CoCalc -- module

GitHub Repository: sagemath/sagesmc
Path: blob/master/src/module_list.py
⁸⁸¹⁴ views
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#!/usr/bin/env python
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import os, sys
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from distutils.core import setup
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from distutils.extension import Extension
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from sage.env import *
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SAGE_INC = os.path.join(SAGE_LOCAL, 'include')
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#########################################################
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### BLAS setup
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#########################################################
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## Choose cblas library -- note -- make sure to update sage/misc/cython.py
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## if you change this!!
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if os.environ.has_key('SAGE_BLAS'):
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    BLAS=os.environ['SAGE_BLAS']
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    BLAS2=os.environ['SAGE_BLAS']
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elif os.path.exists('%s/lib/libatlas.so'%os.environ['SAGE_LOCAL']):
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    BLAS='cblas'
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    BLAS2='atlas'
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elif os.path.exists('/usr/lib/libcblas.dylib') or \
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     os.path.exists('/usr/lib/libcblas.so'):
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    BLAS='cblas'
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    BLAS2='cblas'
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elif os.path.exists('/usr/lib/libblas.dll.a'):
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    BLAS='gslcblas'
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    BLAS2='gslcblas'
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else:
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    # This is very slow  (?), but *guaranteed* to be available.
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    BLAS='gslcblas'
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    BLAS2='gslcblas'
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#########################################################
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### Commonly used definitions
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#########################################################
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numpy_include_dirs = [SAGE_LOCAL + '/lib/python/site-packages/numpy/core/include']
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# We pick a file from numpy which is autogenerated so it has the
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# timestamp of the numpy build.
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numpy_depends = [SAGE_LOCAL + '/lib/python/site-packages/numpy/core/include/numpy/_numpyconfig.h']
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flint_depends = [SAGE_INC + '/flint/flint.h']
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singular_depends = [SAGE_INC + '/libsingular.h', SAGE_INC + '/givaro/givconfig.h']
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#########################################################
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### M4RI flags
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#########################################################
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import ast
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m4ri_extra_compile_args = ["-std=c99"]
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for line in open(SAGE_INC + "/m4ri/m4ri_config.h"):
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    if not line.startswith("#define __M4RI_SIMD_CFLAGS"):
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        continue
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    m4ri_sse2_cflags = ast.literal_eval(line[len("#define __M4RI_SIMD_CFLAGS"):].strip())
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    m4ri_extra_compile_args.extend( [flag.strip() for flag in m4ri_sse2_cflags.split(" ") if flag.strip()] )
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    break
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singular_libs = ['m', 'readline', 'singular', 'givaro', 'ntl', 'gmpxx', 'gmp']
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#########################################################
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### Givaro flags
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#########################################################
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givaro_extra_compile_args =['-D__STDC_LIMIT_MACROS']
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#########################################################
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### PolyBoRi settings
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#########################################################
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polybori_extra_compile_args = []
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polybori_major_version = '0.8'
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#############################################################
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### List of modules
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###
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### Note that the list of modules is sorted alphabetically
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### by extension name. Please keep this list sorted when
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### adding new modules!
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###
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#############################################################
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def uname_specific(name, value, alternative):
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    if name in os.uname()[0]:
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        return value
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    else:
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        return alternative
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ext_modules = [
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    ################################
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    ##
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    ## sage.algebras
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    ##
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    ################################
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    Extension('sage.algebras.quatalg.quaternion_algebra_element',
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               sources = ['sage/algebras/quatalg/quaternion_algebra_element.pyx'],
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               language='c++',
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               libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++", "ntl"],
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               depends = flint_depends),
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    Extension('sage.algebras.letterplace.free_algebra_letterplace',
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              sources = ['sage/algebras/letterplace/free_algebra_letterplace.pyx'],
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              libraries = singular_libs,
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              language="c++",
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              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
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              depends = singular_depends),
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    Extension('sage.algebras.letterplace.free_algebra_element_letterplace',
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              sources = ['sage/algebras/letterplace/free_algebra_element_letterplace.pyx'],
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              libraries = singular_libs,
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              language="c++",
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              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
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              depends = singular_depends),
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    Extension('sage.algebras.letterplace.letterplace_ideal',
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              sources = ['sage/algebras/letterplace/letterplace_ideal.pyx'],
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              libraries = singular_libs,
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              language="c++",
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              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
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              depends = singular_depends),
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    Extension('sage.algebras.quatalg.quaternion_algebra_cython',
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               sources = ['sage/algebras/quatalg/quaternion_algebra_cython.pyx'],
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               language='c++',
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               libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++", "ntl"]),
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    ################################
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    ##
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    ## sage.calculus
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    ##
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    ################################
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    Extension('sage.calculus.var',
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              sources = ['sage/calculus/var.pyx']),
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    Extension('sage.calculus.riemann',
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              sources = ['sage/calculus/riemann.pyx'],
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              include_dirs = numpy_include_dirs,
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              depends = numpy_depends),
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    Extension('sage.calculus.interpolators',
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              sources = ['sage/calculus/interpolators.pyx'],
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              include_dirs = numpy_include_dirs,
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              depends = numpy_depends),
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151

152
    ################################
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    ##
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    ## sage.categories
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    ##
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    ################################
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    Extension('sage.categories.action',
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              sources = ['sage/categories/action.pyx']),
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    Extension('sage.categories.category_singleton',
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              sources = ['sage/categories/category_singleton.pyx']),
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    Extension('sage.categories.functor',
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              sources = ['sage/categories/functor.pyx']),
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    Extension('sage.categories.map',
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              sources = ['sage/categories/map.pyx']),
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    Extension('sage.categories.morphism',
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              sources = ['sage/categories/morphism.pyx']),
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    Extension('sage.categories.examples.semigroups_cython',
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              sources = ['sage/categories/examples/semigroups_cython.pyx']),
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    ################################
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    ##
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    ## sage.coding
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    ##
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    ################################
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    Extension('sage.coding.binary_code',
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              sources = ['sage/coding/binary_code.pyx'],
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              libraries = ['gmp']),
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    Extension('sage.coding.codecan.codecan',
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              sources = ['sage/coding/codecan/codecan.pyx'],
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              libraries = ['gmp', 'flint'],
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              include_dirs = ['sage/groups/perm_gps/partn_ref2/'],
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              depends = flint_depends),
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    Extension('sage.coding.codecan.autgroup_can_label',
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          sources = ['sage/coding/codecan/autgroup_can_label.pyx']),
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    ################################
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    ##
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    ## sage.combinat
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    ##
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    ################################
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    Extension('sage.combinat.expnums',
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              sources = ['sage/combinat/expnums.pyx'],
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              libraries = ['gmp']),
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    Extension('sage.combinat.matrices.dancing_links',
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              sources = ['sage/combinat/matrices/dancing_links.pyx'],
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              libraries = ["stdc++"],
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              language='c++'),
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    Extension('sage.structure.list_clone',
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              sources=['sage/structure/list_clone.pyx']),
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    Extension('sage.structure.list_clone_demo',
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              sources=['sage/structure/list_clone_demo.pyx']),
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    Extension('sage.structure.list_clone_timings_cy',
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              sources=['sage/structure/list_clone_timings_cy.pyx']),
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    Extension('sage.sets.finite_set_map_cy',
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              sources=['sage/sets/finite_set_map_cy.pyx']),
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    Extension('sage.combinat.partitions',
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              sources = ['sage/combinat/partitions.pyx',
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                         'sage/combinat/partitions_c.cc'],
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              libraries = ['gmp', 'mpfr'],
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              depends = ['sage/combinat/partitions_c.h'],
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              language='c++'),
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    Extension('sage.combinat.words.word_datatypes',
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            sources=['sage/combinat/words/word_datatypes.pyx'],
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            include_dirs = ['sage/combinat/words'],
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            libraries = ['stdc++'],
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            language='c++'),
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    Extension('sage.combinat.permutation_cython',
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              sources=['sage/combinat/permutation_cython.pyx']),
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    Extension('sage.combinat.dict_addition',
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              sources=['sage/combinat/dict_addition.pyx']),
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    Extension('sage.combinat.debruijn_sequence',
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              sources=['sage/combinat/debruijn_sequence.pyx']),
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    Extension('sage.combinat.degree_sequences',
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              sources = ['sage/combinat/degree_sequences.pyx']),
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    Extension('sage.combinat.combinat_cython',
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              sources=['sage/combinat/combinat_cython.pyx'],
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              libraries=['gmp']),
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    Extension('sage.combinat.enumeration_mod_permgroup',
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              sources=['sage/combinat/enumeration_mod_permgroup.pyx']),
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    Extension('sage.combinat.q_bernoulli',
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              sources = ['sage/combinat/q_bernoulli.pyx']),
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    Extension('sage.combinat.crystals.letters',
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              sources=['sage/combinat/crystals/letters.pyx']),
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    ################################
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    ##
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    ## sage.crypto
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    ##
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    ################################
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    Extension('sage.crypto.boolean_function',
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              sources = ['sage/crypto/boolean_function.pyx']),
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    ################################
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    ##
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    ## sage.ext
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    ##
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    ################################
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    Extension('sage.ext.c_lib',
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              sources = ['sage/ext/c_lib.pyx']),
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    Extension('sage.ext.fast_callable',
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              sources = ['sage/ext/fast_callable.pyx']),
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    Extension('sage.ext.fast_eval',
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              sources = ['sage/ext/fast_eval.pyx']),
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    Extension('sage.ext.interactive_constructors_c',
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              sources = ['sage/ext/interactive_constructors_c.pyx']),
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    Extension('sage.ext.multi_modular',
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              sources = ['sage/ext/multi_modular.pyx'],
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              extra_compile_args = ['-std=c99'],
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              libraries=['gmp']),
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    Extension('sage.ext.pselect',
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              sources = ['sage/ext/pselect.pyx']),
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    ################################
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    ##
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    ## sage.finance
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    ##
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    ################################
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    Extension('sage.finance.fractal',
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              sources = ['sage/finance/fractal.pyx'],
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              depends = numpy_depends),
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    Extension('sage.finance.markov_multifractal_cython',
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              sources = ['sage/finance/markov_multifractal_cython.pyx']),
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    Extension('sage.finance.option',
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              sources = ['sage/finance/option.pyx']),
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    Extension('sage.finance.time_series',
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              sources = ['sage/finance/time_series.pyx'],
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              include_dirs = numpy_include_dirs,
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              depends = numpy_depends),
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    ################################
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    ##
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    ## sage.functions
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    ##
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    ################################
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    Extension('sage.functions.prime_pi',
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        sources = ['sage/functions/prime_pi.pyx']),
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     ################################
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     ##
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     ## sage.games
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     ##
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     ################################
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     Extension('sage.games.sudoku_backtrack',
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               sources = ['sage/games/sudoku_backtrack.pyx']),
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     ################################
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     ##
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     ## sage.geometry
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     ##
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     ################################
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     Extension('sage.geometry.point_collection',
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               sources = ['sage/geometry/point_collection.pyx']),
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     Extension('sage.geometry.toric_lattice_element',
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               sources = ['sage/geometry/toric_lattice_element.pyx'],
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               libraries=['gmp']),
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     Extension('sage.geometry.integral_points',
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               sources = ['sage/geometry/integral_points.pyx']),
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     Extension('sage.geometry.triangulation.base',
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               sources = ['sage/geometry/triangulation/base.pyx',
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                          'sage/geometry/triangulation/functions.cc',
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                          'sage/geometry/triangulation/data.cc',
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                          'sage/geometry/triangulation/triangulations.cc'],
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               depends = ['sage/geometry/triangulation/functions.h',
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                          'sage/geometry/triangulation/data.h',
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                          'sage/geometry/triangulation/triangulations.h'],
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               language="c++"),
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    ################################
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    ##
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    ## sage.graphs
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    ##
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    ################################
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    Extension('sage.graphs.chrompoly',
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              sources = ['sage/graphs/chrompoly.pyx'],
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              libraries = ['gmp']),
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    Extension('sage.graphs.cliquer',
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              sources = ['sage/graphs/cliquer.pyx', 'sage/graphs/cliquer/cl.c'],
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              libraries = ['cliquer']),
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    Extension('sage.graphs.graph_decompositions.vertex_separation',
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              sources = ['sage/graphs/graph_decompositions/vertex_separation.pyx']),
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    Extension('sage.graphs.graph_decompositions.graph_products',
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              sources = ['sage/graphs/graph_decompositions/graph_products.pyx']),
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    Extension('sage.graphs.convexity_properties',
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              sources = ['sage/graphs/convexity_properties.pyx'],
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              libraries = ['gmp']),
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    Extension('sage.graphs.comparability',
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              sources = ['sage/graphs/comparability.pyx']),
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    Extension('sage.graphs.generic_graph_pyx',
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              sources = ['sage/graphs/generic_graph_pyx.pyx'],
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              libraries = ['gmp']),
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    Extension('sage.graphs.graph_generators_pyx',
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              sources = ['sage/graphs/graph_generators_pyx.pyx']),
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    Extension('sage.graphs.distances_all_pairs',
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              sources = ['sage/graphs/distances_all_pairs.pyx']),
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    Extension('sage.graphs.base.static_dense_graph',
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              sources = ['sage/graphs/base/static_dense_graph.pyx']),
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    Extension('sage.graphs.base.static_sparse_graph',
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              sources = ['sage/graphs/base/static_sparse_graph.pyx'],
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              libraries = ['gmp']),
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    Extension('sage.graphs.base.static_sparse_backend',
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              sources = ['sage/graphs/base/static_sparse_backend.pyx']),
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    Extension('sage.graphs.modular_decomposition.modular_decomposition',
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              sources = ['sage/graphs/modular_decomposition/modular_decomposition.pyx',
410
                         'sage/graphs/modular_decomposition/src/dm.c'],
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              depends = ['sage/graphs/modular_decomposition/src/dm_english.h']),
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    Extension('sage.graphs.weakly_chordal',
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              sources = ['sage/graphs/weakly_chordal.pyx']),
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    Extension('sage.graphs.matchpoly',
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              sources = ['sage/graphs/matchpoly.pyx'],
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              libraries = ['gmp', 'flint'],
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              extra_compile_args = ['-std=c99'],
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              depends = flint_depends),
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    Extension('sage.graphs.planarity',
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              sources = ['sage/graphs/planarity.pyx',
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                         'sage/graphs/planarity_c/graphColorVertices.c',
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                         'sage/graphs/planarity_c/graphColorVertices_Extensions.c',
426
                         'sage/graphs/planarity_c/graphDrawPlanar.c',
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                         'sage/graphs/planarity_c/graphDrawPlanar_Extensions.c',
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                         'sage/graphs/planarity_c/graphEmbed.c',
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                         'sage/graphs/planarity_c/graphExtensions.c',
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                         'sage/graphs/planarity_c/graphIO.c',
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                         'sage/graphs/planarity_c/graphIsolator.c',
432
                         'sage/graphs/planarity_c/graphK23Search.c',
433
                         'sage/graphs/planarity_c/graphK23Search_Extensions.c',
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                         'sage/graphs/planarity_c/graphK33Search.c',
435
                         'sage/graphs/planarity_c/graphK33Search_Extensions.c',
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                         'sage/graphs/planarity_c/graphK4Search.c',
437
                         'sage/graphs/planarity_c/graphK4Search_Extensions.c',
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                         'sage/graphs/planarity_c/graphNonplanar.c',
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                         'sage/graphs/planarity_c/graphOuterplanarObstruction.c',
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                         'sage/graphs/planarity_c/graphPreprocess.c',
441
                         'sage/graphs/planarity_c/graphTests.c',
442
                         'sage/graphs/planarity_c/graphUtils.c',
443
                         'sage/graphs/planarity_c/listcoll.c',
444
                         'sage/graphs/planarity_c/planarity.c',
445
                         'sage/graphs/planarity_c/planarityCommandLine.c',
446
                         'sage/graphs/planarity_c/planarityRandomGraphs.c',
447
                         'sage/graphs/planarity_c/planaritySpecificGraph.c',
448
                         'sage/graphs/planarity_c/planarityUtils.c',
449
                         'sage/graphs/planarity_c/stack.c'],
450
              depends = ['sage/graphs/planarity_c/appconst.h',
451
                         'sage/graphs/planarity_c/graphColorVertices.h',
452
                         'sage/graphs/planarity_c/graphColorVertices.private.h',
453
                         'sage/graphs/planarity_c/graphDrawPlanar.h',
454
                         'sage/graphs/planarity_c/graphDrawPlanar.private.h',
455
                         'sage/graphs/planarity_c/graphExtensions.h',
456
                         'sage/graphs/planarity_c/graphExtensions.private.h',
457
                         'sage/graphs/planarity_c/graphFunctionTable.h',
458
                         'sage/graphs/planarity_c/graph.h',
459
                         'sage/graphs/planarity_c/graphK23Search.h',
460
                         'sage/graphs/planarity_c/graphK23Search.private.h',
461
                         'sage/graphs/planarity_c/graphK33Search.h',
462
                         'sage/graphs/planarity_c/graphK33Search.private.h',
463
                         'sage/graphs/planarity_c/graphK4Search.h',
464
                         'sage/graphs/planarity_c/graphK4Search.private.h',
465
                         'sage/graphs/planarity_c/graphStructures.h',
466
                         'sage/graphs/planarity_c/listcoll.h',
467
                         'sage/graphs/planarity_c/planarity.h',
468
                         'sage/graphs/planarity_c/platformTime.h',
469
                         'sage/graphs/planarity_c/stack.h']),
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471
    Extension('sage.graphs.graph_decompositions.rankwidth',
472
              sources = ['sage/graphs/graph_decompositions/rankwidth.pyx',
473
                         'sage/graphs/graph_decompositions/rankwidth_c/rw.c']),
474

475
    Extension('sage.graphs.spanning_tree',
476
              sources = ['sage/graphs/spanning_tree.pyx']),
477

478
    Extension('sage.graphs.trees',
479
              sources = ['sage/graphs/trees.pyx']),
480

481
    Extension('sage.graphs.genus',
482
              sources = ['sage/graphs/genus.pyx']),
483

484
    Extension('sage.graphs.hyperbolicity',
485
              sources = ['sage/graphs/hyperbolicity.pyx']),
486

487
        ################################
488
        ##
489
        ## sage.graphs.base
490
        ##
491
        ################################
492

493
    Extension('sage.graphs.base.c_graph',
494
              sources = ['sage/graphs/base/c_graph.pyx']),
495

496
    Extension('sage.graphs.base.sparse_graph',
497
              sources = ['sage/graphs/base/sparse_graph.pyx']),
498

499
    Extension('sage.graphs.base.dense_graph',
500
              sources = ['sage/graphs/base/dense_graph.pyx']),
501

502
    ################################
503
    ##
504
    ## sage.groups
505
    ##
506
    ################################
507

508
    Extension('sage.groups.group',
509
              sources = ['sage/groups/group.pyx']),
510

511
    Extension('sage.groups.old',
512
              sources = ['sage/groups/old.pyx']),
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514
    Extension('sage.groups.libgap_wrapper',
515
              sources = ['sage/groups/libgap_wrapper.pyx']),
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517
    Extension('sage.groups.perm_gps.permgroup_element',
518
              sources = ['sage/groups/perm_gps/permgroup_element.pyx']),
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520
    Extension('sage.groups.semimonomial_transformations.semimonomial_transformation',
521
              sources = ['sage/groups/semimonomial_transformations/semimonomial_transformation.pyx']),
522

523
        ###################################
524
        ##
525
        ## sage.groups.perm_gps.partn_ref
526
        ##
527
        ###################################
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529
    Extension('sage.groups.perm_gps.partn_ref.automorphism_group_canonical_label',
530
              sources = ['sage/groups/perm_gps/partn_ref/automorphism_group_canonical_label.pyx'],
531
              libraries = ['gmp', 'flint'],
532
              extra_compile_args = ['-std=c99'],
533
              depends = flint_depends),
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535
    Extension('sage.groups.perm_gps.partn_ref.canonical_augmentation',
536
              sources = ['sage/groups/perm_gps/partn_ref/canonical_augmentation.pyx'],
537
              libraries = ['gmp', 'flint'],
538
              extra_compile_args = ['-std=c99'],
539
              depends = flint_depends),
540

541
    Extension('sage.groups.perm_gps.partn_ref.double_coset',
542
              sources = ['sage/groups/perm_gps/partn_ref/double_coset.pyx'],
543
              libraries = ['gmp', 'flint'],
544
              extra_compile_args = ['-std=c99'],
545
              depends = flint_depends),
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547
    Extension('sage.groups.perm_gps.partn_ref.refinement_binary',
548
              sources = ['sage/groups/perm_gps/partn_ref/refinement_binary.pyx'],
549
              libraries = ['gmp', 'flint'],
550
              extra_compile_args = ['-std=c99'],
551
              depends = flint_depends),
552

553
    Extension('sage.groups.perm_gps.partn_ref.refinement_graphs',
554
              sources = ['sage/groups/perm_gps/partn_ref/refinement_graphs.pyx'],
555
              libraries = ['gmp', 'flint'],
556
              extra_compile_args = ['-std=c99'],
557
              depends = flint_depends),
558

559
    Extension('sage.groups.perm_gps.partn_ref.refinement_lists',
560
              sources = ['sage/groups/perm_gps/partn_ref/refinement_lists.pyx'],
561
              libraries = ['gmp', 'flint'],
562
              extra_compile_args = ['-std=c99'],
563
              depends = flint_depends),
564

565
    Extension('sage.groups.perm_gps.partn_ref.refinement_matrices',
566
              sources = ['sage/groups/perm_gps/partn_ref/refinement_matrices.pyx'],
567
              libraries = ['gmp', 'flint'],
568
              extra_compile_args = ['-std=c99'],
569
              depends = flint_depends),
570

571
    Extension('sage.groups.perm_gps.partn_ref.refinement_python',
572
              sources = ['sage/groups/perm_gps/partn_ref/refinement_python.pyx'],
573
              libraries = ['gmp', 'flint'],
574
              extra_compile_args = ['-std=c99'],
575
              depends = flint_depends),
576

577
    Extension('sage.groups.perm_gps.partn_ref.refinement_sets',
578
              sources = ['sage/groups/perm_gps/partn_ref/refinement_sets.pyx'],
579
              libraries = ['gmp', 'flint'],
580
              extra_compile_args = ['-std=c99'],
581
              depends = flint_depends),
582

583
        ###################################
584
        ##
585
        ## sage.groups.perm_gps.partn_ref2
586
        ##
587
        ###################################
588

589
    Extension('sage.groups.perm_gps.partn_ref2.refinement_generic',
590
              sources = ['sage/groups/perm_gps/partn_ref2/refinement_generic.pyx'],
591
              libraries = ["csage", "flint", "gmp", "gmpxx", "stdc++"],
592
              extra_compile_args=["-std=c99"],
593
              depends = flint_depends +
594
                  ['sage/groups/perm_gps/partn_ref2/refinement_generic.h']),
595

596
    ################################
597
    ##
598
    ## sage.gsl
599
    ##
600
    ################################
601

602
    Extension('sage.gsl.callback',
603
              sources = ['sage/gsl/callback.pyx'],
604
              libraries = ['gsl', BLAS, BLAS2],
605
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
606

607
    Extension('sage.gsl.dwt',
608
              sources = ['sage/gsl/dwt.pyx'],
609
              libraries=['gsl',BLAS],
610
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
611

612
    Extension('sage.gsl.fft',
613
              sources = ['sage/gsl/fft.pyx'],
614
              libraries = ['gsl', BLAS, BLAS2],
615
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
616

617
    Extension('sage.gsl.gsl_array',
618
              sources = ['sage/gsl/gsl_array.pyx'],
619
              libraries=['gsl', BLAS, BLAS2],
620
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
621

622
    Extension('sage.gsl.integration',
623
              sources = ['sage/gsl/integration.pyx'],
624
              define_macros=[('GSL_DISABLE_DEPRECATED','1')],
625
              libraries=['gsl',BLAS, BLAS2]),
626

627
    Extension('sage.gsl.interpolation',
628
              sources = ['sage/gsl/interpolation.pyx'],
629
              libraries = ['gsl', BLAS, BLAS2],
630
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
631

632
    Extension('sage.gsl.ode',
633
              sources = ['sage/gsl/ode.pyx'],
634
              libraries=['gsl',BLAS, BLAS2],
635
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
636

637
    Extension('sage.gsl.probability_distribution',
638
              sources = ['sage/gsl/probability_distribution.pyx'],
639
              libraries=['gsl', BLAS, BLAS2],
640
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
641

642
    ################################
643
    ##
644
    ## sage.interacts
645
    ##
646
    ################################
647

648
    Extension('sage.interacts.library_cython',
649
              sources = ['sage/interacts/library_cython.pyx'],
650
              libraries = []),
651

652
    ################################
653
    ##
654
    ## sage.libs
655
    ##
656
    ################################
657

658
    Extension('sage.libs.ecl',
659
              sources = ["sage/libs/ecl.pyx"],
660
              libraries = ["ecl", "gmp"],
661
              include_dirs = [SAGE_INC + '/ecl'],
662
              depends = [SAGE_INC + '/ecl/ecl.h']),
663

664
    Extension('sage.libs.flint.flint',
665
              sources = ["sage/libs/flint/flint.pyx"],
666
              libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++"],
667
              extra_compile_args = ["-std=c99", "-D_XPG6"],
668
              depends = flint_depends),
669

670
    Extension('sage.libs.flint.fmpz_poly',
671
              sources = ["sage/libs/flint/fmpz_poly.pyx"],
672
              libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++"],
673
              extra_compile_args = ["-std=c99", "-D_XPG6"],
674
              depends = flint_depends),
675

676
    Extension('sage.libs.flint.arith',
677
              sources = ["sage/libs/flint/arith.pyx"],
678
              libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++"],
679
              extra_compile_args = ["-std=c99", "-D_XPG6"],
680
              depends = flint_depends),
681

682
    Extension('sage.libs.fplll.fplll',
683
              sources = ['sage/libs/fplll/fplll.pyx'],
684
              libraries = ['gmp', 'mpfr', 'stdc++', 'fplll'],
685
              language="c++",
686
              include_dirs = [SAGE_INC + '/fplll'],
687
              extra_compile_args=["-DFPLLL_V3_COMPAT"],
688
              depends = [SAGE_INC + "/fplll/fplll.h"]),
689

690
    Extension('sage.libs.linbox.linbox',
691
              sources = ['sage/libs/linbox/linbox.pyx'],
692
              # For this to work on cygwin, linboxsage *must* be
693
              # before ntl.
694
              libraries = ['linboxsage', 'ntl', 'iml', 'linbox',
695
                           'stdc++', 'givaro', 'mpfr', 'gmp', 'gmpxx', BLAS, BLAS2],
696
              language = 'c++',
697
              extra_compile_args = givaro_extra_compile_args,
698
              depends = [SAGE_INC + '/givaro/givconfig.h']),
699

700
    Extension('sage.libs.lcalc.lcalc_Lfunction',
701
              sources = ['sage/libs/lcalc/lcalc_Lfunction.pyx'],
702
              libraries = ['m', 'ntl', 'mpfr', 'gmp', 'gmpxx',
703
                           'Lfunction', 'stdc++'],
704
              include_dirs = [SAGE_INC + "/libLfunction"],
705
              extra_compile_args=["-O3", "-ffast-math"],
706
              language = 'c++'),
707

708

709

710
    Extension('sage.libs.libecm',
711
              sources = ['sage/libs/libecm.pyx'],
712
              libraries = ['ecm', 'gmp'],
713
              extra_link_args = uname_specific("Linux", ["-Wl,-z,noexecstack"],
714
                                                        []),
715
              depends = [SAGE_INC + "/ecm.h"]),
716

717
    Extension('sage.libs.mwrank.mwrank',
718
              sources = ["sage/libs/mwrank/mwrank.pyx",
719
                         "sage/libs/mwrank/wrap.cc"],
720
              define_macros = [("NTL_ALL",None)],
721
              depends = ["sage/libs/mwrank/wrap.h"] +
722
                        [ SAGE_INC + "/eclib/" + h for h in
723
                          ["curve.h","egr.h","descent.h","points.h","isogs.h",
724
                            "marith.h","htconst.h","interface.h"]
725
                        ],
726
              libraries = ["ec",
727
                           "ntl", "pari", "gmp", "gmpxx", "stdc++", "m"]),
728

729
    Extension('sage.libs.pari.gen',
730
              sources = ["sage/libs/pari/gen.pyx"],
731
              libraries = ['pari', 'gmp']),
732

733
    Extension('sage.libs.pari.handle_error',
734
              sources = ["sage/libs/pari/handle_error.pyx"],
735
              libraries = ['pari', 'gmp']),
736

737
    Extension('sage.libs.pari.pari_instance',
738
              sources = ["sage/libs/pari/pari_instance.pyx"],
739
              libraries = ['pari', 'gmp']),
740

741
    Extension('sage.libs.ppl',
742
              sources = ['sage/libs/ppl.pyx', 'sage/libs/ppl_shim.cc'],
743
              libraries = ['ppl', 'gmpxx', 'gmp', 'm'],
744
              language="c++",
745
              depends = [SAGE_INC + "/ppl.hh"]),
746

747
    Extension('sage.libs.ratpoints',
748
              sources = ["sage/libs/ratpoints.pyx"],
749
              depends = [SAGE_INC + '/ratpoints.h'],
750
              libraries = ["ratpoints", "gmp"]),
751

752
    Extension('sage.libs.readline',
753
              sources = ['sage/libs/readline.pyx'],
754
              libraries = ['readline']),
755

756
    Extension('sage.libs.singular.singular',
757
              sources = ['sage/libs/singular/singular.pyx'],
758
              libraries = singular_libs,
759
              language="c++",
760
              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
761
              depends = singular_depends,
762
              extra_compile_args = givaro_extra_compile_args),
763

764
    Extension('sage.libs.singular.polynomial',
765
              sources = ['sage/libs/singular/polynomial.pyx'],
766
              libraries = singular_libs,
767
              language="c++",
768
              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
769
              depends = singular_depends,
770
              extra_compile_args = givaro_extra_compile_args),
771

772
    Extension('sage.libs.singular.ring',
773
              sources = ['sage/libs/singular/ring.pyx'],
774
              libraries = singular_libs,
775
              language="c++",
776
              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
777
              depends = singular_depends,
778
              extra_compile_args = givaro_extra_compile_args),
779

780
    Extension('sage.libs.singular.groebner_strategy',
781
              sources = ['sage/libs/singular/groebner_strategy.pyx'],
782
              libraries = singular_libs,
783
              language="c++",
784
              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
785
              depends = singular_depends,
786
              extra_compile_args = givaro_extra_compile_args),
787

788
    Extension('sage.libs.singular.function',
789
              sources = ['sage/libs/singular/function.pyx'],
790
              libraries = singular_libs,
791
              language="c++",
792
              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
793
              depends = singular_depends,
794
              extra_compile_args = givaro_extra_compile_args),
795

796
    Extension('sage.libs.singular.option',
797
              sources = ['sage/libs/singular/option.pyx'],
798
              libraries = singular_libs,
799
              language="c++",
800
              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
801
              depends = singular_depends,
802
              extra_compile_args = givaro_extra_compile_args),
803

804
    Extension('sage.libs.symmetrica.symmetrica',
805
              sources = ["sage/libs/symmetrica/%s"%s for s in ["symmetrica.pyx"]],
806
              include_dirs = ['/usr/include/malloc/'],
807
              libraries = ["symmetrica"],
808
              depends = [SAGE_INC + "/symmetrica/def.h"]),
809

810
    Extension('sage.libs.mpmath.utils',
811
              sources = ["sage/libs/mpmath/utils.pyx"],
812
              libraries = ['mpfr', 'gmp']),
813

814
    Extension('sage.libs.mpmath.ext_impl',
815
              sources = ["sage/libs/mpmath/ext_impl.pyx"],
816
              libraries = ['mpfr', 'gmp']),
817

818
    Extension('sage.libs.mpmath.ext_main',
819
              sources = ["sage/libs/mpmath/ext_main.pyx"],
820
              libraries = ['gmp']),
821

822
    Extension('sage.libs.mpmath.ext_libmp',
823
              sources = ["sage/libs/mpmath/ext_libmp.pyx"],
824
              libraries = ['gmp']),
825

826
        ################################
827
        ##
828
        ## sage.libs.gap
829
        ##
830
        ################################
831

832
    Extension('sage.libs.gap.util',
833
              sources = ["sage/libs/gap/util.pyx"],
834
              libraries = ['csage', 'gmp', 'gap', 'm'],
835
              include_dirs = [SAGE_INC]),
836

837
    Extension('sage.libs.gap.element',
838
              sources = ["sage/libs/gap/element.pyx"],
839
              libraries = ['csage', 'gmp', 'gap', 'm'],
840
              include_dirs = [SAGE_INC]),
841

842
    # Extension('sage.libs.gap.type',
843
    #           sources = ["sage/libs/gap/type.pyx"],
844
    #           libraries = ['csage', 'gmp', 'gap', 'm'],
845
    #           include_dirs = [SAGE_INC]),
846

847
    Extension('sage.libs.gap.libgap',
848
              sources = ["sage/libs/gap/libgap.pyx"],
849
              libraries = ['csage', 'gmp', 'gap', 'm'],
850
              include_dirs = [SAGE_INC]),
851

852
        ###################################
853
        ##
854
        ## sage.libs.cremona
855
        ##
856
        ###################################
857

858
    Extension('sage.libs.cremona.homspace',
859
              sources = ["sage/libs/cremona/homspace.pyx"],
860
              libraries = ['ec', 'ntl', 'pari',
861
                           'gmpxx', 'gmp', 'm', 'stdc++'],
862
              language='c++',
863
              define_macros = [("NTL_ALL",None)],
864
              depends = [ SAGE_INC + "/eclib/" + h for h in
865
                          ["interface.h","bigrat.h","rat.h","curve.h",
866
                           "moddata.h","symb.h","cusp.h","homspace.h","mat.h"]
867
                        ]),
868

869
    Extension('sage.libs.cremona.mat',
870
              sources = ["sage/libs/cremona/mat.pyx"],
871
              libraries = ['ec', 'ntl', 'pari',
872
                           'gmpxx', 'gmp', 'm', 'stdc++'],
873
              language='c++',
874
              define_macros = [("NTL_ALL",None)],
875
              depends = [ SAGE_INC + "/eclib/" + h for h in
876
                          ["interface.h","bigrat.h","rat.h","curve.h",
877
                           "moddata.h","symb.h","cusp.h","homspace.h","mat.h"]
878
                        ]),
879

880
    Extension('sage.libs.cremona.newforms',
881
              sources = ["sage/libs/cremona/newforms.pyx"],
882
              libraries = ['ec', 'ntl', 'pari',
883
                           'gmpxx', 'gmp', 'm', 'stdc++'],
884
              language='c++',
885
              define_macros = [("NTL_ALL",None)],
886
              depends = [ SAGE_INC + "/eclib/" + h for h in
887
                          ["interface.h","bigrat.h","rat.h","curve.h",
888
                           "moddata.h","symb.h","cusp.h","xsplit.h","method.h",
889
                           "oldforms.h","homspace.h","cperiods.h","newforms.h"]
890
                        ]),
891

892
        ###################################
893
        ##
894
        ## sage.libs.ntl
895
        ##
896
        ###################################
897

898
    # NOTE: It is *very* important (for cygwin) that csage be the
899
    # first library listed for all ntl extensions below.
900

901
    Extension('sage.libs.ntl.ntl_GF2',
902
              sources = ["sage/libs/ntl/ntl_GF2.pyx"],
903
              libraries = ["csage", "ntl", "gmp", "gmpxx", "stdc++"],
904
              language='c++'),
905

906
    Extension('sage.libs.ntl.ntl_GF2E',
907
              sources = ["sage/libs/ntl/ntl_GF2E.pyx"],
908
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
909
              language='c++'),
910

911
    Extension('sage.libs.ntl.ntl_GF2EContext',
912
              sources = ["sage/libs/ntl/ntl_GF2EContext.pyx"],
913
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
914
              language='c++'),
915

916
    Extension('sage.libs.ntl.ntl_GF2EX',
917
              sources = ["sage/libs/ntl/ntl_GF2EX.pyx"],
918
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
919
              language='c++'),
920

921
    Extension('sage.libs.ntl.ntl_GF2X',
922
              sources = ["sage/libs/ntl/ntl_GF2X.pyx"],
923
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
924
              language='c++'),
925

926
    Extension('sage.libs.ntl.ntl_lzz_p',
927
              sources = ["sage/libs/ntl/ntl_lzz_p.pyx"],
928
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
929
              language='c++'),
930

931
    Extension('sage.libs.ntl.ntl_lzz_pContext',
932
              sources = ["sage/libs/ntl/ntl_lzz_pContext.pyx"],
933
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
934
              language='c++'),
935

936
    Extension('sage.libs.ntl.ntl_lzz_pX',
937
              sources = ["sage/libs/ntl/ntl_lzz_pX.pyx"],
938
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
939
              language='c++'),
940

941
    Extension('sage.libs.ntl.ntl_mat_GF2',
942
              sources = ["sage/libs/ntl/ntl_mat_GF2.pyx"],
943
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
944
              language='c++'),
945

946
    Extension('sage.libs.ntl.ntl_mat_GF2E',
947
              sources = ["sage/libs/ntl/ntl_mat_GF2E.pyx"],
948
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
949
              language='c++'),
950

951
    Extension('sage.libs.ntl.ntl_mat_ZZ',
952
              sources = ["sage/libs/ntl/ntl_mat_ZZ.pyx"],
953
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
954
              language='c++'),
955

956
    Extension('sage.libs.ntl.ntl_ZZ',
957
              sources = ["sage/libs/ntl/ntl_ZZ.pyx"],
958
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
959
              language='c++'),
960

961
    Extension('sage.libs.ntl.ntl_ZZX',
962
              sources = ["sage/libs/ntl/ntl_ZZX.pyx"],
963
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
964
              language='c++'),
965

966
    Extension('sage.libs.ntl.ntl_ZZ_p',
967
              sources = ["sage/libs/ntl/ntl_ZZ_p.pyx"],
968
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
969
              language='c++'),
970

971
    Extension('sage.libs.ntl.ntl_ZZ_pContext',
972
              sources = ["sage/libs/ntl/ntl_ZZ_pContext.pyx"],
973
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
974
              language='c++'),
975

976
    Extension('sage.libs.ntl.ntl_ZZ_pE',
977
              sources = ["sage/libs/ntl/ntl_ZZ_pE.pyx"],
978
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
979
              language='c++'),
980

981
    Extension('sage.libs.ntl.ntl_ZZ_pEContext',
982
              sources = ["sage/libs/ntl/ntl_ZZ_pEContext.pyx"],
983
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
984
              language='c++'),
985

986
    Extension('sage.libs.ntl.ntl_ZZ_pEX',
987
              sources = ["sage/libs/ntl/ntl_ZZ_pEX.pyx"],
988
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
989
              language='c++'),
990

991
    Extension('sage.libs.ntl.ntl_ZZ_pX',
992
              sources = ["sage/libs/ntl/ntl_ZZ_pX.pyx"],
993
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
994
              language='c++'),
995

996
    ################################
997
    ##
998
    ## sage.matrix
999
    ##
1000
    ################################
1001

1002
    Extension('sage.matrix.action',
1003
              sources = ['sage/matrix/action.pyx']),
1004

1005
    Extension('sage.matrix.change_ring',
1006
              sources = ['sage/matrix/change_ring.pyx'],
1007
              libraries=[BLAS, BLAS2, 'gmp'],
1008
              include_dirs = numpy_include_dirs),
1009

1010
    Extension('sage.matrix.matrix',
1011
              sources = ['sage/matrix/matrix.pyx']),
1012

1013
    Extension('sage.matrix.matrix0',
1014
              sources = ['sage/matrix/matrix0.pyx']),
1015

1016
    Extension('sage.matrix.matrix1',
1017
              sources = ['sage/matrix/matrix1.pyx'],
1018
              depends = numpy_depends),
1019

1020
    Extension('sage.matrix.matrix2',
1021
              sources = ['sage/matrix/matrix2.pyx']),
1022

1023
    Extension('sage.matrix.matrix_complex_double_dense',
1024
              sources = ['sage/matrix/matrix_complex_double_dense.pyx'],
1025
              libraries=[BLAS, BLAS2],
1026
              include_dirs = numpy_include_dirs,
1027
              depends = numpy_depends),
1028

1029
    Extension('sage.matrix.matrix_cyclo_dense',
1030
              sources = ['sage/matrix/matrix_cyclo_dense.pyx'],
1031
              language = "c++",
1032
              libraries=['ntl', 'gmp']),
1033

1034
    Extension('sage.matrix.matrix_dense',
1035
              sources = ['sage/matrix/matrix_dense.pyx']),
1036

1037
    Extension('sage.matrix.matrix_double_dense',
1038
              sources = ['sage/matrix/matrix_double_dense.pyx'],
1039
              libraries=[BLAS, BLAS2],
1040
              include_dirs = numpy_include_dirs,
1041
              depends = numpy_depends),
1042

1043
    Extension('sage.matrix.matrix_generic_dense',
1044
              sources = ['sage/matrix/matrix_generic_dense.pyx']),
1045

1046
    Extension('sage.matrix.matrix_generic_sparse',
1047
              sources = ['sage/matrix/matrix_generic_sparse.pyx']),
1048

1049
    Extension('sage.matrix.matrix_integer_2x2',
1050
              sources = ['sage/matrix/matrix_integer_2x2.pyx'],
1051
              libraries = ['gmp']),
1052

1053
    # TODO -- change to use BLAS at some point.
1054
    Extension('sage.matrix.matrix_integer_dense',
1055
              sources = ['sage/matrix/matrix_integer_dense.pyx'],
1056
              extra_compile_args = m4ri_extra_compile_args,
1057
              depends = [SAGE_INC + '/m4ri/m4ri.h'],
1058
              # order matters for cygwin!!
1059
              libraries = ['iml', 'pari', 'gmp', 'm', BLAS, BLAS2]),
1060

1061
    Extension('sage.matrix.matrix_integer_sparse',
1062
              sources = ['sage/matrix/matrix_integer_sparse.pyx'],
1063
              libraries = ['gmp']),
1064

1065
    Extension('sage.matrix.matrix_mod2_dense',
1066
              sources = ['sage/matrix/matrix_mod2_dense.pyx'],
1067
              libraries = ['gmp','m4ri', 'gd', 'png12', 'z'],
1068
              extra_compile_args = m4ri_extra_compile_args,
1069
              depends = [SAGE_INC + "/png.h", SAGE_INC + "/m4ri/m4ri.h"]),
1070

1071
    Extension('sage.matrix.matrix_mod2e_dense',
1072
              sources = ['sage/matrix/matrix_mod2e_dense.pyx'],
1073
              libraries = ['m4rie', 'm4ri', 'm'],
1074
              depends = [SAGE_INC + "/m4rie/m4rie.h"],
1075
              include_dirs = [SAGE_INC + '/m4rie'],
1076
              extra_compile_args = m4ri_extra_compile_args,
1077
              language="c"),
1078

1079
    Extension('sage.matrix.matrix_modn_dense',
1080
              sources = ['sage/matrix/matrix_modn_dense.pyx'],
1081
              libraries = ['gmp']),
1082

1083
    Extension('sage.matrix.matrix_modn_dense_float',
1084
              sources = ['sage/matrix/matrix_modn_dense_float.pyx'],
1085
              language="c++",
1086
              libraries = ['linbox', 'givaro', 'mpfr', 'gmpxx', 'gmp', BLAS, BLAS2],
1087
              extra_compile_args = ['-DDISABLE_COMMENTATOR'] + givaro_extra_compile_args),
1088

1089
    Extension('sage.matrix.matrix_modn_dense_double',
1090
              sources = ['sage/matrix/matrix_modn_dense_double.pyx'],
1091
              language="c++",
1092
              libraries = ['linbox', 'givaro', 'mpfr', 'gmpxx', 'gmp', BLAS, BLAS2],
1093
              extra_compile_args = ['-DDISABLE_COMMENTATOR'] + givaro_extra_compile_args),
1094

1095
    Extension('sage.matrix.matrix_modn_sparse',
1096
              sources = ['sage/matrix/matrix_modn_sparse.pyx'],
1097
              libraries = ['gmp']),
1098

1099
    Extension('sage.matrix.matrix_mpolynomial_dense',
1100
              sources = ['sage/matrix/matrix_mpolynomial_dense.pyx'],
1101
              libraries = singular_libs,
1102
              language="c++",
1103
              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
1104
              depends = singular_depends,
1105
              extra_compile_args = givaro_extra_compile_args),
1106

1107
    Extension('sage.matrix.matrix_rational_dense',
1108
              sources = ['sage/matrix/matrix_rational_dense.pyx'],
1109
              libraries = ['pari', 'gmp']),
1110

1111
    Extension('sage.matrix.matrix_rational_sparse',
1112
              sources = ['sage/matrix/matrix_rational_sparse.pyx'],
1113
              libraries = ['gmp']),
1114

1115
    Extension('sage.matrix.matrix_real_double_dense',
1116
              sources = ['sage/matrix/matrix_real_double_dense.pyx'],
1117
              libraries=[BLAS, BLAS2],
1118
              include_dirs = numpy_include_dirs,
1119
              depends = numpy_depends),
1120

1121
    Extension('sage.matrix.matrix_sparse',
1122
              sources = ['sage/matrix/matrix_sparse.pyx']),
1123

1124
    Extension('sage.matrix.matrix_symbolic_dense',
1125
              sources = ['sage/matrix/matrix_symbolic_dense.pyx']),
1126

1127
    Extension('sage.matrix.matrix_window',
1128
              sources = ['sage/matrix/matrix_window.pyx']),
1129

1130
    Extension('sage.matrix.matrix_window_modn_dense',
1131
              sources = ['sage/matrix/matrix_window_modn_dense.pyx']),
1132

1133
    Extension('sage.matrix.misc',
1134
              sources = ['sage/matrix/misc.pyx'],
1135
              libraries=['mpfr','gmp']),
1136

1137
    Extension('sage.matrix.strassen',
1138
              sources = ['sage/matrix/strassen.pyx']),
1139

1140
    ################################
1141
    ##
1142
    ## sage.matroids
1143
    ##
1144
    ################################
1145

1146
    Extension('sage.matroids.matroid',
1147
            ['sage/matroids/matroid.pyx']),
1148

1149
    Extension('sage.matroids.extension',
1150
            ['sage/matroids/extension.pyx']),
1151

1152
    Extension('sage.matroids.set_system',
1153
            ['sage/matroids/set_system.pyx'],
1154
              libraries = ['gmp']),
1155

1156
    Extension('sage.matroids.lean_matrix',
1157
            ['sage/matroids/lean_matrix.pyx'],
1158
              libraries = ['gmp']),
1159

1160
    Extension('sage.matroids.basis_exchange_matroid',
1161
            ['sage/matroids/basis_exchange_matroid.pyx'],
1162
              libraries = ['gmp']),
1163

1164
    Extension('sage.matroids.basis_matroid',
1165
            ['sage/matroids/basis_matroid.pyx'],
1166
              libraries = ['gmp']),
1167

1168
    Extension('sage.matroids.linear_matroid',
1169
            ['sage/matroids/linear_matroid.pyx']),
1170

1171
    Extension('sage.matroids.circuit_closures_matroid',
1172
            ['sage/matroids/circuit_closures_matroid.pyx']),
1173

1174
    Extension('sage.matroids.unpickling',
1175
            ['sage/matroids/unpickling.pyx']),
1176

1177
    ################################
1178
    ##
1179
    ## sage.media
1180
    ##
1181
    ################################
1182

1183
    Extension('sage.media.channels',
1184
              sources = ['sage/media/channels.pyx']),
1185

1186
    ################################
1187
    ##
1188
    ## sage.misc
1189
    ##
1190
    ################################
1191

1192
    Extension('sage.misc.allocator',
1193
              sources = ['sage/misc/allocator.pyx']),
1194

1195
    Extension('sage.misc.bitset',
1196
              sources = ['sage/misc/bitset.pyx'],
1197
              libraries = ['gmp']),
1198

1199
    Extension('sage.misc.cachefunc',
1200
              sources = ['sage/misc/cachefunc.pyx']),
1201

1202
    Extension('sage.misc.citation',
1203
              sources = ['sage/misc/citation.pyx']),
1204

1205
    Extension('sage.misc.constant_function',
1206
              sources = ['sage/misc/constant_function.pyx']),
1207

1208
    Extension('sage.misc.cython_c',
1209
              sources = ['sage/misc/cython_c.pyx']),
1210

1211
    Extension('sage.misc.c3',
1212
              sources = ['sage/misc/c3.pyx']),
1213

1214
    Extension('sage.misc.c3_controlled',
1215
              sources = ['sage/misc/c3_controlled.pyx']),
1216

1217
    Extension('sage.misc.derivative',
1218
              sources = ['sage/misc/derivative.pyx']),
1219

1220
    Extension('sage.misc.fpickle',
1221
              sources = ['sage/misc/fpickle.pyx']),
1222

1223
    Extension('sage.misc.function_mangling',
1224
              sources = ['sage/misc/function_mangling.pyx']),
1225

1226
    Extension('sage.misc.lazy_attribute',
1227
              sources = ['sage/misc/lazy_attribute.pyx']),
1228

1229
    Extension('sage.misc.inputhook',
1230
              sources = ['sage/misc/inputhook.pyx']),
1231

1232
    Extension('sage.misc.lazy_import',
1233
              sources = ['sage/misc/lazy_import.pyx']),
1234

1235
    Extension('sage.misc.lazy_list',
1236
              sources = ['sage/misc/lazy_list.pyx']),
1237

1238
    Extension('sage.misc.misc_c',
1239
              sources = ['sage/misc/misc_c.pyx']),
1240

1241
    Extension('sage.misc.nested_class',
1242
              sources = ['sage/misc/nested_class.pyx']),
1243

1244
    Extension('sage.misc.parser',
1245
              sources = ['sage/misc/parser.pyx']),
1246

1247
    Extension('sage.misc.pickle_old',
1248
              sources = ['sage/misc/pickle_old.pyx']),
1249

1250
    Extension('sage.misc.randstate',
1251
              sources = ['sage/misc/randstate.pyx'],
1252
              libraries = ['gmp']),
1253

1254
    Extension('sage.misc.readline_extra_commands',
1255
              sources = ['sage/misc/readline_extra_commands.pyx'],
1256
              libraries = ['readline']),
1257

1258
    Extension('sage.misc.refcount',
1259
              sources = ['sage/misc/refcount.pyx']),
1260

1261
    Extension('sage.misc.reset',
1262
              sources = ['sage/misc/reset.pyx']),
1263

1264
    Extension('sage.misc.sage_timeit_class',
1265
              sources = ['sage/misc/sage_timeit_class.pyx']),
1266

1267
    Extension('sage.misc.classcall_metaclass',
1268
              sources = ['sage/misc/classcall_metaclass.pyx']),
1269

1270
    Extension('sage.misc.fast_methods',
1271
              sources = ['sage/misc/fast_methods.pyx']),
1272

1273
    Extension('sage.misc.binary_tree',
1274
              sources = ['sage/misc/binary_tree.pyx']),
1275

1276
    Extension('sage.misc.search',
1277
              sources = ['sage/misc/search.pyx']),
1278

1279
    Extension('sage.misc.session',
1280
              sources = ['sage/misc/session.pyx']),
1281

1282
    Extension('sage.misc.stopgap',
1283
              sources = ['sage/misc/stopgap.pyx']),
1284

1285
    Extension('sage.misc.weak_dict',
1286
              sources = ['sage/misc/weak_dict.pyx']),
1287

1288
    ################################
1289
    ##
1290
    ## sage.modular
1291
    ##
1292
    ################################
1293

1294
    Extension('sage.modular.arithgroup.congroup_pyx',
1295
              sources = ['sage/modular/arithgroup/congroup_pyx.pyx']),
1296

1297
    Extension('sage.modular.arithgroup.farey_symbol',
1298
              sources = ['sage/modular/arithgroup/farey_symbol.pyx',
1299
                         'sage/modular/arithgroup/farey.cpp',
1300
                         'sage/modular/arithgroup/sl2z.cpp'],
1301
              libraries = ['gmpxx', 'gmp'],
1302
              language = 'c++'),
1303

1304
    Extension('sage.modular.arithgroup.arithgroup_element',
1305
              sources = ['sage/modular/arithgroup/arithgroup_element.pyx']),
1306

1307
    Extension('sage.modular.modform.eis_series_cython',
1308
              sources = ['sage/modular/modform/eis_series_cython.pyx'],
1309
              libraries = ["gmp", "flint"],
1310
              extra_compile_args = ['-std=c99'],
1311
              depends = flint_depends),
1312

1313
    Extension('sage.modular.modsym.apply',
1314
              sources = ['sage/modular/modsym/apply.pyx'],
1315
              libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++"],
1316
              extra_compile_args=["-std=c99",  "-D_XPG6"],
1317
              depends = flint_depends),
1318

1319
    Extension('sage.modular.modsym.relation_matrix_pyx',
1320
              sources = ['sage/modular/modsym/relation_matrix_pyx.pyx']),
1321

1322
    Extension('sage.modular.modsym.heilbronn',
1323
              sources = ['sage/modular/modsym/heilbronn.pyx'],
1324
              libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++"],
1325
              extra_compile_args=["-std=c99", "-D_XPG6"],
1326
              depends = flint_depends),
1327

1328
    Extension('sage.modular.modsym.p1list',
1329
              sources = ['sage/modular/modsym/p1list.pyx'],
1330
              libraries = ['gmp']),
1331

1332
    ################################
1333
    ##
1334
    ## sage.modules
1335
    ##
1336
    ################################
1337

1338
    Extension('sage.modules.finite_submodule_iter',
1339
              sources = ['sage/modules/finite_submodule_iter.pyx']),
1340

1341
    Extension('sage.modules.free_module_element',
1342
              sources = ['sage/modules/free_module_element.pyx'],
1343
              depends = numpy_depends),
1344

1345
    Extension('sage.modules.module',
1346
              sources = ['sage/modules/module.pyx']),
1347

1348
    Extension('sage.modules.vector_complex_double_dense',
1349
              ['sage/modules/vector_complex_double_dense.pyx'],
1350
              libraries = [BLAS, BLAS2],
1351
              include_dirs = numpy_include_dirs,
1352
              depends = numpy_depends),
1353

1354
    Extension('sage.modules.vector_double_dense',
1355
              ['sage/modules/vector_double_dense.pyx'],
1356
              libraries = [BLAS, BLAS2],
1357
              include_dirs = numpy_include_dirs,
1358
              depends = numpy_depends),
1359

1360
    Extension('sage.modules.vector_integer_dense',
1361
              sources = ['sage/modules/vector_integer_dense.pyx'],
1362
              libraries = ['gmp']),
1363

1364
    Extension('sage.modules.vector_modn_dense',
1365
              extra_compile_args = ['-std=c99'],
1366
              sources = ['sage/modules/vector_modn_dense.pyx']),
1367

1368
    Extension('sage.modules.vector_mod2_dense',
1369
              sources = ['sage/modules/vector_mod2_dense.pyx'],
1370
              libraries = ['gmp','m4ri', 'png12', 'gd'],
1371
              extra_compile_args = m4ri_extra_compile_args,
1372
              depends = [SAGE_INC + "/png.h", SAGE_INC + "/m4ri/m4ri.h"]),
1373

1374
    Extension('sage.modules.vector_rational_dense',
1375
              sources = ['sage/modules/vector_rational_dense.pyx'],
1376
              libraries = ['gmp']),
1377

1378
    Extension('sage.modules.vector_real_double_dense',
1379
              ['sage/modules/vector_real_double_dense.pyx'],
1380
              libraries = [BLAS, BLAS2],
1381
              include_dirs = numpy_include_dirs,
1382
              depends = numpy_depends),
1383

1384
    # Extension('sage.modules.vector_rational_sparse',
1385
    #           sources = ['sage/modules/vector_rational_sparse.pyx'],
1386
    #           libraries = ['gmp']),
1387

1388
    ################################
1389
    ##
1390
    ## sage.numerical
1391
    ##
1392
    ################################
1393

1394

1395
    Extension("sage.numerical.mip",
1396
              ["sage/numerical/mip.pyx"],
1397
              include_dirs=[SAGE_INC],
1398
              libraries=["csage","stdc++"]),
1399

1400
    Extension("sage.numerical.linear_functions",
1401
              ["sage/numerical/linear_functions.pyx"],
1402
              include_dirs=[SAGE_INC],
1403
              libraries=["csage","stdc++"]),
1404

1405
    Extension("sage.numerical.backends.generic_backend",
1406
              ["sage/numerical/backends/generic_backend.pyx"],
1407
              include_dirs = [SAGE_INC, "sage/c_lib/include/"],
1408
              libraries=["csage", "stdc++"]),
1409

1410
    Extension("sage.numerical.backends.glpk_backend",
1411
              ["sage/numerical/backends/glpk_backend.pyx"],
1412
              include_dirs = [SAGE_INC, "sage/c_lib/include/"],
1413
              language = 'c++',
1414
              libraries=["csage", "stdc++", "glpk", "gmp", "z"]),
1415

1416
    Extension("sage.numerical.backends.ppl_backend",
1417
              ["sage/numerical/backends/ppl_backend.pyx"],
1418
              include_dirs = [SAGE_INC, "sage/c_lib/include/"],
1419
              libraries=["csage", "stdc++"]),
1420

1421
    Extension("sage.numerical.backends.glpk_graph_backend",
1422
              ["sage/numerical/backends/glpk_graph_backend.pyx"],
1423
              include_dirs = [SAGE_INC, "sage/c_lib/include/"],
1424
              language = 'c++',
1425
              libraries=["csage", "stdc++", "glpk", "gmp", "z"]),
1426

1427
    ################################
1428
    ##
1429
    ## sage.plot
1430
    ##
1431
    ################################
1432

1433
    Extension('sage.plot.complex_plot',
1434
              sources = ['sage/plot/complex_plot.pyx'],
1435
              include_dirs = numpy_include_dirs,
1436
              depends = numpy_depends),
1437

1438
    Extension('sage.plot.plot3d.base',
1439
              sources = ['sage/plot/plot3d/base.pyx'],
1440
              extra_compile_args=["-std=c99"]),
1441

1442
    Extension('sage.plot.plot3d.implicit_surface',
1443
              sources = ['sage/plot/plot3d/implicit_surface.pyx'],
1444
              libraries = ['gsl'],
1445
              include_dirs = numpy_include_dirs,
1446
              depends = numpy_depends),
1447

1448
    Extension('sage.plot.plot3d.index_face_set',
1449
              sources = ['sage/plot/plot3d/index_face_set.pyx'],
1450
              extra_compile_args=["-std=c99"]),
1451

1452
    Extension('sage.plot.plot3d.parametric_surface',
1453
              sources = ['sage/plot/plot3d/parametric_surface.pyx']),
1454

1455
    Extension('sage.plot.plot3d.shapes',
1456
              sources = ['sage/plot/plot3d/shapes.pyx']),
1457

1458
    Extension('sage.plot.plot3d.transform',
1459
              sources = ['sage/plot/plot3d/transform.pyx']),
1460

1461
    ################################
1462
    ##
1463
    ## sage.quadratic_forms
1464
    ##
1465
    ################################
1466

1467
    Extension('sage.quadratic_forms.count_local_2',
1468
              sources = ['sage/quadratic_forms/count_local_2.pyx'],
1469
              libraries = ['gmp']),
1470

1471
    Extension('sage.quadratic_forms.quadratic_form__evaluate',
1472
              sources = ['sage/quadratic_forms/quadratic_form__evaluate.pyx']),
1473

1474

1475
    Extension('sage.quadratic_forms.ternary',
1476
              sources = ['sage/quadratic_forms/ternary.pyx']),
1477

1478
    ################################
1479
    ##
1480
    ## sage.rings
1481
    ##
1482
    ################################
1483

1484
    Extension('sage.rings.bernmm',
1485
              sources = ['sage/rings/bernmm.pyx',
1486
                         'sage/rings/bernmm/bern_modp.cpp',
1487
                         'sage/rings/bernmm/bern_modp_util.cpp',
1488
                         'sage/rings/bernmm/bern_rat.cpp'],
1489
              libraries = ['ntl', 'gmp', 'stdc++', 'pthread'],
1490
              depends = ['sage/rings/bernmm/bern_modp.h',
1491
                         'sage/rings/bernmm/bern_modp_util.h',
1492
                         'sage/rings/bernmm/bern_rat.h'],
1493
              language = 'c++',
1494
              define_macros=[('USE_THREADS', '1'),
1495
                             ('THREAD_STACK_SIZE', '4096')]),
1496

1497
    Extension('sage.rings.bernoulli_mod_p',
1498
              sources = ['sage/rings/bernoulli_mod_p.pyx'],
1499
              libraries=['ntl','stdc++'],
1500
              language = 'c++',
1501
              include_dirs = ['sage/libs/ntl/']),
1502

1503
    Extension('sage.rings.complex_double',
1504
              sources = ['sage/rings/complex_double.pyx'],
1505
              extra_compile_args=["-std=c99",  "-D_XPG6"],
1506
              libraries = (['gsl', BLAS, BLAS2, 'pari', 'gmp', 'm'])),
1507

1508
    Extension('sage.rings.complex_interval',
1509
              sources = ['sage/rings/complex_interval.pyx'],
1510
              libraries = ['mpfi', 'mpfr', 'gmp']),
1511

1512
    Extension('sage.rings.complex_number',
1513
              sources = ['sage/rings/complex_number.pyx'],
1514
              libraries = ['mpfr', 'gmp'],
1515
              depends = numpy_depends),
1516

1517
    Extension('sage.rings.integer',
1518
              sources = ['sage/rings/integer.pyx'],
1519
              libraries=['ntl', 'pari', 'flint', 'gmp'],
1520
              depends = numpy_depends + flint_depends),
1521

1522
    Extension('sage.rings.integer_ring',
1523
              sources = ['sage/rings/integer_ring.pyx'],
1524
              libraries=['ntl', 'gmp']),
1525

1526
    Extension('sage.rings.factorint',
1527
              sources = ['sage/rings/factorint.pyx'],
1528
              libraries=['gmp']),
1529

1530
    Extension('sage.rings.fast_arith',
1531
              sources = ['sage/rings/fast_arith.pyx'],
1532
              libraries=['pari','gmp','csage']),
1533

1534
    Extension('sage.rings.fraction_field_element',
1535
              sources = ['sage/rings/fraction_field_element.pyx']),
1536

1537
    Extension('sage.rings.fraction_field_FpT',
1538
              sources = ['sage/rings/fraction_field_FpT.pyx'],
1539
              libraries = ["csage", "flint", "gmp", "gmpxx", "ntl", "zn_poly"],
1540
              language = 'c++',
1541
              depends = flint_depends),
1542

1543
    Extension('sage.rings.laurent_series_ring_element',
1544
              sources = ['sage/rings/laurent_series_ring_element.pyx']),
1545

1546
    Extension('sage.rings.morphism',
1547
              sources = ['sage/rings/morphism.pyx']),
1548

1549
    Extension('sage.rings.complex_mpc',
1550
              sources = ['sage/rings/complex_mpc.pyx'],
1551
              libraries = ['mpc', 'mpfr', 'gmp']),
1552

1553
    Extension('sage.rings.noncommutative_ideals',
1554
              sources = ['sage/rings/noncommutative_ideals.pyx']),
1555

1556
    Extension('sage.rings.power_series_mpoly',
1557
              sources = ['sage/rings/power_series_mpoly.pyx']),
1558

1559
    Extension('sage.rings.power_series_poly',
1560
              sources = ['sage/rings/power_series_poly.pyx']),
1561

1562
    Extension('sage.rings.power_series_ring_element',
1563
              sources = ['sage/rings/power_series_ring_element.pyx']),
1564

1565
    Extension('sage.rings.rational',
1566
              sources = ['sage/rings/rational.pyx'],
1567
              libraries=['ntl', 'gmp'],
1568
              depends = numpy_depends),
1569

1570
    Extension('sage.rings.real_double',
1571
              sources = ['sage/rings/real_double.pyx'],
1572
              libraries = ['gsl', 'gmp', BLAS, BLAS2],
1573
              depends = numpy_depends,
1574
              define_macros=[('GSL_DISABLE_DEPRECATED','1')]),
1575

1576
    Extension('sage.rings.real_interval_absolute',
1577
              sources = ['sage/rings/real_interval_absolute.pyx'],
1578
              libraries = ['gmp']),
1579

1580
    Extension('sage.rings.real_lazy',
1581
              sources = ['sage/rings/real_lazy.pyx']),
1582

1583
    Extension('sage.rings.real_mpfi',
1584
              sources = ['sage/rings/real_mpfi.pyx'],
1585
              libraries = ['mpfi', 'mpfr', 'gmp']),
1586

1587
    Extension('sage.rings.real_mpfr',
1588
              sources = ['sage/rings/real_mpfr.pyx'],
1589
              libraries = ['mpfr', 'pari', 'gmp'],
1590
              depends = numpy_depends),
1591

1592
    Extension('sage.rings.residue_field',
1593
              sources = ['sage/rings/residue_field.pyx']),
1594

1595
    Extension('sage.rings.ring',
1596
              sources = ['sage/rings/ring.pyx']),
1597

1598
    Extension('sage.rings.universal_cyclotomic_field.universal_cyclotomic_field_c',
1599
              sources = ['sage/rings/universal_cyclotomic_field/universal_cyclotomic_field_c.pyx'],
1600
              include_dirs = numpy_include_dirs,
1601
              libraries = ['gmp'],
1602
              depends = numpy_depends),
1603

1604
        ################################
1605
        ##
1606
        ## sage.rings.finite_rings
1607
        ##
1608
        ################################
1609

1610
    Extension('sage.rings.finite_rings.finite_field_base',
1611
              sources = ['sage/rings/finite_rings/finite_field_base.pyx']),
1612

1613
    Extension('sage.rings.finite_rings.element_base',
1614
              sources = ['sage/rings/finite_rings/element_base.pyx']),
1615

1616
    Extension('sage.rings.finite_rings.integer_mod',
1617
              sources = ['sage/rings/finite_rings/integer_mod.pyx'],
1618
              libraries = ['gmp']),
1619

1620
    Extension('sage.rings.finite_rings.element_givaro',
1621
              sources = ["sage/rings/finite_rings/element_givaro.pyx"],
1622
              # this order is needed to compile under windows.
1623
              libraries = ['givaro', 'ntl', 'gmpxx', 'gmp', 'm', 'stdc++', ],
1624
              language='c++',
1625
              extra_compile_args = givaro_extra_compile_args),
1626

1627
    Extension('sage.rings.finite_rings.element_ntl_gf2e',
1628
              sources = ['sage/rings/finite_rings/element_ntl_gf2e.pyx'],
1629
              libraries = ['ntl', 'gmp'],
1630
              language = 'c++'),
1631

1632
    Extension('sage.rings.finite_rings.element_pari_ffelt',
1633
              sources = ['sage/rings/finite_rings/element_pari_ffelt.pyx'],
1634
              libraries = ['pari', 'gmp']),
1635

1636
    Extension('sage.rings.finite_rings.hom_finite_field',
1637
              sources = ["sage/rings/finite_rings/hom_finite_field.pyx"]),
1638

1639
    Extension('sage.rings.finite_rings.hom_prime_finite_field',
1640
              sources = ["sage/rings/finite_rings/hom_prime_finite_field.pyx"]),
1641

1642
    Extension('sage.rings.finite_rings.hom_finite_field_givaro',
1643
              sources = ["sage/rings/finite_rings/hom_finite_field_givaro.pyx"],
1644
              # this order is needed to compile under windows.
1645
              libraries = ['givaro', 'ntl', 'gmpxx', 'gmp', 'm', 'stdc++', ],
1646
              language='c++',
1647
              extra_compile_args = givaro_extra_compile_args),
1648

1649
        ################################
1650
        ##
1651
        ## sage.rings.function_field
1652
        ##
1653
        ################################
1654

1655
    Extension('sage.rings.function_field.function_field_element',
1656
              sources = ['sage/rings/function_field/function_field_element.pyx']),
1657

1658
        ################################
1659
        ##
1660
        ## sage.rings.number_field
1661
        ##
1662
        ################################
1663

1664
    Extension('sage.rings.number_field.number_field_base',
1665
              sources = ['sage/rings/number_field/number_field_base.pyx']),
1666

1667
    Extension('sage.rings.number_field.number_field_element',
1668
              sources = ['sage/rings/number_field/number_field_element.pyx'],
1669
              libraries=['ntl','gmp'],
1670
              language = 'c++'),
1671

1672
    Extension('sage.rings.number_field.number_field_element_quadratic',
1673
              sources = ['sage/rings/number_field/number_field_element_quadratic.pyx'],
1674
              libraries=['ntl', 'gmp'],
1675
              language = 'c++'),
1676

1677
    Extension('sage.rings.number_field.number_field_morphisms',
1678
              sources = ['sage/rings/number_field/number_field_morphisms.pyx']),
1679

1680
    Extension('sage.rings.number_field.totallyreal',
1681
              sources = ['sage/rings/number_field/totallyreal.pyx'],
1682
              libraries = ['pari', 'gmp']),
1683

1684
    Extension('sage.rings.number_field.totallyreal_data',
1685
              sources = ['sage/rings/number_field/totallyreal_data.pyx'],
1686
              libraries = ['gmp'],
1687
              depends = numpy_depends),
1688

1689
        ################################
1690
        ##
1691
        ## sage.rings.padics
1692
        ##
1693
        ################################
1694

1695
    Extension('sage.rings.padics.morphism',
1696
              sources = ['sage/rings/padics/morphism.pyx']),
1697

1698
    Extension('sage.rings.padics.common_conversion',
1699
              sources = ['sage/rings/padics/common_conversion.pyx'],
1700
              libraries=['gmp']),
1701

1702
    Extension('sage.rings.padics.local_generic_element',
1703
              sources = ['sage/rings/padics/local_generic_element.pyx']),
1704

1705
    Extension('sage.rings.padics.padic_capped_absolute_element',
1706
              sources = ['sage/rings/padics/padic_capped_absolute_element.pyx'],
1707
              libraries=['gmp']),
1708

1709
    Extension('sage.rings.padics.padic_capped_relative_element',
1710
              sources = ['sage/rings/padics/padic_capped_relative_element.pyx'],
1711
              libraries=['gmp', 'csage']),
1712

1713
    Extension('sage.rings.padics.padic_ext_element',
1714
              sources = ['sage/rings/padics/padic_ext_element.pyx'],
1715
              libraries=['ntl', 'gmp', 'csage', 'gmpxx', 'm', 'stdc++'],
1716
              language='c++'),
1717

1718
    Extension('sage.rings.padics.padic_fixed_mod_element',
1719
              sources = ['sage/rings/padics/padic_fixed_mod_element.pyx'],
1720
              libraries=['gmp']),
1721

1722
    Extension('sage.rings.padics.padic_generic_element',
1723
              sources = ['sage/rings/padics/padic_generic_element.pyx'],
1724
              libraries=['gmp']),
1725

1726
    Extension('sage.rings.padics.padic_printing',
1727
              sources = ['sage/rings/padics/padic_printing.pyx'],
1728
              libraries=['gmp', 'ntl', 'csage', 'gmpxx', 'm', 'stdc++'],
1729
              language='c++'),
1730

1731
    Extension('sage.rings.padics.padic_ZZ_pX_CA_element',
1732
              sources = ['sage/rings/padics/padic_ZZ_pX_CA_element.pyx'],
1733
              libraries = ['ntl', 'gmp', 'csage','gmpxx','m','stdc++'],
1734
              language='c++'),
1735

1736
    Extension('sage.rings.padics.padic_ZZ_pX_CR_element',
1737
              sources = ['sage/rings/padics/padic_ZZ_pX_CR_element.pyx'],
1738
              libraries=['ntl', 'gmp', 'csage','gmpxx','m','stdc++'],
1739
              language='c++'),
1740

1741
    Extension('sage.rings.padics.padic_ZZ_pX_element',
1742
              sources = ['sage/rings/padics/padic_ZZ_pX_element.pyx'],
1743
              libraries=['ntl', 'gmp', 'csage', 'gmpxx', 'm', 'stdc++'],
1744
              language='c++'),
1745

1746
    Extension('sage.rings.padics.padic_ZZ_pX_FM_element',
1747
              sources = ['sage/rings/padics/padic_ZZ_pX_FM_element.pyx'],
1748
              libraries=['ntl', 'gmp', 'csage', 'gmpxx', 'm', 'stdc++'],
1749
              language='c++'),
1750

1751
    Extension('sage.rings.padics.pow_computer',
1752
              sources = ['sage/rings/padics/pow_computer.pyx'],
1753
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
1754
              language='c++'),
1755

1756
    Extension('sage.rings.padics.pow_computer_ext',
1757
              sources = ['sage/rings/padics/pow_computer_ext.pyx'],
1758
              libraries = ["csage", "ntl", "gmp", "gmpxx", "m", "stdc++"],
1759
              language='c++'),
1760

1761
        ################################
1762
        ##
1763
        ## sage.rings.polynomial
1764
        ##
1765
        ################################
1766

1767
    Extension('sage.rings.polynomial.cyclotomic',
1768
              sources = ['sage/rings/polynomial/cyclotomic.pyx']),
1769

1770
    Extension('sage.rings.polynomial.laurent_polynomial',
1771
              sources = ['sage/rings/polynomial/laurent_polynomial.pyx']),
1772

1773
    Extension('sage.rings.polynomial.multi_polynomial',
1774
              sources = ['sage/rings/polynomial/multi_polynomial.pyx']),
1775

1776
    Extension('sage.rings.polynomial.multi_polynomial_ideal_libsingular',
1777
              sources = ['sage/rings/polynomial/multi_polynomial_ideal_libsingular.pyx'],
1778
              libraries = singular_libs,
1779
              language="c++",
1780
              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
1781
              depends = singular_depends,
1782
              extra_compile_args = givaro_extra_compile_args),
1783

1784
    Extension('sage.rings.polynomial.plural',
1785
              sources = ['sage/rings/polynomial/plural.pyx'],
1786
              libraries = ['m', 'readline', 'singular', 'givaro', 'gmpxx', 'gmp'],
1787
              language="c++",
1788
              include_dirs = [SAGE_INC +'/singular'],
1789
              depends = [SAGE_INC + "/libsingular.h"],
1790
              extra_compile_args = givaro_extra_compile_args),
1791

1792
    Extension('sage.rings.polynomial.multi_polynomial_libsingular',
1793
              sources = ['sage/rings/polynomial/multi_polynomial_libsingular.pyx'],
1794
              libraries = singular_libs,
1795
              language="c++",
1796
              include_dirs = [SAGE_INC + '/singular', SAGE_INC + '/factory'],
1797
              depends = singular_depends,
1798
              extra_compile_args = givaro_extra_compile_args),
1799

1800
    Extension('sage.rings.polynomial.multi_polynomial_ring_generic',
1801
              sources = ['sage/rings/polynomial/multi_polynomial_ring_generic.pyx']),
1802

1803
    Extension('sage.rings.polynomial.polydict',
1804
              sources = ['sage/rings/polynomial/polydict.pyx']),
1805

1806
    Extension('sage.rings.polynomial.polynomial_compiled',
1807
               sources = ['sage/rings/polynomial/polynomial_compiled.pyx']),
1808

1809
    Extension('sage.rings.polynomial.polynomial_element',
1810
              sources = ['sage/rings/polynomial/polynomial_element.pyx'],
1811
              depends = numpy_depends),
1812

1813
    Extension('sage.rings.polynomial.polynomial_gf2x',
1814
              sources = ['sage/rings/polynomial/polynomial_gf2x.pyx'],
1815
              libraries = ['ntl', 'stdc++', 'gmp'],
1816
              extra_compile_args = m4ri_extra_compile_args,
1817
              language = 'c++',
1818
              depends = [SAGE_INC + '/m4ri/m4ri.h'],
1819
              include_dirs = ['sage/libs/ntl/']),
1820

1821
    Extension('sage.rings.polynomial.polynomial_zz_pex',
1822
              sources = ['sage/rings/polynomial/polynomial_zz_pex.pyx'],
1823
              libraries = ['ntl', 'stdc++', 'gmp'],
1824
              language = 'c++',
1825
              include_dirs = ['sage/libs/ntl/']),
1826

1827
    Extension('sage.rings.polynomial.polynomial_zmod_flint',
1828
              sources = ['sage/rings/polynomial/polynomial_zmod_flint.pyx'],
1829
              libraries = ["csage", "flint", "gmp", "gmpxx", "ntl", "zn_poly"],
1830
              language = 'c++',
1831
              depends = flint_depends),
1832

1833
    Extension('sage.rings.polynomial.polynomial_integer_dense_flint',
1834
              sources = ['sage/rings/polynomial/polynomial_integer_dense_flint.pyx'],
1835
              language = 'c++',
1836
              libraries = ["csage", "flint", "ntl", "gmpxx", "gmp"],
1837
              depends = flint_depends),
1838

1839
    Extension('sage.rings.polynomial.polynomial_integer_dense_ntl',
1840
              sources = ['sage/rings/polynomial/polynomial_integer_dense_ntl.pyx'],
1841
              libraries = ['ntl', 'stdc++', 'gmp'],
1842
              language = 'c++',
1843
              include_dirs = ['sage/libs/ntl/']),
1844

1845
    Extension('sage.rings.polynomial.polynomial_rational_flint',
1846
              sources = ['sage/rings/polynomial/polynomial_rational_flint.pyx'],
1847
              libraries = ["csage", "flint", "ntl", "gmpxx", "gmp"],
1848
              language = 'c++',
1849
              depends = flint_depends),
1850

1851
    Extension('sage.rings.polynomial.polynomial_modn_dense_ntl',
1852
              sources = ['sage/rings/polynomial/polynomial_modn_dense_ntl.pyx'],
1853
              libraries = ['ntl', 'stdc++', 'gmp'],
1854
              language = 'c++',
1855
              include_dirs = ['sage/libs/ntl/']),
1856

1857
    Extension('sage.rings.polynomial.pbori',
1858
              sources = ['sage/rings/polynomial/pbori.pyx'],
1859
              libraries=['polybori-' + polybori_major_version,
1860
                         'polybori_groebner-' + polybori_major_version, 'm4ri', 'png12'],
1861
              include_dirs = [SAGE_INC, "sage/libs/polybori"],
1862
              depends = [SAGE_INC + "/polybori/" + hd + ".h" for hd in ["polybori", "config"] ] + \
1863
                        [SAGE_INC + '/m4ri/m4ri.h'],
1864
              extra_compile_args = polybori_extra_compile_args + m4ri_extra_compile_args,
1865
              language = 'c++'),
1866

1867
    Extension('sage.rings.polynomial.polynomial_real_mpfr_dense',
1868
              sources = ['sage/rings/polynomial/polynomial_real_mpfr_dense.pyx'],
1869
              libraries = ['mpfr', 'gmp']),
1870

1871
    Extension('sage.rings.polynomial.real_roots',
1872
              sources = ['sage/rings/polynomial/real_roots.pyx'],
1873
              libraries=['mpfr', 'gmp'],
1874
              include_dirs = numpy_include_dirs,
1875
              depends = numpy_depends),
1876

1877
    Extension('sage.rings.polynomial.symmetric_reduction',
1878
              sources = ['sage/rings/polynomial/symmetric_reduction.pyx']),
1879

1880
        ################################
1881
        ##
1882
        ## sage.rings.semirings
1883
        ##
1884
        ################################
1885

1886
    Extension('sage.rings.semirings.tropical_semiring',
1887
              sources = ['sage/rings/semirings/tropical_semiring.pyx']),
1888

1889
    ################################
1890
    ##
1891
    ## sage.schemes
1892
    ##
1893
    ################################
1894

1895
    Extension('sage.schemes.elliptic_curves.descent_two_isogeny',
1896
              sources = ['sage/schemes/elliptic_curves/descent_two_isogeny.pyx'],
1897
              extra_compile_args=["-std=c99"],
1898
              depends = [SAGE_INC + '/ratpoints.h',
1899
                         SAGE_INC + '/gmp.h'] +
1900
                         flint_depends,
1901
              libraries = ['flint', 'gmp', 'ratpoints']),
1902

1903
    Extension('sage.schemes.hyperelliptic_curves.hypellfrob',
1904
              sources = ['sage/schemes/hyperelliptic_curves/hypellfrob.pyx',
1905
                         'sage/schemes/hyperelliptic_curves/hypellfrob/hypellfrob.cpp',
1906
                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_ntl.cpp',
1907
                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_zn_poly.cpp'],
1908
              libraries = ['ntl', 'stdc++', 'gmp', 'zn_poly'],
1909
              depends = ['sage/schemes/hyperelliptic_curves/hypellfrob/hypellfrob.h',
1910
                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_ntl.h',
1911
                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_zn_poly.h'],
1912
              language = 'c++',
1913
              include_dirs = ['sage/libs/ntl/',
1914
                              'sage/schemes/hyperelliptic_curves/hypellfrob/']),
1915

1916
    Extension('sage.schemes.toric.divisor_class',
1917
              sources = ['sage/schemes/toric/divisor_class.pyx'],
1918
              libraries = ['gmp']),
1919

1920
    ################################
1921
    ##
1922
    ## sage.sets
1923
    ##
1924
    ################################
1925

1926
    Extension('sage.sets.disjoint_set',
1927
              sources = ['sage/sets/disjoint_set.pyx'],
1928
              libraries = ['gmp', 'flint'],
1929
              extra_compile_args = ['-std=c99'],
1930
              depends = flint_depends),
1931

1932
    ################################
1933
    ##
1934
    ## sage.stats
1935
    ##
1936
    ################################
1937

1938
    Extension('sage.stats.hmm.util',
1939
              sources = ['sage/stats/hmm/util.pyx']),
1940

1941
    Extension('sage.stats.hmm.distributions',
1942
              sources = ['sage/stats/hmm/distributions.pyx']),
1943

1944
    Extension('sage.stats.hmm.hmm',
1945
              sources = ['sage/stats/hmm/hmm.pyx']),
1946

1947
    Extension('sage.stats.hmm.chmm',
1948
              sources = ['sage/stats/hmm/chmm.pyx'],
1949
              extra_compile_args=["-std=c99"]),
1950

1951
    Extension('sage.stats.intlist',
1952
              sources = ['sage/stats/intlist.pyx']),
1953

1954
    ################################
1955
    ##
1956
    ## sage.structure
1957
    ##
1958
    ################################
1959

1960
    Extension('sage.structure.category_object',
1961
              sources = ['sage/structure/category_object.pyx']),
1962

1963
    Extension('sage.structure.coerce',
1964
              sources = ['sage/structure/coerce.pyx']),
1965

1966
    Extension('sage.structure.coerce_actions',
1967
              sources = ['sage/structure/coerce_actions.pyx']),
1968

1969
    Extension('sage.structure.coerce_dict',
1970
              sources = ['sage/structure/coerce_dict.pyx']),
1971

1972
    Extension('sage.structure.coerce_maps',
1973
              sources = ['sage/structure/coerce_maps.pyx']),
1974

1975
    Extension('sage.structure.debug_options',
1976
              sources=['sage/structure/debug_options.pyx']),
1977

1978
    # Compile this with -Os because it works around a bug with
1979
    # GCC-4.7.3 + Cython 0.19 on Itanium, see Trac #14452. Moreover, it
1980
    # actually results in faster code than -O3.
1981
    Extension('sage.structure.element',
1982
              sources = ['sage/structure/element.pyx'],
1983
              extra_compile_args=["-Os"]),
1984

1985
    Extension('sage.structure.element_wrapper',
1986
              sources = ['sage/structure/element_wrapper.pyx']),
1987

1988
    Extension('sage.structure.factory',
1989
              sources = ['sage/structure/factory.pyx']),
1990

1991
    Extension('sage.structure.generators',
1992
              sources = ['sage/structure/generators.pyx']),
1993

1994
    Extension('sage.structure.mutability',
1995
              sources = ['sage/structure/mutability.pyx']),
1996

1997
    Extension('sage.structure.misc',
1998
              sources = ['sage/structure/misc.pyx']),
1999

2000
    Extension('sage.structure.parent',
2001
              sources = ['sage/structure/parent.pyx']),
2002

2003
    Extension('sage.structure.parent_base',
2004
              sources = ['sage/structure/parent_base.pyx']),
2005

2006
    Extension('sage.structure.parent_gens',
2007
              sources = ['sage/structure/parent_gens.pyx']),
2008

2009
    Extension('sage.structure.parent_old',
2010
              sources = ['sage/structure/parent_old.pyx']),
2011

2012
    Extension('sage.structure.sage_object',
2013
              sources = ['sage/structure/sage_object.pyx']),
2014

2015
    Extension('sage.structure.wrapper_parent',
2016
              sources = ['sage/structure/wrapper_parent.pyx']),
2017

2018
    ################################
2019
    ##
2020
    ## sage.symbolic
2021
    ##
2022
    ################################
2023

2024
    # TODO: Verify numpy depends are also found automatically.
2025

2026
    Extension('sage.symbolic.function',
2027
              sources = ['sage/symbolic/function.pyx'],
2028
              depends = numpy_depends),
2029

2030
    Extension('sage.symbolic.ring',
2031
              sources = ['sage/symbolic/ring.pyx'],
2032
              depends = numpy_depends),
2033

2034
    Extension('*', ['sage/symbolic/*.pyx']),
2035

2036
    ################################
2037
    ##
2038
    ## sage.tests
2039
    ##
2040
    ################################
2041
    Extension('sage.tests.interrupt',
2042
              sources = ['sage/tests/interrupt.pyx', 'sage/tests/c_lib.c']),
2043

2044
    Extension('sage.tests.parallel',
2045
              sources = ['sage/tests/parallel.pyx'],
2046
              extra_compile_args=["-fopenmp"],
2047
              extra_link_args=["-fopenmp"]),
2048

2049
    Extension('sage.tests.stl_vector',
2050
              sources = ['sage/tests/stl_vector.pyx'],
2051
              libraries = ['gmp'],
2052
              language = 'c++'),
2053

2054
    Extension('sage.tests.cython',
2055
              sources = ['sage/tests/cython.pyx']),
2056

2057
    ################################
2058
    ##
2059
    ## sage.sat
2060
    ##
2061
    ################################
2062

2063
    Extension('sage.sat.solvers.satsolver',
2064
              sources = ['sage/sat/solvers/satsolver.pyx']),
2065
    ]
2066

2067
# Optional extensions :
2068
# These extensions are to be compiled only if the
2069
# corresponding packages have been installed
2070

2071
from sage.misc.package import is_package_installed
2072

2073
if is_package_installed('fes'):
2074
    ext_modules.extend([
2075
       Extension("sage.libs.fes",
2076
                 ["sage/libs/fes.pyx"],
2077
                 include_dirs = [SAGE_INC, "sage/c_lib/include/"],
2078
                 language = "c",
2079
                 libraries = ['csage', 'fes'])
2080
       ])
2081

2082

2083
if (os.path.isfile(SAGE_INC + "/gurobi_c.h") and
2084
    os.path.isfile(SAGE_LOCAL + "/lib/libgurobi.so")):
2085
    ext_modules.append(
2086
        Extension("sage.numerical.backends.gurobi_backend",
2087
                  ["sage/numerical/backends/gurobi_backend.pyx"],
2088
                  include_dirs = [SAGE_INC, "sage/c_lib/include/"],
2089
                  language = 'c',
2090
                  libraries = ["csage", "stdc++", "gurobi"])
2091
        )
2092

2093

2094
if is_package_installed('coxeter3'):
2095
    ext_modules.append(
2096
        Extension('sage.libs.coxeter3.coxeter',
2097
                  sources = ['sage/libs/coxeter3/coxeter.pyx'],
2098
                  include_dirs = [os.path.join(SAGE_INC, 'coxeter')],
2099
                  language="c++",
2100
                  libraries = ['csage', 'coxeter3', 'stdc++'])
2101
        )
2102

2103

2104
if (os.path.isfile(SAGE_INC + "/cplex.h") and
2105
    os.path.isfile(SAGE_LOCAL + "/lib/libcplex.a")):
2106
    ext_modules.append(
2107
        Extension("sage.numerical.backends.cplex_backend",
2108
                  ["sage/numerical/backends/cplex_backend.pyx"],
2109
                  include_dirs = [SAGE_INC, "sage/c_lib/include/"],
2110
                  language = 'c',
2111
                  libraries = ["csage", "stdc++", "cplex"])
2112
        )
2113

2114
if is_package_installed('cbc'):
2115
    ext_modules.append(
2116
        Extension("sage.numerical.backends.coin_backend",
2117
                  ["sage/numerical/backends/coin_backend.pyx"],
2118
                  include_dirs = [SAGE_INC, "sage/c_lib/include/"],
2119
                  language = 'c++',
2120
                  libraries = ["csage", "stdc++", "Cbc", "CbcSolver", "Cgl", "Clp", "CoinUtils", "OsiCbc", "OsiClp", "Osi", "lapack"])
2121
        )
2122

2123

2124
if is_package_installed('cryptominisat'):
2125
    ext_modules.extend([
2126
        Extension("sage.sat.solvers.cryptominisat.cryptominisat",
2127
                  ["sage/sat/solvers/cryptominisat/cryptominisat.pyx"],
2128
                  include_dirs = [SAGE_INC, SAGE_INC+"/cmsat"],
2129
                  language = "c++",
2130
                  libraries = ['cryptominisat', 'z']),
2131
        Extension("sage.sat.solvers.cryptominisat.solverconf",
2132
                  ["sage/sat/solvers/cryptominisat/solverconf.pyx", "sage/sat/solvers/cryptominisat/solverconf_helper.cpp"],
2133
                  include_dirs = [SAGE_INC, SAGE_INC+"/cmsat"],
2134
                  language = "c++",
2135
                  libraries = ['cryptominisat', 'z'])
2136
        ])
2137

2138
# Only include darwin_utilities on OS_X >= 10.5
2139
UNAME = os.uname()
2140
if UNAME[0] == "Darwin" and not UNAME[2].startswith('8.'):
2141
    ext_modules.append(
2142
        Extension('sage.misc.darwin_utilities',
2143
            sources = ['sage/misc/darwin_memory_usage.c',
2144
                       'sage/misc/darwin_utilities.pyx'],
2145
            depends = ['sage/misc/darwin_memory_usage.h'])
2146
        )
2147

2148

2149
if is_package_installed('lrcalc'):
2150
    ext_modules.append(
2151
        Extension('sage.libs.lrcalc.lrcalc',
2152
                  sources = ["sage/libs/lrcalc/lrcalc.pyx"],
2153
                  include_dirs = [SAGE_INC + '/lrcalc/'],
2154
                  libraries = ["lrcalc"],
2155
                  depends = [SAGE_INC + "/lrcalc/symfcn.h"]), # should include all .h
2156
        )
2157

2158
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