PORTNAME= bowtie2 DISTVERSIONPREFIX= v DISTVERSION= 2.5.4 CATEGORIES= biology perl5 python MAINTAINER= [email protected] COMMENT= Ultrafast, memory-efficient short read aligner WWW= https://github.com/BenLangmead/bowtie2 LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/LICENSE ONLY_FOR_ARCHS= aarch64 amd64 powerpc64 powerpc64le ONLY_FOR_ARCHS_REASON= Requires a 64-bit processor RUN_DEPENDS= bash:shells/bash USES= gmake localbase:ldflags perl5 python shebangfix USE_PERL5= run USE_GITHUB= yes SHEBANG_FILES= bowtie2 bowtie2-build bowtie2-inspect \ scripts/bowtie2-hbb.sh scripts/*.pl GH_ACCOUNT= BenLangmead GH_TUPLE= simd-everywhere:simde-no-tests:f6a0b3b:simde OPTIONS_DEFINE= DOCS EXAMPLES SUB_FILES= bowtie2-test .include <bsd.port.options.mk> .if ${ARCH} != amd64 post-extract: (cd ${WRKSRC_simde}; \ ${COPYTREE_SHARE} . ${WRKSRC}/third_party/simde/) MAKE_ENV= POPCNT_CAPABILITY=0 .endif pre-configure: @${REINPLACE_CMD} \ -e 's|^RELEASE_FLAGS|# RELEASE_FLAGS|' \ -e 's|tbbmalloc_proxy|tbbmalloc|' \ ${WRKSRC}/Makefile post-install: @${MKDIR} ${STAGEDIR}${DATADIR}/scripts ${INSTALL_PROGRAM} \ ${WRKSRC}/bowtie2*-s \ ${WRKSRC}/bowtie2*-l \ ${STAGEDIR}${PREFIX}/bin ${INSTALL_SCRIPT} \ ${WRKSRC}/scripts/*.sh \ ${WRKSRC}/scripts/*.pl \ ${STAGEDIR}${DATADIR}/scripts ${INSTALL_SCRIPT} ${WRKDIR}/bowtie2-test ${STAGEDIR}${PREFIX}/bin post-install-DOCS-on: (cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) post-install-EXAMPLES-on: (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) .include <bsd.port.mk>
