save_psf_in_mpi_parallel.pbs

#!/bin/bash
#PBS -P y03
#PBS -q normal
#PBS -l walltime=02:30:00
#PBS -l wd
#PBS -o o
#PBS -j oe

module load sage/8.0
module load openmpi/3.0.0
export PYTHONPATH=${BCG_SITE_DIR}:${PYTHONPATH}
set -o errexit
cd "${PBS_O_WORKDIR}/../sage-code"
date
mpirun -np $QSUB_NCPUS --mca mpi_warn_on_fork 0 \
  sage -python save_psf_in_mpi_parallel.py $QSUB_SEQ_NBR $QSUB_FNBR_BEG $QSUB_C_LEN $BCG_PARTS_DIR
cd $PBS_O_WORKDIR

./save_many_psf_from_parts.sh $QSUB_SEQ_NBR $QSUB_FNBR_BEG $QSUB_NBRF