PORTNAME= coverm DISTVERSIONPREFIX= v DISTVERSION= 0.7.0 PORTREVISION= 7 CATEGORIES= biology MAINTAINER= [email protected] COMMENT= Read coverage calculator for metagenomics WWW= https://github.com/wwood/CoverM LICENSE= AGPLv3 LICENSE_FILE= ${WRKSRC}/LICENCE.txt BROKEN_aarch64= compilation fails, see https://github.com/wwood/CoverM/issues/234 BROKEN_i386= compilation fails, see https://github.com/wwood/CoverM/issues/227 USES= cargo USE_GITHUB= yes GH_ACCOUNT= wwood GH_PROJECT= CoverM CARGO_CRATES= addr2line-0.24.2 \ adler2-2.0.0 \ aho-corasick-1.1.3 \ ansi_term-0.12.1 \ anstream-0.6.15 \ anstyle-1.0.8 \ anstyle-parse-0.2.5 \ anstyle-query-1.1.1 \ anstyle-wincon-3.0.4 \ anyhow-1.0.89 \ approx-0.5.1 \ assert_cli-0.6.3 \ atty-0.2.14 \ autocfg-1.4.0 \ backtrace-0.3.74 \ bincode-1.3.3 \ bio-1.6.0 \ bio-types-1.0.4 \ bird_tool_utils-0.5.1 \ bird_tool_utils-man-0.4.0 \ bit-set-0.5.3 \ bit-vec-0.5.1 \ bit-vec-0.6.3 \ bitflags-1.3.2 \ bitflags-2.6.0 \ buf_redux-0.8.4 \ buffer-redux-1.0.2 \ bv-0.11.1 \ bytecount-0.6.8 \ bytemuck-1.18.0 \ byteorder-1.5.0 \ bzip2-0.4.4 \ bzip2-sys-0.1.11+1.0.8 \ capnp-0.14.11 \ cargo-husky-1.5.0 \ cc-1.1.24 \ cfg-if-1.0.0 \ checkm-0.2.0 \ clap-3.2.25 \ clap-4.5.19 \ clap_builder-4.5.19 \ clap_complete-4.5.32 \ clap_lex-0.2.4 \ clap_lex-0.7.2 \ cmake-0.1.51 \ colorchoice-1.0.2 \ colored-1.9.4 \ concurrent-queue-2.5.0 \ crc32fast-1.4.2 \ crossbeam-deque-0.8.5 \ crossbeam-epoch-0.9.18 \ crossbeam-utils-0.8.20 \ csv-1.3.0 \ csv-core-0.1.11 \ custom_derive-0.1.7 \ derive-new-0.5.9 \ derive-new-0.6.0 \ difference-2.0.0 \ disjoint-0.8.0 \ editdistancek-1.0.2 \ either-1.13.0 \ enum-map-2.7.3 \ enum-map-derive-0.17.0 \ env_filter-0.1.2 \ env_logger-0.10.2 \ env_logger-0.11.5 \ environment-0.1.1 \ equivalent-1.0.1 \ errno-0.3.9 \ failure-0.1.8 \ failure_derive-0.1.8 \ fastrand-1.9.0 \ fastrand-2.1.1 \ feature-probe-0.1.1 \ finch-0.6.0 \ fixedbitset-0.4.2 \ flate2-1.0.34 \ form_urlencoded-1.2.1 \ fs-utils-1.1.4 \ fuchsia-cprng-0.1.1 \ fxhash-0.2.1 \ galah-0.4.2 \ gbdt-0.1.3 \ gcollections-1.5.0 \ getrandom-0.2.15 \ gimli-0.31.1 \ glob-0.3.1 \ hashbrown-0.12.3 \ hashbrown-0.15.0 \ heck-0.4.1 \ heck-0.5.0 \ hermit-abi-0.1.19 \ hermit-abi-0.4.0 \ home-0.5.9 \ hts-sys-2.1.4 \ humantime-2.1.0 \ idna-0.5.0 \ ieee754-0.2.6 \ indexmap-1.9.3 \ indexmap-2.6.0 \ instant-0.1.13 \ intervallum-1.4.1 \ is-terminal-0.4.13 \ is_terminal_polyfill-1.70.1 \ itertools-0.11.0 \ itertools-num-0.1.3 \ itoa-1.0.11 \ jobserver-0.1.32 \ lazy_static-1.5.0 \ libc-0.2.159 \ libm-0.2.8 \ libz-sys-1.1.20 \ linear-map-1.2.0 \ linux-raw-sys-0.4.14 \ log-0.4.22 \ lzma-sys-0.1.20 \ matrixmultiply-0.3.9 \ memchr-2.7.4 \ memmap-0.7.0 \ memoffset-0.7.1 \ miniz_oxide-0.8.0 \ multimap-0.9.1 \ murmurhash3-0.0.5 \ nalgebra-0.29.0 \ nalgebra-0.32.6 \ nalgebra-macros-0.1.0 \ nalgebra-macros-0.2.2 \ ndarray-0.15.6 \ needletail-0.4.1 \ needletail-0.5.1 \ newtype_derive-0.1.6 \ nix-0.26.4 \ num-complex-0.4.6 \ num-integer-0.1.46 \ num-rational-0.4.2 \ num-traits-0.2.19 \ object-0.36.5 \ once_cell-1.20.1 \ ordered-float-3.9.2 \ os_str_bytes-6.6.1 \ partitions-0.2.4 \ paste-1.0.15 \ percent-encoding-2.3.1 \ petgraph-0.6.5 \ pin-utils-0.1.0 \ pkg-config-0.3.31 \ portable-atomic-1.9.0 \ ppv-lite86-0.2.20 \ proc-macro2-1.0.86 \ quick-error-1.2.3 \ quote-1.0.37 \ rand-0.4.6 \ rand-0.8.5 \ rand_chacha-0.3.1 \ rand_core-0.3.1 \ rand_core-0.4.2 \ rand_core-0.6.4 \ rand_distr-0.4.3 \ rawpointer-0.2.1 \ rayon-1.10.0 \ rayon-core-1.12.1 \ rdrand-0.4.0 \ redox_syscall-0.1.57 \ regex-1.11.0 \ regex-automata-0.4.8 \ regex-syntax-0.8.5 \ remove_dir_all-0.5.3 \ roff-0.1.0 \ roff-0.2.2 \ rust-htslib-0.44.1 \ rust-lapper-1.1.0 \ rustc-demangle-0.1.24 \ rustc_version-0.1.7 \ rustix-0.38.37 \ rustversion-1.0.17 \ ryu-1.0.18 \ safe_arch-0.7.2 \ safemem-0.3.3 \ semver-0.1.20 \ serde-1.0.210 \ serde_derive-1.0.210 \ serde_json-1.0.128 \ shlex-1.3.0 \ simba-0.6.0 \ simba-0.8.1 \ simple-logging-2.0.2 \ skani-0.1.1 \ smallvec-1.13.2 \ statrs-0.16.1 \ statrs-0.17.1 \ strsim-0.10.0 \ strsim-0.11.1 \ strum-0.25.0 \ strum_macros-0.25.3 \ strum_macros-0.26.4 \ syn-1.0.109 \ syn-2.0.79 \ synstructure-0.12.6 \ tempdir-0.3.7 \ tempfile-3.13.0 \ termcolor-1.4.1 \ textwrap-0.16.1 \ thiserror-1.0.64 \ thiserror-impl-1.0.64 \ thread-id-3.3.0 \ tikv-jemalloc-sys-0.6.0+5.3.0-1-ge13ca993e8ccb9ba9847cc330696e02839f328f7 \ tikv-jemallocator-0.6.0 \ tinyvec-1.8.0 \ tinyvec_macros-0.1.1 \ trilean-1.1.0 \ triple_accel-0.4.0 \ typenum-1.17.0 \ unicode-bidi-0.3.17 \ unicode-ident-1.0.13 \ unicode-normalization-0.1.24 \ unicode-xid-0.2.6 \ url-2.5.2 \ utf8parse-0.2.2 \ vcpkg-0.2.15 \ vec_map-0.8.2 \ version-compare-0.1.1 \ version-compare-0.2.0 \ wasi-0.11.0+wasi-snapshot-preview1 \ which-6.0.3 \ wide-0.7.28 \ winapi-0.3.9 \ winapi-i686-pc-windows-gnu-0.4.0 \ winapi-util-0.1.9 \ winapi-x86_64-pc-windows-gnu-0.4.0 \ windows-sys-0.52.0 \ windows-sys-0.59.0 \ windows-targets-0.52.6 \ windows_aarch64_gnullvm-0.52.6 \ windows_aarch64_msvc-0.52.6 \ windows_i686_gnu-0.52.6 \ windows_i686_gnullvm-0.52.6 \ windows_i686_msvc-0.52.6 \ windows_x86_64_gnu-0.52.6 \ windows_x86_64_gnullvm-0.52.6 \ windows_x86_64_msvc-0.52.6 \ winsafe-0.0.19 \ xz2-0.1.7 \ zerocopy-0.7.35 \ zerocopy-derive-0.7.35 PLIST_FILES= bin/${PORTNAME} post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/${PORTNAME} .include <bsd.port.mk>
