Published/scientific-latex-templates/bioinformatics-genomics / pythontex-files-main / py_default_default_6.stdout
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Gene family presence/absence matrix:
CoreMetabolism DNArepair CellWall Transport ... StressResponse SecretionSystems Chemotaxis FlagellarBiosynthesis
EcoliK12 1 1 1 1 ... 1 0 1 0
EcoliO157H7 1 1 1 1 ... 1 1 1 1
EcoliCFT073 1 1 1 1 ... 1 0 0 0
EcoliUTI89 1 1 1 1 ... 1 1 1 1
EcoliEDL933 1 1 1 0 ... 1 1 1 1
EcoliMG1655 1 1 1 1 ... 1 0 0 1
EcoliDH10B 1 1 1 0 ... 0 1 1 1
EcoliBL21 1 1 1 1 ... 0 1 0 1
Gene family conservation scores:
CoreMetabolism: 1.00
DNArepair: 1.00
CellWall: 1.00
Transport: 0.75
Regulation: 0.62
Pathogenicity: 0.88
AntibioticResistance: 1.00
MobileElements: 0.38
StressResponse: 0.75
SecretionSystems: 0.62
Chemotaxis: 0.62
FlagellarBiosynthesis: 0.75
Strain gene family diversity:
EcoliK12: 9 gene families
EcoliO157H7: 12 gene families
EcoliCFT073: 9 gene families
EcoliUTI89: 11 gene families
EcoliEDL933: 8 gene families
EcoliMG1655: 9 gene families
EcoliDH10B: 9 gene families
EcoliBL21: 8 gene families