Makefile

# Makefile for SIAM Article Template with PythonTeX
# Optimized for CoCalc LaTeX environment

# Main document
MAIN = main
TEX_FILE = $(MAIN).tex
PDF_FILE = $(MAIN).pdf

# LaTeX compiler settings
LATEX = pdflatex
LATEXFLAGS = -shell-escape -interaction=nonstopmode -file-line-error

# Bibliography processor
BIBTEX = bibtex

# PythonTeX processor
PYTHONTEX = pythontex

# Default target
all: $(PDF_FILE)

# Full build with PythonTeX
$(PDF_FILE): $(TEX_FILE)
	@echo "Building SIAM article with PythonTeX..."
	$(LATEX) $(LATEXFLAGS) $(MAIN)
	$(PYTHONTEX) $(MAIN)
	$(LATEX) $(LATEXFLAGS) $(MAIN)
	$(LATEX) $(LATEXFLAGS) $(MAIN)
	@echo "Build complete: $(PDF_FILE)"

# Quick build without PythonTeX (for drafts)
draft: $(TEX_FILE)
	@echo "Quick draft build..."
	$(LATEX) $(LATEXFLAGS) $(MAIN)

# Clean auxiliary files
clean:
	rm -f *.aux *.log *.bbl *.blg *.toc *.out *.nav *.snm
	rm -f *.fdb_latexmk *.fls *.synctex.gz
	rm -f *.pytxcode *.figpytx *.makepytx *.figpytx *.pytxpyg
	rm -f *.pytxmcr *.pytxpyg
	rm -f pythontex-files-$(MAIN)/*
	rm -rf pythontex-files-$(MAIN)/
	rm -f *.png *.pdf.figpytx

# Deep clean including PDF
distclean: clean
	rm -f $(PDF_FILE)

# Watch for changes (requires inotify-tools)
watch:
	@echo "Watching for changes to $(TEX_FILE)..."
	while inotifywait -e modify $(TEX_FILE); do make; done

# Continuous build for development
dev:
	@echo "Development mode - building on changes..."
	@make
	@make watch

# Install missing packages (CoCalc specific)
install-deps:
	@echo "Installing/updating LaTeX packages for SIAM template..."
	@echo "Note: In CoCalc, most packages are pre-installed"
	@echo "If you encounter missing packages, contact CoCalc support"

# Spell check (if aspell is available)
spell:
	@if command -v aspell >/dev/null 2>&1; then \
		aspell -t -c $(TEX_FILE); \
	else \
		echo "aspell not available for spell checking"; \
	fi

# Count words (approximate)
wordcount:
	@echo "Approximate word count:"
	@texcount -total -brief $(TEX_FILE)

# Show compilation info
info:
	@echo "SIAM LaTeX Template Information:"
	@echo "  Main file: $(TEX_FILE)"
	@echo "  Output: $(PDF_FILE)"
	@echo "  Compiler: $(LATEX) with flags: $(LATEXFLAGS)"
	@echo "  PythonTeX: $(PYTHONTEX)"
	@echo ""
	@echo "Available targets:"
	@echo "  all       - Full build with PythonTeX (default)"
	@echo "  draft     - Quick build without PythonTeX"
	@echo "  clean     - Remove auxiliary files"
	@echo "  distclean - Remove all generated files"
	@echo "  watch     - Watch for file changes and rebuild"
	@echo "  dev       - Development mode (build + watch)"
	@echo "  spell     - Spell check (if aspell available)"
	@echo "  wordcount - Count words in document"
	@echo "  info      - Show this information"

# Help target
help: info

.PHONY: all draft clean distclean watch dev install-deps spell wordcount info help