanning_tree',
425
              sources = ['sage/graphs/spanning_tree.pyx']),
426

427
    Extension('sage.graphs.trees',
428
              sources = ['sage/graphs/trees.pyx']),
429

430
    Extension('sage.graphs.genus',
431
              sources = ['sage/graphs/genus.pyx']),
432

433
        ################################
434
        ##
435
        ## sage.graphs.base
436
        ## 
437
        ################################
438

439
    Extension('sage.graphs.base.c_graph',
440
              sources = ['sage/graphs/base/c_graph.pyx']),
441

442
    Extension('sage.graphs.base.sparse_graph',
443
              sources = ['sage/graphs/base/sparse_graph.pyx']),
444

445
    Extension('sage.graphs.base.dense_graph',
446
              sources = ['sage/graphs/base/dense_graph.pyx']),
447

448
    ################################
449
    ## 
450
    ## sage.groups
451
    ##
452
    ################################
453

454
    Extension('sage.groups.group',
455
              sources = ['sage/groups/group.pyx']),
456

457
    Extension('sage.groups.perm_gps.permgroup_element',
458
              sources = ['sage/groups/perm_gps/permgroup_element.pyx']),
459

460
        ###################################
461
        ##
462
        ## sage.groups.perm_gps.partn_ref
463
        ## 
464
        ###################################
465
    
466
    Extension('sage.groups.perm_gps.partn_ref.automorphism_group_canonical_label',
467
              sources = ['sage/groups/perm_gps/partn_ref/automorphism_group_canonical_label.pyx'],
468
              libraries = ['gmp', 'flint'],
469
              include_dirs = [SAGE_INC + 'FLINT/'],
470
              extra_compile_args = ['-std=c99'],
471
              depends = flint_depends),
472

473
    Extension('sage.groups.perm_gps.partn_ref.double_coset',
474
              sources = ['sage/groups/perm_gps/partn_ref/double_coset.pyx'],
475
              libraries = ['gmp', 'flint'],
476
              include_dirs = [SAGE_INC + 'FLINT/'],
477
              extra_compile_args = ['-std=c99'],
478
              depends = flint_depends),
479

480
    Extension('sage.groups.perm_gps.partn_ref.refinement_binary',
481
              sources = ['sage/groups/perm_gps/partn_ref/refinement_binary.pyx'],
482
              libraries = ['gmp', 'flint'],
483
              include_dirs = [SAGE_INC + 'FLINT/'],
484
              extra_compile_args = ['-std=c99'],
485
              depends = flint_depends),
486

487
    Extension('sage.groups.perm_gps.partn_ref.refinement_graphs',
488
              sources = ['sage/groups/perm_gps/partn_ref/refinement_graphs.pyx'],
489
              libraries = ['gmp', 'flint'],
490
              include_dirs = [SAGE_INC + 'FLINT/'],
491
              extra_compile_args = ['-std=c99'],
492
              depends = flint_depends),
493

494
    Extension('sage.groups.perm_gps.partn_ref.refinement_lists',
495
              sources = ['sage/groups/perm_gps/partn_ref/refinement_lists.pyx'],
496
              libraries = ['gmp', 'flint'],
497
              include_dirs = [SAGE_INC + 'FLINT/'],
498
              extra_compile_args = ['-std=c99'],
499
              depends = flint_depends),
500

501
    Extension('sage.groups.perm_gps.partn_ref.refinement_matrices',
502
              sources = ['sage/groups/perm_gps/partn_ref/refinement_matrices.pyx'],
503
              libraries = ['gmp', 'flint'],
504
              include_dirs = [SAGE_INC + 'FLINT/'],
505
              extra_compile_args = ['-std=c99'],
506
              depends = flint_depends),
507

508
    Extension('sage.groups.perm_gps.partn_ref.refinement_python',
509
              sources = ['sage/groups/perm_gps/partn_ref/refinement_python.pyx'],
510
              libraries = ['gmp', 'flint'],
511
              include_dirs = [SAGE_INC + 'FLINT/'],
512
              extra_compile_args = ['-std=c99'],
513
              depends = flint_depends),
514

515
    ################################
516
    ## 
517
    ## sage.gsl
518
    ##
519
    ################################
520
    
521
    Extension('sage.gsl.callback',
522
              sources = ['sage/gsl/callback.pyx'],
523
              libraries = ['gsl', BLAS, BLAS2],
524
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
525
    
526
    Extension('sage.gsl.dwt',
527
              sources = ['sage/gsl/dwt.pyx'],
528
              libraries=['gsl',BLAS],
529
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
530

531
    Extension('sage.gsl.fft',
532
              sources = ['sage/gsl/fft.pyx'],
533
              libraries = ['gsl', BLAS, BLAS2],
534
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
535
    
536
    Extension('sage.gsl.gsl_array',
537
              sources = ['sage/gsl/gsl_array.pyx'],
538
              libraries=['gsl', BLAS, BLAS2],
539
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
540
    
541
    Extension('sage.gsl.integration',
542
              sources = ['sage/gsl/integration.pyx'],
543
              define_macros=[('GSL_DISABLE_DEPRECATED','1')],
544
              libraries=['gsl',BLAS, BLAS2]),
545

546
    Extension('sage.gsl.interpolation',
547
              sources = ['sage/gsl/interpolation.pyx'],
548
              libraries = ['gsl', BLAS, BLAS2], 
549
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
550
    
551
    Extension('sage.gsl.ode',
552
              sources = ['sage/gsl/ode.pyx'],
553
              libraries=['gsl',BLAS, BLAS2],
554
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
555
    
556
    Extension('sage.gsl.probability_distribution',
557
              sources = ['sage/gsl/probability_distribution.pyx'],
558
              libraries=['gsl', BLAS, BLAS2],
559
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
560

561
    ################################
562
    ## 
563
    ## sage.interacts
564
    ##
565
    ################################
566

567
    Extension('sage.interacts.library_cython',
568
              sources = ['sage/interacts/library_cython.pyx'],
569
              libraries = []),
570

571
    ################################
572
    ## 
573
    ## sage.libs
574
    ##
575
    ################################
576

577
    Extension('sage.libs.ecl',
578
              sources = ["sage/libs/ecl.pyx"],
579
              libraries = ["ecl"],
580
              include_dirs = [SAGE_INC + 'ecl/'],
581
              depends = [SAGE_INC + 'ecl/ecl.h']),
582

583
    Extension('sage.libs.flint.flint',
584
              sources = ["sage/libs/flint/flint.pyx"],
585
              libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++"],
586
              include_dirs = [SAGE_INC + 'FLINT/'],
587
              extra_compile_args=["-std=c99", "-D_XPG6"],
588
              depends = flint_depends),
589

590
    Extension('sage.libs.flint.fmpz_poly',
591
              sources = ["sage/libs/flint/fmpz_poly.pyx"],
592
              libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++"],
593
              include_dirs = [SAGE_INC + 'FLINT/'],
594
              extra_compile_args=["-std=c99", "-D_XPG6"],
595
              depends = flint_depends),
596
    
597
    Extension('sage.libs.fplll.fplll',
598
              sources = ['sage/libs/fplll/fplll.pyx'],
599
              libraries = ['gmp', 'mpfr', 'stdc++', 'fplll'],
600
              language="c++",
601
              include_dirs = [SAGE_INC + 'fplll'],
602
              depends = [SAGE_INC + "fplll/fplll.h"]),
603

604
    Extension('sage.libs.linbox.linbox',
605
              sources = ['sage/libs/linbox/linbox.pyx'],
606
              # For this to work on cygwin, linboxsage *must* be
607
              # before ntl.
608
              libraries = ['linboxsage', 'ntl', 'linbox', 
609
                           'stdc++', 'givaro', 'gmp', 'gmpxx', BLAS, BLAS2],
610
              language = 'c++',
611
              depends = [SAGE_INC + 'givaro/givconfig.h']),
612

613
    Extension('sage.libs.lcalc.lcalc_Lfunction',
614
              sources = ['sage/libs/lcalc/lcalc_Lfunction.pyx'],
615
              libraries = ['m', 'ntl', 'mpfr', 'gmp', 'gmpxx',
616
                           'Lfunction', 'stdc++'],
617
              include_dirs = [SAGE_INC + "lcalc/"],
618
              extra_compile_args=["-O3", "-ffast-math"],
619
              language = 'c++'),
620
     
621

622
    
623
    Extension('sage.libs.libecm',
624
              sources = ['sage/libs/libecm.pyx'],
625
              libraries = ['ecm', 'gmp'],
626
              extra_link_args = uname_specific("Linux", ["-Wl,-z,noexecstack"],
627
                                                        []),
628
              depends = [SAGE_INC + "ecm.h"]),
629
     
630
    Extension('sage.libs.mwrank.mwrank',
631
              sources = ["sage/libs/mwrank/mwrank.pyx",
632
                         "sage/libs/mwrank/wrap.cc"],
633
              define_macros = [("NTL_ALL",None)],
634
              depends = ["sage/libs/mwrank/wrap.h"] +
635
                        [ SAGE_INC + "eclib/" + h for h in
636
                          ["curve.h","egr.h","descent.h","points.h","isogs.h",
637
                            "marith.h","htconst.h","interface.h"]
638
                        ],
639
              libraries = ["jc",
640
                           "ntl", "gmp", "gmpxx", "stdc++", "m", "pari"]),
641
                         # IMHO "pari" could be removed here, but some people
642
                         # claim it is needed on Cygwin (see #9896, #9914).
643
                         # If so, we should use uname_specific(). -leif
644
    
645
    Extension('sage.libs.pari.gen',
646
              sources = ["sage/libs/pari/gen.pyx"],
647
              libraries = ['pari', 'gmp']),
648
    
649
    Extension('sage.libs.ppl',
650
              sources = ['sage/libs/ppl.pyx', 'sage/libs/ppl_shim.cc'],
651
              libraries = ['ppl', 'gmpxx', 'gmp', 'm'], 
652
              language="c++",
653
              depends = [SAGE_INC + "ppl.hh"]),
654

655
    Extension('sage.libs.ratpoints',
656
              sources = ["sage/libs/ratpoints.pyx"],
657
              depends = [SAGE_INC + 'ratpoints.h'],
658
              libraries = ["ratpoints", "gmp"]),
659
    
660
    Extension('sage.libs.singular.singular',
661
              sources = ['sage/libs/singular/singular.pyx'],
662
              libraries = singular_libs,
663
              language="c++",
664
              include_dirs = [SAGE_INC + 'singular', SAGE_INC + 'factory'],
665
              depends = singular_depends),
666
    
667
    Extension('sage.libs.singular.polynomial',
668
              sources = ['sage/libs/singular/polynomial.pyx'],
669
              libraries = singular_libs,
670
              language="c++",
671
              include_dirs = [SAGE_INC + 'singular', SAGE_INC + 'factory'],
672
              depends = singular_depends),
673

674
    Extension('sage.libs.singular.ring',
675
              sources = ['sage/libs/singular/ring.pyx'],
676
              libraries = singular_libs,
677
              language="c++",
678
              include_dirs = [SAGE_INC + 'singular', SAGE_INC + 'factory'],
679
              depends = singular_depends),
680

681
    Extension('sage.libs.singular.groebner_strategy',
682
              sources = ['sage/libs/singular/groebner_strategy.pyx'],
683
              libraries = singular_libs,
684
              language="c++",
685
              include_dirs = [SAGE_INC + 'singular', SAGE_INC + 'factory'],
686
              depends = singular_depends),
687

688
    Extension('sage.libs.singular.function',
689
              sources = ['sage/libs/singular/function.pyx'],
690
              libraries = singular_libs,
691
              language="c++",
692
              include_dirs = [SAGE_INC +'singular', SAGE_INC + 'factory'],
693
              depends = singular_depends),
694

695
    Extension('sage.libs.singular.option',
696
              sources = ['sage/libs/singular/option.pyx'],
697
              libraries = singular_libs,
698
              language="c++",
699
              include_dirs = [SAGE_INC + 'singular', SAGE_INC + 'factory'],
700
              depends = singular_depends),
701

702
    Extension('sage.libs.symmetrica.symmetrica',
703
              sources = ["sage/libs/symmetrica/%s"%s for s in ["symmetrica.pyx"]],
704
              include_dirs = ['/usr/include/malloc/'],
705
              libraries = ["symmetrica"],
706
              depends = [SAGE_INC + "symmetrica/def.h"]),
707

708
    Extension('sage.libs.mpmath.utils',
709
              sources = ["sage/libs/mpmath/utils.pyx"],
710
              libraries = ['mpfr', 'gmp']),
711

712
    Extension('sage.libs.mpmath.ext_impl',
713
              sources = ["sage/libs/mpmath/ext_impl.pyx"],
714
              libraries = ['mpfr', 'gmp']),
715

716
    Extension('sage.libs.mpmath.ext_main',
717
              sources = ["sage/libs/mpmath/ext_main.pyx"],
718
              libraries = ['gmp']),
719

720
    Extension('sage.libs.mpmath.ext_libmp',
721
              sources = ["sage/libs/mpmath/ext_libmp.pyx"],
722
              libraries = ['gmp']),
723

724
        ###################################
725
        ##
726
        ## sage.libs.cremona
727
        ## 
728
        ###################################
729
        
730
    Extension('sage.libs.cremona.homspace',
731
              sources = ["sage/libs/cremona/homspace.pyx"],
732
              libraries = ['jc', 'gmpxx', 'ntl', 'gmp',
733
                           'm', 'stdc++', 'pari'],
734
                         # IMHO "pari" could be removed here, but some people
735
                         # claim it is needed on Cygwin (see #9896, #9914).
736
                         # If so, we should use uname_specific(). -leif
737
              language='c++',
738
              define_macros = [("NTL_ALL",None)],
739
              depends = [ SAGE_INC + "eclib/" + h for h in
740
                          ["interface.h","bigrat.h","rat.h","curve.h",
741
                           "moddata.h","symb.h","cusp.h","homspace.h","mat.h"]
742
                        ]),
743

744
    Extension('sage.libs.cremona.mat',
745
              sources = ["sage/libs/cremona/mat.pyx"],
746
              libraries = ['jc', 'gmpxx', 'ntl',
747
                           'gmp', 'm', 'stdc++', ],
748
              language='c++',
749
              define_macros = [("NTL_ALL",None)],
750
              depends = [ SAGE_INC + "eclib/" + h for h in
751
                          ["interface.h","bigrat.h","rat.h","curve.h",
752
                           "moddata.h","symb.h","cusp.h","homspace.h","mat.h"]
753
                        ]),
754

755
    Extension('sage.libs.cremona.newforms',
756
              sources = ["sage/libs/cremona/newforms.pyx"],
757
              libraries = ['jc', 'gmpxx', 'ntl', 'gmp',
758
                           'm', 'stdc++', 'pari'],
759
                         # IMHO "pari" could be removed here, but some people
760
                         # claim it is needed on Cygwin (see #9896, #9914).
761
                         # If so, we should use uname_specific(). -leif
762
              language='c++',
763
              define_macros = [("NTL_ALL",None)],
764
              depends = [ SAGE_INC + "eclib/" + h for h in
765
                          ["interface.h","bigrat.h","rat.h","curve.h",
766
                           "moddata.h","symb.h","cusp.h","xsplit.h","method.h",
767
                           "oldforms.h","homspace.h","cperiods.h","newforms.h"]
768
                        ]),
769

770
        ###################################
771
        ##
772
        ## sage.libs.ntl
773
        ## 
774
        ###################################
775
    
776
    # NOTE: It is *very* important (for cygwin) that csage be the
777
    # first library listed for all ntl extensions below.
778

779
    Extension('sage.libs.ntl.ntl_GF2',
780
              sources = ["sage/libs/ntl/ntl_GF2.pyx"],
781
              libraries = ["csage", "ntl", "gmp", "gmpxx", "stdc++"],
782
              language='c++'),
783

784
    Extension('sage.libs.ntl.ntl_GF2E',
785
              sources = ["sage/libs/ntl/ntl_GF2E.pyx"],
786
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
787
              language='c++'),
788

789
    Extension('sage.libs.ntl.ntl_GF2EContext',
790
              sources = ["sage/libs/ntl/ntl_GF2EContext.pyx"],
791
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
792
              language='c++'),
793

794
    Extension('sage.libs.ntl.ntl_GF2EX',
795
              sources = ["sage/libs/ntl/ntl_GF2EX.pyx"],
796
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
797
              language='c++'),
798

799
    Extension('sage.libs.ntl.ntl_GF2X',
800
              sources = ["sage/libs/ntl/ntl_GF2X.pyx"],
801
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
802
              language='c++'),
803

804
    Extension('sage.libs.ntl.ntl_lzz_p',
805
              sources = ["sage/libs/ntl/ntl_lzz_p.pyx"],
806
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
807
              language='c++'),
808

809
    Extension('sage.libs.ntl.ntl_lzz_pContext',
810
              sources = ["sage/libs/ntl/ntl_lzz_pContext.pyx"],
811
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
812
              language='c++'),
813

814
    Extension('sage.libs.ntl.ntl_lzz_pX',
815
              sources = ["sage/libs/ntl/ntl_lzz_pX.pyx"],
816
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
817
              language='c++'),
818

819
    Extension('sage.libs.ntl.ntl_mat_GF2',
820
              sources = ["sage/libs/ntl/ntl_mat_GF2.pyx"],
821
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
822
              language='c++'),
823

824
    Extension('sage.libs.ntl.ntl_mat_GF2E',
825
              sources = ["sage/libs/ntl/ntl_mat_GF2E.pyx"],
826
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
827
              language='c++'),
828

829
    Extension('sage.libs.ntl.ntl_mat_ZZ',
830
              sources = ["sage/libs/ntl/ntl_mat_ZZ.pyx"],
831
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
832
              language='c++'),
833

834
    Extension('sage.libs.ntl.ntl_ZZ',
835
              sources = ["sage/libs/ntl/ntl_ZZ.pyx"],
836
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
837
              language='c++'),
838

839
    Extension('sage.libs.ntl.ntl_ZZX',
840
              sources = ["sage/libs/ntl/ntl_ZZX.pyx"],
841
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
842
              language='c++'),
843

844
    Extension('sage.libs.ntl.ntl_ZZ_p',
845
              sources = ["sage/libs/ntl/ntl_ZZ_p.pyx"],
846
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
847
              language='c++'),
848

849
    Extension('sage.libs.ntl.ntl_ZZ_pContext',
850
              sources = ["sage/libs/ntl/ntl_ZZ_pContext.pyx"],
851
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
852
              language='c++'),
853

854
    Extension('sage.libs.ntl.ntl_ZZ_pE',
855
              sources = ["sage/libs/ntl/ntl_ZZ_pE.pyx"],
856
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
857
              language='c++'),
858

859
    Extension('sage.libs.ntl.ntl_ZZ_pEContext',
860
              sources = ["sage/libs/ntl/ntl_ZZ_pEContext.pyx"],
861
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
862
              language='c++'),
863

864
    Extension('sage.libs.ntl.ntl_ZZ_pEX',
865
              sources = ["sage/libs/ntl/ntl_ZZ_pEX.pyx"],
866
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
867
              language='c++'),
868

869
    Extension('sage.libs.ntl.ntl_ZZ_pX',
870
              sources = ["sage/libs/ntl/ntl_ZZ_pX.pyx"],
871
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
872
              language='c++'),
873

874
    ################################
875
    ## 
876
    ## sage.matrix
877
    ##
878
    ################################
879

880
    Extension('sage.matrix.action',
881
              sources = ['sage/matrix/action.pyx']),
882
    
883
    Extension('sage.matrix.change_ring',
884
              sources = ['sage/matrix/change_ring.pyx'],
885
              libraries=[BLAS, BLAS2, 'gmp'],
886
              include_dirs = numpy_include_dirs),
887

888
    Extension('sage.matrix.matrix',
889
              sources = ['sage/matrix/matrix.pyx']),
890

891
    Extension('sage.matrix.matrix0',
892
              sources = ['sage/matrix/matrix0.pyx']),
893

894
    Extension('sage.matrix.matrix1',
895
              sources = ['sage/matrix/matrix1.pyx'],
896
              depends = numpy_depends),
897

898
    Extension('sage.matrix.matrix2',
899
              sources = ['sage/matrix/matrix2.pyx']),
900
    
901
    Extension('sage.matrix.matrix_complex_double_dense',
902
              sources = ['sage/matrix/matrix_complex_double_dense.pyx'],
903
              libraries=[BLAS, BLAS2],
904
              include_dirs = numpy_include_dirs,
905
              depends = numpy_depends),
906

907
    Extension('sage.matrix.matrix_cyclo_dense',
908
              sources = ['sage/matrix/matrix_cyclo_dense.pyx'],
909
              language = "c++",
910
              libraries=['ntl', 'gmp']),
911

912
    #Extension('sage.matrix.matrix_cyclo_sparse',
913
    #          sources = ['sage/matrix/matrix_cyclo_sparse.pyx']),
914
    
915
    Extension('sage.matrix.matrix_dense',
916
              sources = ['sage/matrix/matrix_dense.pyx']),
917
    
918
    #Extension('sage.matrix.matrix_domain_dense',
919
    #          sources = ['sage/matrix/matrix_domain_dense.pyx']),
920

921
    #Extension('sage.matrix.matrix_domain_sparse',
922
    #          sources = ['sage/matrix/matrix_domain_sparse.pyx']),
923
              
924
    Extension('sage.matrix.matrix_double_dense',
925
              sources = ['sage/matrix/matrix_double_dense.pyx'],
926
              libraries=[BLAS, BLAS2],
927
              include_dirs = numpy_include_dirs,
928
              depends = numpy_depends),
929

930
    Extension('sage.matrix.matrix_generic_dense',
931
              sources = ['sage/matrix/matrix_generic_dense.pyx']),
932
    
933
    Extension('sage.matrix.matrix_generic_sparse',
934
              sources = ['sage/matrix/matrix_generic_sparse.pyx']),
935

936
    Extension('sage.matrix.matrix_integer_2x2',
937
              sources = ['sage/matrix/matrix_integer_2x2.pyx'],
938
              libraries = ['gmp']),
939

940
    # TODO -- change to use BLAS at some point.
941
    Extension('sage.matrix.matrix_integer_dense',
942
              sources = ['sage/matrix/matrix_integer_dense.pyx'],
943
              extra_compile_args = ['-std=c99'] + m4ri_extra_compile_args,
944
              depends = [SAGE_INC + 'm4ri/m4ri.h'],
945
              # order matters for cygwin!!
946
              libraries = ['iml', 'pari', 'm', 'gmp', BLAS, BLAS2]),
947

948
    Extension('sage.matrix.matrix_integer_sparse',
949
              sources = ['sage/matrix/matrix_integer_sparse.pyx'],
950
              libraries = ['gmp']),
951

952
    Extension('sage.matrix.matrix_mod2_dense',
953
              sources = ['sage/matrix/matrix_mod2_dense.pyx'],
954
              libraries = ['gmp','m4ri', 'gd', 'png12', 'z'],
955
              extra_compile_args = ['-std=c99'] + m4ri_extra_compile_args,
956
              depends = [SAGE_INC + "png.h", SAGE_INC + "m4ri/m4ri.h"]),
957

958
    Extension('sage.matrix.matrix_mod2e_dense',
959
              sources = ['sage/matrix/matrix_mod2e_dense.pyx'],
960
              libraries = ['m4rie', 'm4ri', 'givaro', 'ntl', 'gmpxx', 'gmp', 'm', 'stdc++'],
961
              depends = [SAGE_INC + "m4rie/m4rie.h"],
962
              include_dirs = [SAGE_INC + 'm4rie'],
963
              extra_compile_args = m4ri_extra_compile_args,
964
              language="c++"),
965

966
    Extension('sage.matrix.matrix_modn_dense',
967
              sources = ['sage/matrix/matrix_modn_dense.pyx'],
968
              libraries = ['gmp']),
969

970
    Extension('sage.matrix.matrix_modn_dense_float',
971
              sources = ['sage/matrix/matrix_modn_dense_float.pyx'],
972
              language="c++",
973
              libraries = ['gmp', 'linbox', 'givaro', BLAS, BLAS2],
974
              extra_compile_args = ['-DDISABLE_COMMENTATOR']),
975

976
    Extension('sage.matrix.matrix_modn_dense_double',
977
              sources = ['sage/matrix/matrix_modn_dense_double.pyx'],
978
              language="c++",
979
              libraries = ['gmp', 'linbox', 'givaro', BLAS, BLAS2],
980
              extra_compile_args = ['-DDISABLE_COMMENTATOR']),
981

982
    Extension('sage.matrix.matrix_modn_sparse',
983
              sources = ['sage/matrix/matrix_modn_sparse.pyx'],
984
              libraries = ['gmp']),
985

986
    Extension('sage.matrix.matrix_mpolynomial_dense',
987
              sources = ['sage/matrix/matrix_mpolynomial_dense.pyx'],
988
              libraries = singular_libs,
989
              language="c++",
990
              include_dirs = [SAGE_INC + 'singular', SAGE_INC + 'factory'],
991
              depends = singular_depends),
992

993
    #Extension('sage.matrix.matrix_pid_dense',
994
    #          sources = ['sage/matrix/matrix_pid_dense.pyx']),
995
              
996
    #Extension('sage.matrix.matrix_pid_sparse',
997
    #          sources = ['sage/matrix/matrix_pid_sparse.pyx']),
998

999
    Extension('sage.matrix.matrix_rational_dense',
1000
              sources = ['sage/matrix/matrix_rational_dense.pyx'],
1001
              libraries = ['pari', 'gmp']),
1002
    
1003
    Extension('sage.matrix.matrix_rational_sparse',
1004
              sources = ['sage/matrix/matrix_rational_sparse.pyx'],
1005
              libraries = ['gmp']),
1006
    
1007
    Extension('sage.matrix.matrix_real_double_dense',
1008
              sources = ['sage/matrix/matrix_real_double_dense.pyx'],
1009
              libraries=[BLAS, BLAS2],
1010
              include_dirs = numpy_include_dirs,
1011
              depends = numpy_depends),
1012

1013
    Extension('sage.matrix.matrix_sparse',
1014
              sources = ['sage/matrix/matrix_sparse.pyx']),
1015
    
1016
    Extension('sage.matrix.matrix_symbolic_dense',
1017
              sources = ['sage/matrix/matrix_symbolic_dense.pyx']),
1018

1019
    Extension('sage.matrix.matrix_window',
1020
              sources = ['sage/matrix/matrix_window.pyx']),
1021

1022
    Extension('sage.matrix.matrix_window_modn_dense',
1023
              sources = ['sage/matrix/matrix_window_modn_dense.pyx']),
1024

1025
    Extension('sage.matrix.misc',
1026
              sources = ['sage/matrix/misc.pyx'],
1027
              libraries=['mpfr','gmp']),
1028
    
1029
    Extension('sage.matrix.strassen',
1030
              sources = ['sage/matrix/strassen.pyx']),
1031
                            
1032
    #Extension('sage.matrix.padics.matrix_padic_capped_relative_dense',
1033
    #          sources = ['sage/matrix/padics/matrix_padic_capped_relative_dense.pyx']),
1034

1035
    ################################
1036
    ## 
1037
    ## sage.media
1038
    ##
1039
    ################################
1040

1041
    Extension('sage.media.channels',
1042
              sources = ['sage/media/channels.pyx']), 
1043
    
1044
    ################################
1045
    ## 
1046
    ## sage.misc
1047
    ##
1048
    ################################
1049

1050
    Extension('sage.misc.allocator',
1051
              sources = ['sage/misc/allocator.pyx']),
1052

1053
    Extension('sage.misc.bitset',
1054
              sources = ['sage/misc/bitset.pyx']),
1055

1056
    Extension('sage.misc.cachefunc',
1057
              sources = ['sage/misc/cachefunc.pyx']),
1058

1059
    Extension('sage.misc.citation',
1060
              sources = ['sage/misc/citation.pyx']),
1061

1062
    Extension('sage.misc.constant_function',
1063
              sources = ['sage/misc/constant_function.pyx']),
1064

1065
    Extension('sage.misc.cython_c',
1066
              sources = ['sage/misc/cython_c.pyx']),
1067

1068
    Extension('sage.misc.c3',
1069
              sources = ['sage/misc/c3.pyx']),
1070

1071
    Extension('sage.misc.derivative',
1072
              sources = ['sage/misc/derivative.pyx']),
1073

1074
    Extension('sage.misc.fpickle',
1075
              sources = ['sage/misc/fpickle.pyx']),
1076

1077
    Extension('sage.misc.function_mangling',
1078
              sources = ['sage/misc/function_mangling.pyx']),
1079

1080
    Extension('sage.misc.lazy_import',
1081
              sources = ['sage/misc/lazy_import.pyx']),
1082

1083
    Extension('sage.misc.misc_c',
1084
              sources = ['sage/misc/misc_c.pyx']),
1085

1086
    Extension('sage.misc.nested_class',
1087
              sources = ['sage/misc/nested_class.pyx']),
1088

1089
    Extension('sage.misc.parser',
1090
              sources = ['sage/misc/parser.pyx']),
1091

1092
    Extension('sage.misc.pickle_old',
1093
              sources = ['sage/misc/pickle_old.pyx']),
1094

1095
    Extension('sage.misc.randstate',
1096
              sources = ['sage/misc/randstate.pyx'],
1097
              libraries = ['gmp']),
1098
    
1099
    Extension('sage.misc.refcount',
1100
              sources = ['sage/misc/refcount.pyx']),
1101

1102
    Extension('sage.misc.reset',
1103
              sources = ['sage/misc/reset.pyx']),
1104

1105
    Extension('sage.misc.sage_timeit_class',
1106
              sources = ['sage/misc/sage_timeit_class.pyx']),
1107
    
1108
    Extension('sage.misc.classcall_metaclass', 
1109
              sources = ['sage/misc/classcall_metaclass.pyx']), 
1110

1111
    Extension('sage.misc.sagex_ds',
1112
              sources = ['sage/misc/sagex_ds.pyx']),
1113
    
1114
    Extension('sage.misc.search',
1115
              sources = ['sage/misc/search.pyx']),
1116

1117
    Extension('sage.misc.session',
1118
              sources = ['sage/misc/session.pyx']),
1119

1120
    Extension('sage.misc.stopgap',
1121
              sources = ['sage/misc/stopgap.pyx']),
1122

1123
    ################################
1124
    ## 
1125
    ## sage.modular
1126
    ##
1127
    ################################
1128

1129
    Extension('sage.modular.arithgroup.congroup_pyx',
1130
              sources = ['sage/modular/arithgroup/congroup_pyx.pyx']),
1131

1132
    Extension('sage.modular.arithgroup.farey_symbol',
1133
              sources = ['sage/modular/arithgroup/farey_symbol.pyx',
1134
                         'sage/modular/arithgroup/farey.cpp',
1135
                         'sage/modular/arithgroup/sl2z.cpp'],
1136
              libraries = ['gmpxx'],
1137
              language = 'c++'),
1138

1139
    Extension('sage.modular.modform.eis_series_cython',
1140
              sources = ['sage/modular/modform/eis_series_cython.pyx'],
1141
              libraries = ["gmp", "flint"],
1142
              include_dirs = [SAGE_INC + 'FLINT/'],
1143
              extra_compile_args = ['-std=c99'],
1144
              depends = flint_depends),
1145

1146
    Extension('sage.modular.modsym.apply',
1147
              sources = ['sage/modular/modsym/apply.pyx'],
1148
              libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++"],
1149
              include_dirs = [SAGE_INC + 'FLINT/'],
1150
              extra_compile_args=["-std=c99",  "-D_XPG6"],
1151
              depends = flint_depends),
1152

1153
    Extension('sage.modular.modsym.relation_matrix_pyx',
1154
              sources = ['sage/modular/modsym/relation_matrix_pyx.pyx']),
1155

1156
    Extension('sage.modular.modsym.heilbronn',
1157
              sources = ['sage/modular/modsym/heilbronn.pyx'],
1158
              libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++"],
1159
              include_dirs = [SAGE_INC + 'FLINT/'],
1160
              extra_compile_args=["-std=c99", "-D_XPG6"],
1161
              depends = flint_depends),
1162

1163
    Extension('sage.modular.modsym.p1list',
1164
              sources = ['sage/modular/modsym/p1list.pyx'],
1165
              libraries = ['gmp']),
1166

1167
    ################################
1168
    ## 
1169
    ## sage.modules
1170
    ##
1171
    ################################
1172

1173
    Extension('sage.modules.free_module_element',
1174
              sources = ['sage/modules/free_module_element.pyx'],
1175
              depends = numpy_depends),
1176
    
1177
    Extension('sage.modules.module',
1178
              sources = ['sage/modules/module.pyx']),
1179
              
1180
    Extension('sage.modules.vector_complex_double_dense',
1181
              ['sage/modules/vector_complex_double_dense.pyx'],
1182
              libraries = [BLAS, BLAS2],
1183
              include_dirs = numpy_include_dirs,
1184
              depends = numpy_depends),
1185

1186
    Extension('sage.modules.vector_double_dense',
1187
              ['sage/modules/vector_double_dense.pyx'],
1188
              libraries = [BLAS, BLAS2],
1189
              include_dirs = numpy_include_dirs,
1190
              depends = numpy_depends),
1191
 
1192
    Extension('sage.modules.vector_integer_dense',
1193
              sources = ['sage/modules/vector_integer_dense.pyx'],
1194
              libraries = ['gmp']),
1195

1196
    Extension('sage.modules.vector_modn_dense',
1197
              extra_compile_args = ['-std=c99'],
1198
              sources = ['sage/modules/vector_modn_dense.pyx']),
1199

1200
    Extension('sage.modules.vector_mod2_dense',
1201
              sources = ['sage/modules/vector_mod2_dense.pyx'],
1202
              libraries = ['gmp','m4ri', 'png12', 'gd'],
1203
              extra_compile_args = ['-std=c99'] + m4ri_extra_compile_args,
1204
              depends = [SAGE_INC + "png.h", SAGE_INC + "m4ri/m4ri.h"]),
1205
    
1206
    Extension('sage.modules.vector_rational_dense',
1207
              sources = ['sage/modules/vector_rational_dense.pyx'],
1208
              libraries = ['gmp']),
1209

1210
    Extension('sage.modules.vector_real_double_dense',
1211
              ['sage/modules/vector_real_double_dense.pyx'],
1212
              libraries = [BLAS, BLAS2],
1213
              include_dirs = numpy_include_dirs,
1214
              depends = numpy_depends),
1215

1216
    # Extension('sage.modules.vector_rational_sparse',
1217
    #           sources = ['sage/modules/vector_rational_sparse.pyx'],
1218
    #           libraries = ['gmp']),
1219

1220
    ################################
1221
    ## 
1222
    ## sage.numerical
1223
    ##
1224
    ################################
1225

1226

1227
    Extension("sage.numerical.mip",
1228
              ["sage/numerical/mip.pyx"],
1229
              include_dirs=[SAGE_INC],
1230
              libraries=["csage","stdc++"]),
1231

1232
    Extension("sage.numerical.backends.generic_backend",
1233
              ["sage/numerical/backends/generic_backend.pyx"],
1234
              include_dirs = [SAGE_INC, "sage/c_lib/include/"],
1235
              libraries=["csage", "stdc++"]),
1236

1237
    Extension("sage.numerical.backends.glpk_backend",
1238
              ["sage/numerical/backends/glpk_backend.pyx"],
1239
              include_dirs = [SAGE_INC, "sage/c_lib/include/"],
1240
              language = 'c++',
1241
              libraries=["csage", "stdc++", "glpk", "gmp", "z"]),
1242

1243
    ################################
1244
    ## 
1245
    ## sage.plot
1246
    ##
1247
    ################################
1248

1249
    Extension('sage.plot.complex_plot',
1250
              sources = ['sage/plot/complex_plot.pyx'],
1251
              include_dirs = numpy_include_dirs,
1252
              depends = numpy_depends),
1253
    
1254
    Extension('sage.plot.plot3d.base',
1255
              sources = ['sage/plot/plot3d/base.pyx'],
1256
              extra_compile_args=["-std=c99"]),
1257
    
1258
    Extension('sage.plot.plot3d.implicit_surface',
1259
              sources = ['sage/plot/plot3d/implicit_surface.pyx'],
1260
              libraries = ['gsl'],
1261
              include_dirs = numpy_include_dirs,
1262
              depends = numpy_depends),
1263
    
1264
    Extension('sage.plot.plot3d.index_face_set',
1265
              sources = ['sage/plot/plot3d/index_face_set.pyx'],
1266
              extra_compile_args=["-std=c99"]),
1267
    
1268
    Extension('sage.plot.plot3d.parametric_surface',
1269
              sources = ['sage/plot/plot3d/parametric_surface.pyx']),
1270

1271
    Extension('sage.plot.plot3d.shapes',
1272
              sources = ['sage/plot/plot3d/shapes.pyx']),
1273

1274
    Extension('sage.plot.plot3d.transform',
1275
              sources = ['sage/plot/plot3d/transform.pyx']),
1276

1277
    ################################
1278
    ## 
1279
    ## sage.quadratic_forms
1280
    ##
1281
    ################################
1282

1283
    Extension('sage.quadratic_forms.count_local_2',
1284
              sources = ['sage/quadratic_forms/count_local_2.pyx'],
1285
              libraries = ['gmp']),
1286

1287
    Extension('sage.quadratic_forms.quadratic_form__evaluate',
1288
              sources = ['sage/quadratic_forms/quadratic_form__evaluate.pyx']),
1289

1290
    ################################
1291
    ## 
1292
    ## sage.rings
1293
    ##
1294
    ################################
1295

1296
    Extension('sage.rings.bernmm',
1297
              sources = ['sage/rings/bernmm.pyx',
1298
                         'sage/rings/bernmm/bern_modp.cpp',
1299
                         'sage/rings/bernmm/bern_modp_util.cpp',
1300
                         'sage/rings/bernmm/bern_rat.cpp'],
1301
              libraries = ['ntl', 'gmp', 'stdc++', 'pthread'],
1302
              depends = ['sage/rings/bernmm/bern_modp.h',
1303
                         'sage/rings/bernmm/bern_modp_util.h',
1304
                         'sage/rings/bernmm/bern_rat.h'],
1305
              language = 'c++',
1306
              define_macros=[('USE_THREADS', '1'),
1307
                             ('THREAD_STACK_SIZE', '4096')]),
1308

1309
    Extension('sage.rings.bernoulli_mod_p',
1310
              sources = ['sage/rings/bernoulli_mod_p.pyx'],
1311
              libraries=['ntl','stdc++'],
1312
              language = 'c++',
1313
              include_dirs = ['sage/libs/ntl/']),
1314

1315
    Extension('sage.rings.complex_double',
1316
              sources = ['sage/rings/complex_double.pyx'],
1317
              extra_compile_args=["-std=c99",  "-D_XPG6"],
1318
              libraries = (['gsl', BLAS, BLAS2, 'pari', 'gmp'] + 
1319
                           uname_specific('CYGWIN', ['mc', 'md'], []) +
1320
                           ['m'])),
1321

1322
    Extension('sage.rings.complex_interval',
1323
              sources = ['sage/rings/complex_interval.pyx'],
1324
              libraries = ['mpfi', 'mpfr', 'gmp']),
1325

1326
    Extension('sage.rings.complex_number',
1327
              sources = ['sage/rings/complex_number.pyx'],
1328
              libraries = ['mpfr', 'gmp'],
1329
              depends = numpy_depends),
1330

1331
    Extension('sage.rings.integer',
1332
              sources = ['sage/rings/integer.pyx'],
1333
              libraries=['ntl', 'pari', 'flint', 'gmp'], 
1334
              include_dirs = [SAGE_INC + 'FLINT/'], 
1335
              depends = numpy_depends + flint_depends),
1336

1337
    Extension('sage.rings.integer_ring',
1338
              sources = ['sage/rings/integer_ring.pyx'],
1339
              libraries=['ntl', 'gmp']),
1340

1341
    Extension('sage.rings.factorint', 
1342
              sources = ['sage/rings/factorint.pyx'],
1343
              libraries=['gmp']),
1344

1345
    Extension('sage.rings.fast_arith',
1346
              sources = ['sage/rings/fast_arith.pyx'],
1347
              libraries=['pari','gmp','csage']), 
1348

1349
    Extension('sage.rings.fraction_field_element',
1350
              sources = ['sage/rings/fraction_field_element.pyx']),
1351
    
1352
    Extension('sage.rings.fraction_field_FpT',
1353
              sources = ['sage/rings/fraction_field_FpT.pyx'],
1354
              libraries = ["csage", "flint", "gmp", "gmpxx", "ntl", "zn_poly"],
1355
              extra_compile_args=["-std=c99", "-D_XPG6"],
1356
              include_dirs = [SAGE_INC + 'FLINT/'],
1357
              depends = flint_depends),
1358
    
1359
    Extension('sage.rings.laurent_series_ring_element',
1360
              sources = ['sage/rings/laurent_series_ring_element.pyx']),
1361

1362
    Extension('sage.rings.morphism',
1363
              sources = ['sage/rings/morphism.pyx']),
1364

1365
    Extension('sage.rings.complex_mpc',
1366
              sources = ['sage/rings/complex_mpc.pyx'],
1367
              libraries = ['mpc', 'mpfr', 'gmp']),
1368

1369
    Extension('sage.rings.noncommutative_ideals',
1370
              sources = ['sage/rings/noncommutative_ideals.pyx']),
1371

1372
    Extension('sage.rings.power_series_mpoly',
1373
              sources = ['sage/rings/power_series_mpoly.pyx']),
1374

1375
    Extension('sage.rings.power_series_poly',
1376
              sources = ['sage/rings/power_series_poly.pyx']),
1377

1378
    Extension('sage.rings.power_series_ring_element',
1379
              sources = ['sage/rings/power_series_ring_element.pyx']),
1380

1381
    Extension('sage.rings.rational',
1382
              sources = ['sage/rings/rational.pyx'],
1383
              libraries=['ntl', 'gmp'],
1384
              depends = numpy_depends),
1385

1386
    Extension('sage.rings.real_double',
1387
              sources = ['sage/rings/real_double.pyx'],
1388
              libraries = ['gsl', 'gmp', BLAS, BLAS2],
1389
              depends = numpy_depends,
1390
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
1391

1392
    Extension('sage.rings.real_interval_absolute',
1393
              sources = ['sage/rings/real_interval_absolute.pyx'],
1394
              libraries = ['gmp']),
1395

1396
    Extension('sage.rings.real_lazy',
1397
              sources = ['sage/rings/real_lazy.pyx']),
1398

1399
    Extension('sage.rings.real_mpfi',
1400
              sources = ['sage/rings/real_mpfi.pyx'],
1401
              libraries = ['mpfi', 'mpfr', 'gmp']),
1402

1403
    Extension('sage.rings.real_mpfr',
1404
              sources = ['sage/rings/real_mpfr.pyx'],
1405
              libraries = ['mpfr', 'pari', 'gmp'],
1406
              depends = numpy_depends),
1407

1408
    #Extension('sage.rings.real_rqdf',
1409
    #          sources = ["sage/rings/real_rqdf.pyx"],
1410
    #          libraries = ['qd', 'm', 'stdc++','gmp','mpfr' ],
1411
    #          language='c++'),
1412

1413
    Extension('sage.rings.residue_field',
1414
              sources = ['sage/rings/residue_field.pyx']),
1415

1416
    Extension('sage.rings.ring',
1417
              sources = ['sage/rings/ring.pyx']),
1418

1419
        ################################
1420
        ##
1421
        ## sage.rings.finite_rings
1422
        ## 
1423
        ################################
1424

1425
    Extension('sage.rings.finite_rings.finite_field_base',
1426
              sources = ['sage/rings/finite_rings/finite_field_base.pyx']),
1427

1428
    Extension('sage.rings.finite_rings.element_base',
1429
              sources = ['sage/rings/finite_rings/element_base.pyx']),
1430

1431
    Extension('sage.rings.finite_rings.integer_mod',
1432
              sources = ['sage/rings/finite_rings/integer_mod.pyx'],
1433
              libraries = ['gmp']),
1434

1435
    Extension('sage.rings.finite_rings.element_givaro',
1436
              sources = ["sage/rings/finite_rings/element_givaro.pyx"],
1437
              # this order is needed to compile under windows.
1438
              libraries = ['givaro', 'ntl', 'gmpxx', 'gmp', 'm', 'stdc++', ],
1439
              language='c++'),
1440

1441
    Extension('sage.rings.finite_rings.element_ntl_gf2e',
1442
              sources = ['sage/rings/finite_rings/element_ntl_gf2e.pyx'],
1443
              libraries = ['ntl', 'gmp'],
1444
              language = 'c++'),
1445

1446
        ################################
1447
        ##
1448
        ## sage.rings.function_field
1449
        ## 
1450
        ################################
1451

1452
    Extension('sage.rings.function_field.function_field_element',
1453
              sources = ['sage/rings/function_field/function_field_element.pyx']),
1454

1455
        ################################
1456
        ##
1457
        ## sage.rings.number_field
1458
        ## 
1459
        ################################
1460

1461
    Extension('sage.rings.number_field.number_field_base',
1462
              sources = ['sage/rings/number_field/number_field_base.pyx']),
1463

1464
    Extension('sage.rings.number_field.number_field_element',
1465
              sources = ['sage/rings/number_field/number_field_element.pyx'],
1466
              libraries=['ntl','gmp'],
1467
              language = 'c++'),
1468

1469
    Extension('sage.rings.number_field.number_field_element_quadratic',
1470
              sources = ['sage/rings/number_field/number_field_element_quadratic.pyx'],
1471
              libraries=['ntl', 'gmp'],
1472
              language = 'c++'),
1473
  
1474
    Extension('sage.rings.number_field.number_field_morphisms',
1475
              sources = ['sage/rings/number_field/number_field_morphisms.pyx']),
1476

1477
    Extension('sage.rings.number_field.totallyreal',
1478
              sources = ['sage/rings/number_field/totallyreal.pyx'],
1479
              libraries = ['pari', 'gmp']),
1480
    
1481
    Extension('sage.rings.number_field.totallyreal_data',
1482
              sources = ['sage/rings/number_field/totallyreal_data.pyx'],
1483
              libraries = ['gmp'],
1484
              depends = numpy_depends),
1485
    
1486
        ################################
1487
        ##
1488
        ## sage.rings.padics
1489
        ## 
1490
        ################################
1491
    
1492
    Extension('sage.rings.padics.local_generic_element',
1493
              sources = ['sage/rings/padics/local_generic_element.pyx']),
1494
    
1495
    Extension('sage.rings.padics.padic_base_coercion',
1496
              sources = ['sage/rings/padics/padic_base_coercion.pyx'],
1497
              libraries=['gmp']),
1498
    
1499
    Extension('sage.rings.padics.padic_base_generic_element',
1500
              sources = ['sage/rings/padics/padic_base_generic_element.pyx'],
1501
              libraries=['gmp']),
1502
    
1503
    Extension('sage.rings.padics.padic_capped_absolute_element',
1504
              sources = ['sage/rings/padics/padic_capped_absolute_element.pyx'],
1505
              libraries=['gmp']),
1506
    
1507
    Extension('sage.rings.padics.padic_capped_relative_element',
1508
              sources = ['sage/rings/padics/padic_capped_relative_element.pyx'],
1509
              libraries=['gmp', 'csage']),
1510
    
1511
    Extension('sage.rings.padics.padic_ext_element',
1512
              sources = ['sage/rings/padics/padic_ext_element.pyx'],
1513
              libraries=['ntl', 'gmp', 'csage', 'gmpxx', 'm', 'stdc++'],
1514
              language='c++'),
1515
    
1516
    Extension('sage.rings.padics.padic_fixed_mod_element',
1517
              sources = ['sage/rings/padics/padic_fixed_mod_element.pyx'],
1518
              libraries=['gmp']),
1519
    
1520
    Extension('sage.rings.padics.padic_generic_element',
1521
              sources = ['sage/rings/padics/padic_generic_element.pyx'],
1522
              libraries=['gmp']),
1523
    
1524
    Extension('sage.rings.padics.padic_printing',
1525
              sources = ['sage/rings/padics/padic_printing.pyx'],
1526
              libraries=['gmp', 'ntl', 'csage', 'gmpxx', 'm', 'stdc++'],
1527
              language='c++'),
1528
    
1529
    Extension('sage.rings.padics.padic_ZZ_pX_CA_element',
1530
              sources = ['sage/rings/padics/padic_ZZ_pX_CA_element.pyx'],
1531
              libraries = ['ntl', 'gmp', 'csage','gmpxx','m','stdc++'],
1532
              language='c++'),
1533
    
1534
    Extension('sage.rings.padics.padic_ZZ_pX_CR_element',
1535
              sources = ['sage/rings/padics/padic_ZZ_pX_CR_element.pyx'],
1536
              libraries=['ntl', 'gmp', 'csage','gmpxx','m','stdc++'],
1537
              language='c++'),
1538
    
1539
    Extension('sage.rings.padics.padic_ZZ_pX_element',
1540
              sources = ['sage/rings/padics/padic_ZZ_pX_element.pyx'],
1541
              libraries=['ntl', 'gmp', 'csage', 'gmpxx', 'm', 'stdc++'],
1542
              language='c++'),
1543
    
1544
    Extension('sage.rings.padics.padic_ZZ_pX_FM_element',
1545
              sources = ['sage/rings/padics/padic_ZZ_pX_FM_element.pyx'],
1546
              libraries=['ntl', 'gmp', 'csage', 'gmpxx', 'm', 'stdc++'],
1547
              language='c++'),
1548
    
1549
    Extension('sage.rings.padics.pow_computer',
1550
              sources = ['sage/rings/padics/pow_computer.pyx'],
1551
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
1552
              language='c++'),
1553
    
1554
    Extension('sage.rings.padics.pow_computer_ext',
1555
              sources = ['sage/rings/padics/pow_computer_ext.pyx'],
1556
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
1557
              language='c++'),
1558

1559
        ################################
1560
        ##
1561
        ## sage.rings.polynomial
1562
        ## 
1563
        ################################
1564
    
1565
    Extension('sage.rings.polynomial.cyclotomic',
1566
              sources = ['sage/rings/polynomial/cyclotomic.pyx']), 
1567

1568
    Extension('sage.rings.polynomial.laurent_polynomial',
1569
              sources = ['sage/rings/polynomial/laurent_polynomial.pyx']),
1570

1571
    Extension('sage.rings.polynomial.multi_polynomial',
1572
              sources = ['sage/rings/polynomial/multi_polynomial.pyx']), 
1573

1574
    Extension('sage.rings.polynomial.multi_polynomial_ideal_libsingular',
1575
              sources = ['sage/rings/polynomial/multi_polynomial_ideal_libsingular.pyx'],
1576
              libraries = singular_libs,
1577
              language="c++",
1578
              include_dirs = [SAGE_INC + 'singular', SAGE_INC + 'factory'],
1579
              depends = singular_depends),
1580

1581
    Extension('sage.rings.polynomial.plural',
1582
              sources = ['sage/rings/polynomial/plural.pyx'],
1583
              libraries = ['m', 'readline', 'singular', 'givaro', 'gmpxx', 'gmp'],
1584
              language="c++",
1585
              include_dirs = [SAGE_ROOT +'/local/include/singular'],
1586
              depends = [SAGE_ROOT + "/local/include/libsingular.h"]),
1587

1588
    Extension('sage.rings.polynomial.multi_polynomial_libsingular',
1589
              sources = ['sage/rings/polynomial/multi_polynomial_libsingular.pyx'],
1590
              libraries = singular_libs,
1591
              language="c++",
1592
              include_dirs = [SAGE_INC + 'singular', SAGE_INC + 'factory'],
1593
              depends = singular_depends),
1594

1595
    Extension('sage.rings.polynomial.multi_polynomial_ring_generic',
1596
              sources = ['sage/rings/polynomial/multi_polynomial_ring_generic.pyx']), 
1597

1598
    Extension('sage.rings.polynomial.polydict',
1599
              sources = ['sage/rings/polynomial/polydict.pyx']),
1600

1601
    Extension('sage.rings.polynomial.polynomial_compiled',
1602
               sources = ['sage/rings/polynomial/polynomial_compiled.pyx']),
1603

1604
    Extension('sage.rings.polynomial.polynomial_element',
1605
              sources = ['sage/rings/polynomial/polynomial_element.pyx'],
1606
              depends = numpy_depends),
1607

1608
    Extension('sage.rings.polynomial.polynomial_gf2x',
1609
              sources = ['sage/rings/polynomial/polynomial_gf2x.pyx'],
1610
              libraries = ['ntl', 'stdc++', 'gmp'],
1611
              extra_compile_args = m4ri_extra_compile_args,
1612
              language = 'c++',
1613
              depends = [SAGE_INC + 'm4ri/m4ri.h'],
1614
              include_dirs = ['sage/libs/ntl/']),
1615

1616
    Extension('sage.rings.polynomial.polynomial_zz_pex',
1617
              sources = ['sage/rings/polynomial/polynomial_zz_pex.pyx'],
1618
              libraries = ['ntl', 'stdc++', 'gmp'],
1619
              language = 'c++',
1620
              include_dirs = ['sage/libs/ntl/']),
1621

1622
    Extension('sage.rings.polynomial.polynomial_zmod_flint',
1623
              sources = ['sage/rings/polynomial/polynomial_zmod_flint.pyx'],
1624
              libraries = ["csage", "flint", "gmp", "gmpxx", "ntl", "zn_poly"],
1625
              extra_compile_args=["-std=c99", "-D_XPG6"],
1626
              include_dirs = [SAGE_INC + 'FLINT/'],
1627
              depends = flint_depends),
1628

1629
    Extension('sage.rings.polynomial.polynomial_integer_dense_flint',
1630
              sources = ['sage/rings/polynomial/polynomial_integer_dense_flint.pyx'],
1631
              language = 'c++',
1632
              libraries = ["csage", "flint", "ntl", "gmpxx", "gmp"],
1633
              include_dirs = [SAGE_INC + 'FLINT/'],
1634
              depends = flint_depends),
1635

1636
    Extension('sage.rings.polynomial.polynomial_integer_dense_ntl',
1637
              sources = ['sage/rings/polynomial/polynomial_integer_dense_ntl.pyx'],
1638
              libraries = ['ntl', 'stdc++', 'gmp'],
1639
              language = 'c++',
1640
              include_dirs = ['sage/libs/ntl/']),
1641

1642
    Extension('sage.rings.polynomial.polynomial_rational_flint',
1643
              sources = ['sage/rings/polynomial/polynomial_rational_flint.pyx', 'sage/libs/flint/fmpq_poly.c'],
1644
              language = 'c++',
1645
              extra_compile_args=["-std=c99"] + uname_specific('SunOS', [], ['-D_XPG6']),
1646
              libraries = ["csage", "flint", "ntl", "gmpxx", "gmp"],
1647
              include_dirs = [SAGE_INC + 'FLINT/', 'sage/libs/flint/'],
1648
              depends = flint_depends),
1649

1650
    Extension('sage.rings.polynomial.polynomial_modn_dense_ntl',
1651
              sources = ['sage/rings/polynomial/polynomial_modn_dense_ntl.pyx'],
1652
              libraries = ['ntl', 'stdc++', 'gmp'],
1653
              language = 'c++',
1654
              include_dirs = ['sage/libs/ntl/']),
1655

1656
    Extension('sage.rings.polynomial.pbori',
1657
              sources = ['sage/rings/polynomial/pbori.pyx'],
1658
              libraries=['polybori', 'polybori_groebner', 'gd', 'png12', 'm4ri'],
1659
              include_dirs = [SAGE_INC, "sage/libs/polybori"],
1660
              depends = [SAGE_INC + "polybori/" + hd + ".h" for hd in ["polybori", "config"] ] + \
1661
                        [SAGE_INC + 'm4ri/m4ri.h'],
1662
              extra_compile_args = polybori_extra_compile_args + m4ri_extra_compile_args,
1663
              language = 'c++'),
1664

1665
    Extension('sage.rings.polynomial.polynomial_real_mpfr_dense',
1666
              sources = ['sage/rings/polynomial/polynomial_real_mpfr_dense.pyx'],
1667
              libraries = ['mpfr', 'gmp']),
1668

1669
    Extension('sage.rings.polynomial.real_roots',
1670
              sources = ['sage/rings/polynomial/real_roots.pyx'],
1671
              libraries=['mpfr', 'gmp'],
1672
              include_dirs = numpy_include_dirs,
1673
              depends = numpy_depends),
1674

1675
    Extension('sage.rings.polynomial.symmetric_reduction',
1676
              sources = ['sage/rings/polynomial/symmetric_reduction.pyx']),
1677

1678
    ################################
1679
    ## 
1680
    ## sage.schemes
1681
    ##
1682
    ################################
1683

1684
    Extension('sage.schemes.elliptic_curves.descent_two_isogeny',
1685
              sources = ['sage/schemes/elliptic_curves/descent_two_isogeny.pyx'],
1686
              extra_compile_args=["-std=c99"],
1687
              depends = [SAGE_INC + 'ratpoints.h',
1688
                         SAGE_INC + 'gmp.h'] +
1689
                         flint_depends,
1690
              include_dirs = [SAGE_INC + 'FLINT/'],
1691
              libraries = ['flint', 'gmp', 'ratpoints']),
1692

1693
    Extension('sage.schemes.hyperelliptic_curves.hypellfrob',
1694
              sources = ['sage/schemes/hyperelliptic_curves/hypellfrob.pyx',
1695
                         'sage/schemes/hyperelliptic_curves/hypellfrob/hypellfrob.cpp',
1696
                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_ntl.cpp',
1697
                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_zn_poly.cpp'],
1698
              libraries = ['ntl', 'stdc++', 'gmp', 'zn_poly'],
1699
              depends = ['sage/schemes/hyperelliptic_curves/hypellfrob/hypellfrob.h',
1700
                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_ntl.h',
1701
                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_zn_poly.h'],
1702
              language = 'c++',
1703
              include_dirs = ['sage/libs/ntl/',
1704
                              'sage/schemes/hyperelliptic_curves/hypellfrob/']),
1705

1706
    Extension('sage.schemes.toric.divisor_class',
1707
              sources = ['sage/schemes/toric/divisor_class.pyx'],
1708
              libraries = ['gmp']),              
1709

1710
    ################################
1711
    ## 
1712
    ## sage.sets
1713
    ##
1714
    ################################
1715

1716
    Extension('sage.sets.disjoint_set',
1717
              sources = ['sage/sets/disjoint_set.pyx'],
1718
              libraries = ['gmp', 'flint'],
1719
              include_dirs = [SAGE_INC + 'FLINT/'],
1720
              extra_compile_args = ['-std=c99'],
1721
              depends = flint_depends),
1722

1723
    ################################
1724
    ## 
1725
    ## sage.stats
1726
    ##
1727
    ################################
1728

1729
    Extension('sage.stats.hmm.util',
1730
              sources = ['sage/stats/hmm/util.pyx']),
1731

1732
    Extension('sage.stats.hmm.distributions',
1733
              sources = ['sage/stats/hmm/distributions.pyx']),
1734
    
1735
    Extension('sage.stats.hmm.hmm',
1736
              sources = ['sage/stats/hmm/hmm.pyx']),
1737

1738
    Extension('sage.stats.hmm.chmm',
1739
              sources = ['sage/stats/hmm/chmm.pyx'],
1740
              extra_compile_args=["-std=c99"]),
1741
    
1742
    Extension('sage.stats.intlist',
1743
              sources = ['sage/stats/intlist.pyx']),
1744

1745
    ################################
1746
    ## 
1747
    ## sage.structure
1748
    ##
1749
    ################################
1750

1751
    Extension('sage.structure.category_object',
1752
              sources = ['sage/structure/category_object.pyx']),
1753

1754
    Extension('sage.structure.coerce',
1755
              sources = ['sage/structure/coerce.pyx']),
1756

1757
    Extension('sage.structure.coerce_actions',
1758
              sources = ['sage/structure/coerce_actions.pyx']),
1759

1760
    Extension('sage.structure.coerce_dict',
1761
              sources = ['sage/structure/coerce_dict.pyx']),
1762

1763
    Extension('sage.structure.coerce_maps',
1764
              sources = ['sage/structure/coerce_maps.pyx']),
1765

1766
    Extension('sage.structure.element',
1767
              sources = ['sage/structure/element.pyx']),
1768

1769
    Extension('sage.structure.factory',
1770
              sources = ['sage/structure/factory.pyx']),
1771

1772
    Extension('sage.structure.generators',
1773
              sources = ['sage/structure/generators.pyx']),
1774

1775
    Extension('sage.structure.mutability',
1776
              sources = ['sage/structure/mutability.pyx']),
1777
    
1778
    Extension('sage.structure.parent',
1779
              sources = ['sage/structure/parent.pyx']),
1780

1781
    Extension('sage.structure.parent_base',
1782
              sources = ['sage/structure/parent_base.pyx']),
1783
    
1784
    Extension('sage.structure.parent_gens',
1785
              sources = ['sage/structure/parent_gens.pyx']),
1786

1787
    Extension('sage.structure.parent_old',
1788
              sources = ['sage/structure/parent_old.pyx']),
1789

1790
    Extension('sage.structure.sage_object',
1791
              sources = ['sage/structure/sage_object.pyx']),
1792

1793
    Extension('sage.structure.wrapper_parent',
1794
              sources = ['sage/structure/wrapper_parent.pyx']),
1795

1796
    ################################
1797
    ## 
1798
    ## sage.symbolic
1799
    ##
1800
    ################################
1801
    Extension('sage.symbolic.constants_c',
1802
              sources = ['sage/symbolic/constants_c.pyx'],
1803
              language = 'c++',
1804
              depends = ginac_depends,
1805
              libraries = ["pynac", "gmp"]),
1806

1807
    Extension('sage.symbolic.expression',
1808
              sources = ['sage/symbolic/expression.pyx'],
1809
              language = 'c++',
1810
              depends = ginac_depends,
1811
              libraries = ["pynac", "gmp"]),
1812
    
1813
    Extension('sage.symbolic.getitem',
1814
              sources = ['sage/symbolic/getitem.pyx'],
1815
              language = 'c++',
1816
              depends = [SAGE_LOCAL + "/include/pynac/ginac.h"],
1817
              libraries = ["pynac", "gmp"]),
1818
    
1819
    Extension('sage.symbolic.function',
1820
              sources = ['sage/symbolic/function.pyx'],
1821
              language = 'c++',
1822
              depends = ginac_depends + numpy_depends,
1823
              libraries = ["pynac", "gmp"]),
1824

1825
    Extension('sage.symbolic.pynac',
1826
              sources = ['sage/symbolic/pynac.pyx'],
1827
              language = 'c++',
1828
              depends = ginac_depends,
1829
              libraries = ["pynac", "gmp", "gsl"]),
1830
    
1831
    Extension('sage.symbolic.ring',
1832
              sources = ['sage/symbolic/ring.pyx'],
1833
              language = 'c++',
1834
              depends = ginac_depends + numpy_depends,
1835
              libraries = ["pynac", "gmp"]),
1836

1837
    ################################
1838
    ## 
1839
    ## sage.tests
1840
    ##
1841
    ################################
1842
    Extension('sage.tests.interrupt',
1843
              sources = ['sage/tests/interrupt.pyx', 'sage/tests/c_lib.c']),
1844

1845
    Extension('sage.tests.stl_vector',
1846
              sources = ['sage/tests/stl_vector.pyx'], 
1847
              language = 'c++'),
1848
    
1849
    Extension('sage.tests.cython',
1850
              sources = ['sage/tests/cython.pyx']),
1851
    
1852
    ]
1853

1854
# Optional extensions :
1855
# These extensions are to be compiled only if the
1856
# corresponding packages have been installed
1857

1858
from sage.misc.package import is_package_installed
1859

1860

1861
if (os.path.isfile(SAGE_INC + "gurobi_c.h") and                                                                                                                                                                                   
1862
    os.path.isfile(SAGE_LOCAL + "/lib/libgurobi.so")):
1863
    ext_modules.append(
1864
        Extension("sage.numerical.backends.gurobi_backend",
1865
                  ["sage/numerical/backends/gurobi_backend.pyx"],
1866
                  include_dirs = [SAGE_INC, "sage/c_lib/include/"],
1867
                  language = 'c',
1868
                  libraries = ["csage", "stdc++", "gurobi"])
1869
        )
1870

1871

1872
if (os.path.isfile(SAGE_INC + "cplex.h") and                                                                                                                                                                                   
1873
    os.path.isfile(SAGE_LOCAL + "/lib/libcplex.a")):
1874
    ext_modules.append(
1875
        Extension("sage.numerical.backends.cplex_backend",                                                                                                                                                                                    
1876
                  ["sage/numerical/backends/cplex_backend.pyx"],                                                                                                                                                                              
1877
                  include_dirs = [SAGE_INC, "sage/c_lib/include/"],                                                                                                                                                        
1878
                  language = 'c',                                                                                                                                                                                                             
1879
                  libraries = ["csage", "stdc++", "cplex"]) 
1880
        )
1881

1882
if is_package_installed('cbc'):
1883
    ext_modules.append(
1884
        Extension("sage.numerical.backends.coin_backend",                                                                                                                                                                                     
1885
                  ["sage/numerical/backends/coin_backend.pyx"],
1886
                  include_dirs = [SAGE_INC, "sage/c_lib/include/"],
1887
                  language = 'c++',
1888
                  libraries = ["csage", "stdc++", "Cbc", "CbcSolver", "Cgl", "Clp", "CoinUtils", "OsiCbc", "OsiClp", "Osi"])
1889
        )
1890

1891

1892

1893
# Only include darwin_utilities on OS_X >= 10.5
1894
UNAME = os.uname()
1895
if UNAME[0] == "Darwin" and not UNAME[2].startswith('8.'):
1896
    ext_modules.append(
1897
        Extension('sage.misc.darwin_utilities',
1898
            sources = ['sage/misc/darwin_memory_usage.c',
1899
                       'sage/misc/darwin_utilities.pyx'],
1900
            depends = ['sage/misc/darwin_memory_usage.h'])
1901
        )
1902

1903

1904
if is_package_installed('lrcalc'):
1905
    ext_modules.append(
1906
        Extension('sage.libs.lrcalc.lrcalc',
1907
                  sources = ["sage/libs/lrcalc/lrcalc.pyx"],
1908
                  include_dirs = [SAGE_LOCAL + '/include/lrcalc/'],
1909
                  libraries = ["lrcalc"],
1910
                  depends = [SAGE_LOCAL + "/include/lrcalc/symfcn.h"]), # should include all .h
1911
        )
1912

1913

1914
Product

Resources

Company
