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Instructions to install GAP 4.9.0 and its standard packages in a CoCalc project

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Kernel: Bash (Linux)

Install GAP 4.9.0 in a CoCalc project

Read on for instructions on how to build GAP yourself in your project.

These instructions should work under any Linux or macOS system.

To install in a CoCalc project, you can copy this notebook and evaluate each cell.

Install GAP 4.9.0 following instructions on the GAP website

Note that GAP 4.9.0 is a beta release for GAP 4.9.

If you prefer to install a stable version, see Instructions to install GAP 4.8.10 and its standard packages in a CoCalc project.

To install GAP 4.9.0, see instructions at

Note in particular that the path to the GAP directory should not contain spaces.

For a system-wide install, note the extra step in the INSTALL file:

  (If you unpack the archive as root user under Unix, make sure that you
  issue the command `umask 022` before, to ensure that users will have
  permissions to read the files.)

System-wide installation on CoCalc is discussed at

Download the tarball

Done here using curl; one could alternatively use wget.

In a CoCalc project without internet access, you could

REMOTE='https://www.gap-system.org/pub/gap/gap-4.9/beta'
VERSION='gap-4.9.0'
TARBALL=$VERSION'.tar.bz2'

curl -C - --retry 99 -o $TARBALL $REMOTE/$TARBALL
% Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 292M 100 292M 0 0 21.5M 0 0:00:13 0:00:13 --:--:-- 32.6M

Check the sha256 hash

sha256sum gap-4.9.0.tar.bz2
c599c49401d91622d0f356b448ce53f4ad0e966f29edd51935269f237e348035 gap-4.9.0.tar.bz2

Unpack the tarball

tar xjf $TARBALL

ls | grep -E "^gap"
gap-4.9.0 gap-4.9.0.tar.bz2 gap-trial.ipynb gap4r8 gap4r8p10_2018_01_15-13_02.tar.bz2

Change directory, configure and make

cd $VERSION

./configure; make
checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gcc option to accept ISO C99... none needed checking ABI flags... checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of void *... 8 checking ABI bit size... 64 checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for a BSD-compatible install... /usr/bin/install -c checking for a thread-safe mkdir -p... /bin/mkdir -p checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... gawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether byte ordering is bigendian... no checking whether right shifts are arithmetic... yes checking for __attribute__((always_inline))... yes checking for __attribute__((noinline))... yes checking for __attribute__((noreturn))... yes checking for __builtin_smul_overflow... yes checking for __builtin_smull_overflow... yes checking for __builtin_smulll_overflow... yes checking for __builtin_clz... yes checking for __builtin_clzl... yes checking for __builtin_clzll... yes checking for __builtin_popcountl... yes checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking whether to enable HPC-GAP... no checking whether to enable debug mode... no checking whether to treat C compiler warnings as errors... no checking whether C compiler accepts -Werror=unknown-warning-option... no checking whether C compiler accepts -Wno-suggest-attribute=format... yes checking whether C compiler accepts -fno-strict-aliasing... yes checking whether C compiler accepts -Wall... yes checking whether C compiler accepts -Wextra... yes checking whether C compiler accepts -Wundef... yes checking whether C compiler accepts -Wnested-externs... yes checking whether C compiler accepts -Wwrite-strings... yes checking whether C compiler accepts -Wpointer-arith... yes checking whether C compiler accepts -Wredundant-decls... yes checking whether C compiler accepts -Wno-unused-parameter... yes checking whether C compiler accepts -Wmissing-field-initializers... yes checking whether C compiler accepts -Wformat=2... yes checking whether C compiler accepts -Wold-style-definition... yes checking whether C compiler accepts -Wformat-nonliteral... yes checking whether C compiler accepts -Wformat-security... yes checking whether C compiler accepts -Wno-sign-compare... yes checking whether C compiler accepts -Wstrict-aliasing... yes checking whether C compiler accepts -Wshadow... yes checking whether C compiler accepts -Winline... yes checking whether C compiler accepts -Wpacked... yes checking whether C compiler accepts -Wmissing-format-attribute... yes checking whether C compiler accepts -Winit-self... yes checking whether C compiler accepts -Wredundant-decls... (cached) yes checking whether C compiler accepts -Wmissing-include-dirs... yes checking whether C compiler accepts -Wunused-but-set-variable... yes checking whether C compiler accepts -Warray-bounds... yes checking whether C compiler accepts -Wimplicit-function-declaration... yes checking whether C compiler accepts -Wreturn-type... yes checking whether C compiler accepts -Wswitch-enum... yes checking whether C compiler accepts -Wno-implicit-fallthrough... yes checking whether C compiler accepts -Wno-inline... yes checking whether C compiler accepts -Wno-error=unused-parameter... yes checking whether C compiler accepts -Wno-error=sign-compare... yes checking whether C compiler accepts -Wno-error=implicit-fallthrough... no checking whether C compiler accepts -Wno-error=inline... yes checking whether to try and use __builtin_popcntl... yes checking gmp.h usability... yes checking gmp.h presence... yes checking for gmp.h... yes checking for __gmpz_init in -lgmp... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_ding in -lreadline... yes checking whether to enable compatibility mode for packages... yes configure: in-tree build checking unaligned access... 2 checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for library containing openpty... -lutil checking util.h usability... no checking util.h presence... no checking for util.h... no checking pty.h usability... yes checking pty.h presence... yes checking for pty.h... yes checking libutil.h usability... no checking libutil.h presence... no checking for libutil.h... no checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking for select... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for pid_t... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for popen... yes checking for sig_atomic_t... yes checking for signal... yes checking for sigaction... yes checking for setpgid... yes checking for rld_load... no
WARNING: Some output was deleted.

Change to pkg to install packages

cd pkg

../bin/BuildPackages.sh
Using GAP root /home/user/gap-4.9.0 Building with 64-bit ABI Attempting to build GAP packages. Note that many GAP packages require extra programs to be installed, and some are quite difficult to build. Please read the documentation for packages which fail to build correctly, and only worry about packages you require! Thu Feb 8 06:38:08 UTC 2018 ==== Checking GAPDoc-1.6.1 No building required for GAPDoc-1.6.1 Thu Feb 8 06:38:08 UTC 2018 ==== Checking recogbase-1.2.5 No building required for recogbase-1.2.5 Thu Feb 8 06:38:08 UTC 2018 ==== Checking alnuth-3.1.0 No building required for alnuth-3.1.0 Thu Feb 8 06:38:08 UTC 2018 ==== Checking sophus No building required for sophus Thu Feb 8 06:38:08 UTC 2018 ==== Checking format No building required for format Thu Feb 8 06:38:08 UTC 2018 ==== Checking 4ti2Interface-2017.10.04 No building required for 4ti2Interface-2017.10.04 Thu Feb 8 06:38:08 UTC 2018 ==== Checking polycyclic-2.11 No building required for polycyclic-2.11 Thu Feb 8 06:38:08 UTC 2018 ==== Checking profiling-1.3.0 Running './configure' '--with-gaproot=/home/user/gap-4.9.0' checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for ar... ar checking the archiver (ar) interface... ar checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for CONFIGNAME... none checking for GAP root directory... /home/user/gap-4.9.0 checking for GAP architecture... x86_64-pc-linux-gnu-default64 checking for GAP include files... /home/user/gap-4.9.0/src/compiled.h checking for GAP config.h... /home/user/gap-4.9.0/bin/x86_64-pc-linux-gnu-default64/config.h checking for GAP's gmp.h location... not found, GAP was compiled without GMP checking size of void **... 8 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/pkgconfig.h config.status: executing depfiles commands config.status: executing libtool commands Running 'make' CXX src/profiling_la-profiling.lo CXXLD profiling.la /bin/mkdir -p ./bin/x86_64-pc-linux-gnu-default64 cp .libs/profiling.so /home/user/gap-4.9.0/pkg/profiling-1.3.0/bin/x86_64-pc-linux-gnu-default64/profiling.so SUCCESS! Thu Feb 8 06:38:19 UTC 2018 ==== Checking ModulePresentationsForCAP-2017.09.09 No building required for ModulePresentationsForCAP-2017.09.09 Thu Feb 8 06:38:19 UTC 2018 ==== Checking atlasrep Thu Feb 8 06:38:19 UTC 2018 ==== Checking crime No building required for crime Thu Feb 8 06:38:19 UTC 2018 ==== Checking GradedRingForHomalg-2017.09.02 No building required for GradedRingForHomalg-2017.09.02 Thu Feb 8 06:38:19 UTC 2018 ==== Checking PolymakeInterface Running './configure' '/home/user/gap-4.9.0' polymake has been built without callable library, probably because of missing shared library libperl. polymake has been built without callable library, probably because of missing shared library libperl. polymake has been built without callable library, probably because of missing shared library libperl. polymake has been built without callable library, probably because of missing shared library libperl. Running 'make' mkdir -p bin/x86_64-pc-linux-gnu-default64 cp /home/user/gap-4.9.0/bin/x86_64-pc-linux-gnu-default64/config.h bin/x86_64-pc-linux-gnu-default64/ g++ -fPIC -Wall -O0 -g -pipe -m64 -o bin/x86_64-pc-linux-gnu-default64/polymake_fktn.o -I/home/user/gap-4.9.0/bin/x86_64-pc-linux-gnu-default64/extern/gmp/include -I/home/user/gap-4.9.0/bin/x86_64-pc-linux-gnu-default64/../.. -I/home/user/gap-4.9.0/bin/x86_64-pc-linux-gnu-default64 -DCONFIG_H -c src/polymake_fktn.cpp cp /home/user/gap-4.9.0/bin/x86_64-pc-linux-gnu-default64/config.h bin/x86_64-pc-linux-gnu-default64/ g++ -fPIC -Wall -O0 -g -pipe -m64 -o bin/x86_64-pc-linux-gnu-default64/polymake_main.o -I/home/user/gap-4.9.0/bin/x86_64-pc-linux-gnu-default64/extern/gmp/include -I/home/user/gap-4.9.0/bin/x86_64-pc-linux-gnu-default64/../.. -I/home/user/gap-4.9.0/bin/x86_64-pc-linux-gnu-default64 -DCONFIG_H -c src/polymake_main.cpp
WARNING: Some output was deleted. 
ls
4ti2Interface-2017.10.04 automgrp linboxing AutoDoc-2017.09.08 autpgrp log Browse carat loops CAP-2017.09.25 circle-1.6.1 lpres-0.4.2 Convex cohomolo-1.6.6 mapclass Example-4.0.0 congruence-1.2.1 matgrp ExamplesForHomalg-2017.09.02 corelg modisom FPLSA-1.2.1 crime nilmat-1.3 FactInt-1.6.1 crisp-1.4.4 nq-2.5.3 GAPDoc-1.6.1 crypting-0.7 orb-4.8.0 Gauss-2017.12.07 cryst pargap GaussForHomalg-2017.09.10 crystcat permut GeneralizedMorphismsForCAP-2017.09.09 ctbllib polenta-1.3.8 GradedModules-2017.09.10 cubefree polycyclic-2.11 GradedRingForHomalg-2017.09.02 cvec-2.5.7 polymaking HAPcryst design primgrp-3.3.0 Hap1.12 digraphs-0.12.0 profiling-1.3.0 HomalgToCAS-2017.11.26 edim qaos-1.5 IO_ForHomalg-2017.09.02 fga qpa-1.27 IntPic-0.2.3 fining quagroup LinearAlgebraForCAP-2017.09.09 float-0.9.0 radiroot LocalizeRingForHomalg-2017.09.02 format rcwa-4.6.1 MatricesForHomalg-2018.01.17 forms rds ModulePresentationsForCAP-2017.09.09 fr-2.4.3 recog-1.2.5 Modules-2018.01.07 fwtree recogbase-1.2.5 NormalizInterface-1.0.2 gbnp repsn NumericalSgps-1.1.5 genss-1.6.5 resclasses-4.7.1 OpenMath-11.4.2 grape semigroups-3.0.12 PatternClass-2.4.1 groupoids-1.54 sglppow PolymakeInterface grpconst simpcomp RingsForHomalg-2018.01.07 guarana singular SCO-2017.09.10 guava-3.13 sla SCSCP-2.2.3 happrime smallgrp-1.2 SgpViz-0.999.1 hecke smallsemi-0.6.11 SymbCompCC-1.2 help sonata ToolsForHomalg-2018.01.25 homalg-2017.10.26 sophus Toric-1.9.4 idrel-2.38 spinsym ToricVarieties io-4.5.1 tomlib XMod-2.64 irredsol-1.4 transgrp XModAlg-1.16 itc unipot-1.2 ZeroMQInterface-0.9 json-1.2.0 unitlib-3.3.0 ace-5.2 kan-1.27 utils-0.53 aclib kbmag-1.5.4 uuid-0.4 alnuth-3.1.0 laguna-3.8.0 wedderga-4.9.1 anupq-3.2 liealgdb xgap-4.26 atlasrep liepring automata liering

Test

cd ..

ls
CITATION README.hpcgap.md configure.ac hpcgap CONTRIBUTING.md README.md doc lib GNUmakefile aclocal.m4 etc libtool GNUmakefile.in autogen.sh extern obj INSTALL.md bin gac pkg LICENSE cnf gap src Makefile config.log gap.ini sysinfo.gap Makefile.rules config.status gen sysinfo.gap-default64 README.buildsys.md configure grp tst 
ls bin
BuildPackages.sh gap.sh x86_64-pc-linux-gnu-default64 xgap.sh 
cd

echo 'Read(Filename(DirectoriesLibrary("tst"), "testinstall.g"));' > test_gap.g

$VERSION/bin/gap.sh test_gap.g
┌───────┐ GAP 4.9.0 of 01-Feb-2018 │ GAP │ https://www.gap-system.org └───────┘ Architecture: x86_64-pc-linux-gnu-default64 Configuration: gmp 6.1.0, readline Loading the library and packages ... > Packages: AClib 1.2, Alnuth 3.1.0, AtlasRep 1.5.1, AutPGrp 1.8, Browse 1.8.7, CRISP 1.4.4, Cryst 4.1.13, CrystCat 1.1.6, CTblLib 1.2.2, FactInt 1.6.1, FGA 1.3.1, GAPDoc 1.6.1, IO 4.5.1, IRREDSOL 1.4, LAGUNA 3.8.0, Polenta 1.3.8, Polycyclic 2.11, PrimGrp 3.3.0, RadiRoot 2.7, ResClasses 4.7.1, smallgrp 1.2, Sophus 1.23, SpinSym 1.5, TomLib 1.2.6, TransGrp 2.0.2, utils 0.53 Try '??help' for help. See also '?copyright', '?cite' and '?authors' You should start GAP4 using `gap -A -x 80 -r -m 100m -o 1g -K 2g'. Architecture: x86_64-pc-linux-gnu-default64 testing: /home/user/gap-4.9.0/tst/testinstall/DirectProductElement.tst 86 ms (81 ms GC) and 151KB allocated for DirectProductElement.tst testing: /home/user/gap-4.9.0/tst/testinstall/ElmsBlist.tst 89 ms (70 ms GC) and 4.32MB allocated for ElmsBlist.tst testing: /home/user/gap-4.9.0/tst/testinstall/alghom.tst 141 ms (69 ms GC) and 3.14MB allocated for alghom.tst testing: /home/user/gap-4.9.0/tst/testinstall/algmat.tst 1402 ms (189 ms GC) and 227MB allocated for algmat.tst testing: /home/user/gap-4.9.0/tst/testinstall/algrep.tst 1850 ms (170 ms GC) and 147MB allocated for algrep.tst testing: /home/user/gap-4.9.0/tst/testinstall/algsc.tst 451 ms (68 ms GC) and 30.5MB allocated for algsc.tst testing: /home/user/gap-4.9.0/tst/testinstall/atomic_basic.tst 73 ms (71 ms GC) and 192KB allocated for atomic_basic.tst testing: /home/user/gap-4.9.0/tst/testinstall/atomic_list.tst
WARNING: Some output was deleted.

What to do from here?

You can open a gap session as follows:

  • open a CoCalc terminal

  • type GAP-4.9.0/bin/gap.sh followed by ENTER

You can then follow the GAP tutorial:

You could also install extra GAP packages. Usually this works by copying them in ~/.gap/pkg (creating these folders if necessary), and sometimes you need to run configure and make there.

For example, see YAGS ("yet another graph system").