PORTNAME= bowtie DISTVERSIONPREFIX= v DISTVERSION= 1.3.1 CATEGORIES= biology MAINTAINER= [email protected] COMMENT= Ultrafast, memory-efficient short read aligner WWW= https://bowtie-bio.sourceforge.net/index.shtml LICENSE= ART10 ONLY_FOR_ARCHS= aarch64 amd64 powerpc64 powerpc64le riscv64 # c++11-lib is just for GCC 4.2-based systems # Remove it when support officially ends USES= compiler:c++11-lib gmake perl5 python:run shebangfix USE_PERL5= run USE_GITHUB= yes SHEBANG_FILES= scripts/*.pl bowtie bowtie-build scripts/bowtie-hbb.sh \ bowtie-inspect GH_ACCOUNT= BenLangmead OPTIONS_DEFINE= DOCS .include <bsd.port.options.mk> .if ${ARCH:Mpowerpc64*} || ${ARCH} == aarch64 || ${ARCH:Mriscv64*} MAKE_ENV= POPCNT_CAPABILITY=0 .endif post-install: ${MKDIR} ${STAGEDIR}${DATADIR}/scripts ${INSTALL_SCRIPT} \ ${WRKSRC}/bowtie \ ${WRKSRC}/bowtie-build \ ${WRKSRC}/bowtie-inspect \ ${STAGEDIR}${PREFIX}/bin ${INSTALL_SCRIPT} \ ${WRKSRC}/scripts/*.sh \ ${WRKSRC}/scripts/*.pl \ ${STAGEDIR}${DATADIR}/scripts cd ${WRKSRC} && ${COPYTREE_SHARE} \ 'genomes indexes reads' \ ${STAGEDIR}${DATADIR} cd ${WRKSRC}/doc && ${COPYTREE_SHARE} \ \* \ ${STAGEDIR}${DOCSDIR} ${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*-[sl] .include <bsd.port.mk>
