Path: blob/main/biology/augustus/files/patch-Makefile
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- workaround for The 'install' target doesn't work when stage directory is necessary, see https://github.com/Gaius-Augustus/Augustus/issues/366 --- Makefile.orig 2022-09-23 17:06:14 UTC +++ Makefile @@ -30,16 +30,16 @@ PREFIX = /usr/local INSTALLDIR = /opt/augustus-$(AUGVERSION) install: - if [ ! $(PWD) -ef $(INSTALLDIR) ] ; then \ - install -d $(INSTALLDIR) && \ - cp -a config bin scripts $(INSTALLDIR) ; \ + if [ ! $(PWD) -ef $(DESTDIR)$(INSTALLDIR) ] ; then \ + install -d $(DESTDIR)$(INSTALLDIR) && \ + cp -a config bin scripts $(DESTDIR)$(INSTALLDIR) ; \ fi - ln -sf $(INSTALLDIR)/bin/augustus $(PREFIX)/bin/augustus - ln -sf $(INSTALLDIR)/bin/etraining $(PREFIX)/bin/etraining - ln -sf $(INSTALLDIR)/bin/prepareAlign $(PREFIX)/bin/prepareAlign - ln -sf $(INSTALLDIR)/bin/fastBlockSearch $(PREFIX)/bin/fastBlockSearch - if [ -f $(INSTALLDIR)/bin/load2db ] ; then ln -sf $(INSTALLDIR)/bin/load2db $(PREFIX)/bin/load2db ; fi - if [ -f $(INSTALLDIR)/bin/getSeq ] ; then ln -sf $(INSTALLDIR)/bin/getSeq $(PREFIX)/bin/getSeq ; fi + $(RLN) $(DESTDIR)$(INSTALLDIR)/bin/augustus $(DESTDIR)$(PREFIX)/bin/augustus + $(RLN) $(DESTDIR)$(INSTALLDIR)/bin/etraining $(DESTDIR)$(PREFIX)/bin/etraining + $(RLN) $(DESTDIR)$(INSTALLDIR)/bin/prepareAlign $(DESTDIR)$(PREFIX)/bin/prepareAlign + $(RLN) $(DESTDIR)$(INSTALLDIR)/bin/fastBlockSearch $(DESTDIR)$(PREFIX)/bin/fastBlockSearch + if [ -f $(DESTDIR)$(INSTALLDIR)/bin/load2db ] ; then $(RLN) $(DESTDIR)$(INSTALLDIR)/bin/load2db $(DESTDIR)$(PREFIX)/bin/load2db ; fi + if [ -f $(DESTDIR)$(INSTALLDIR)/bin/getSeq ] ; then $(RLN) $(DESTDIR)$(INSTALLDIR)/bin/getSeq $(DESTDIR)$(PREFIX)/bin/getSeq ; fi # for internal purposes: release: