Path: blob/main/biology/bio-mocha/files/patch-Makefile
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--- Makefile.orig 2024-09-12 15:06:36 UTC
+++ Makefile
@@ -59,13 +59,14 @@ misc_bindir = $(bindir)
# Installation location for $(MISC_PROGRAMS) and $(MISC_SCRIPTS)
misc_bindir = $(bindir)
-MKDIR_P = mkdir -p
-INSTALL = install -p
-INSTALL_DATA = $(INSTALL) -m 644
-INSTALL_DIR = $(MKDIR_P) -m 755
-INSTALL_MAN = $(INSTALL_DATA)
-INSTALL_PROGRAM = $(INSTALL)
-INSTALL_SCRIPT = $(INSTALL_PROGRAM)
+# Use BSD_INSTALL_PROGRAM to strip when WITH_DEBUG not set
+MKDIR_P = mkdir -p
+INSTALL = install -p
+INSTALL_DATA = ${BSD_INSTALL_DATA}
+INSTALL_DIR = $(MKDIR_P)
+INSTALL_MAN = ${BSD_INSTALL_MAN}
+INSTALL_PROGRAM = ${BSD_INSTALL_PROGRAM}
+INSTALL_SCRIPT = ${BSD_INSTALL_SCRIPT}
PROGRAMS = bcftools
MISC_SCRIPTS = \
@@ -144,7 +145,7 @@ ifdef USE_GPL
main.o : EXTRA_CPPFLAGS += -DUSE_GPL
OBJS += polysomy.o peakfit.o
ifndef GSL_LIBS
- GSL_LIBS += -lgsl -lcblas
+ GSL_LIBS += -lgslcblas
endif
endif