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GAP 4.8.9 installation with standard packages -- copy to your CoCalc project to get it
Project: cocalc-sagemath-dev-slelievre
Views: 418346gap> START_TEST("HAP library"); gap> K:=ReadPDBfileAsPurePermutahedralComplex(Concatenation(dir,"data1V2X.pdb")); Reading chain containing 191 atoms. Pure permutahedral complex of dimension 3. gap> Display(ZigZagContractedComplex(K)); gap> #See Figure 1.24 (right) gap> C:=PureComplexComplement(K); Pure permutahedral complex of dimension 3. gap> Size(C); 418922 gap> D:=ZigZagContractedComplex(C); Pure permutahedral complex of dimension 3. gap> Size(D); 3438 gap> Y:=RegularCWComplex(D); Regular CW-complex of dimension 3 gap> W:=SimplifiedComplex(Y); Regular CW-complex of dimension 3 gap> W!.nrCells(3); 22 gap> W:=ContractedComplex(Y); Regular CW-complex of dimension 2 gap> Size(W); 69731 gap> CriticalCells(W); [ [ 2, 1 ], [ 2, 179 ], [ 1, 13092 ], [ 1, 14050 ], [ 0, 16453 ] ] gap> STOP_TEST( "tst.tst", 1000 );