Path: blob/main/biology/bowtie/files/patch-Makefile
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--- Makefile.orig 2021-12-13 20:33:26 UTC
+++ Makefile
@@ -146,7 +146,7 @@ ifeq (32,$(BITS))
endif
DEBUG_FLAGS = -O0 -g3
-RELEASE_FLAGS = -O3
+RELEASE_FLAGS =
NOASSERT_FLAGS = -DNDEBUG
FILE_FLAGS = -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE
@@ -225,7 +225,7 @@ DEFS=-fno-strict-aliasing \
$(MM_DEF) \
$(SHMEM_DEF)
-ALL_FLAGS = $(EXTRA_FLAGS) $(CFLAGS) $(CXXFLAGS)
+ALL_FLAGS = $(EXTRA_FLAGS) $(CXXFLAGS)
DEBUG_DEFS = -DCOMPILER_OPTIONS="\"$(DEBUG_FLAGS) $(EXTRA_FLAGS) $(CFLAGS) $(CXXFLAGS)\""
RELEASE_DEFS = -DCOMPILER_OPTIONS="\"$(RELEASE_FLAGS) $(EXTRA_FLAGS) $(CFLAGS) $(CXXFLAGS)\""