Path: blob/main/biology/bedtools/files/patch-Makefile
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--- Makefile.orig 2021-01-23 19:33:26 UTC +++ Makefile @@ -4,7 +4,8 @@ # (c) 2009 Aaron Quinlan # ========================== -SHELL := /bin/bash -e +# Use sh for portability and avoid bash extensions in shell commands +SHELL := /bin/sh -e VERSION_FILE=./src/utils/version/version_git.h RELEASED_VERSION_FILE=./src/utils/version/version_release.txt @@ -21,7 +22,8 @@ OBJ_DIR = obj BIN_DIR = bin SRC_DIR = src -CXX = g++ +# Default if not provided via the environment or make args +CXX ?= g++ ifeq ($(DEBUG),1) BT_CPPFLAGS = -DDEBUG -D_DEBUG -D_FILE_OFFSET_BITS=64 -DWITH_HTS_CB_API $(INCLUDES) @@ -41,7 +43,8 @@ endif BT_LDFLAGS = BT_LIBS = -lz -lm -lbz2 -llzma -lpthread -prefix ?= /usr/local +# Default if not provided via the environment or make args +PREFIX ?= /usr/local SUBDIRS = $(SRC_DIR)/annotateBed \ $(SRC_DIR)/bamToBed \ @@ -197,9 +200,9 @@ $(BIN_DIR)/intersectBed: | $(BIN_DIR) .PHONY: all install: all - mkdir -p $(DESTDIR)$(prefix)/bin + mkdir -p $(DESTDIR)$(PREFIX)/bin for file in bin/* ; do \ - cp -f $$file $(DESTDIR)$(prefix)/bin; \ + cp -f $$file $(DESTDIR)$(PREFIX)/bin; \ done print_banner: