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GAP 4.8.9 installation with standard packages -- copy to your CoCalc project to get it

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#############################################################################
##
##  AutoDoc package
##
##  Copyright 2012-2016
##    Sebastian Gutsche, University of Kaiserslautern
##    Max Horn, Justus-Liebig-Universität Gießen
##
## Licensed under the GPL 2 or later.
##
#############################################################################

##
InstallValue( AUTODOC_XML_HEADER,
    Concatenation(
    "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n\n",
    "<!-- This is an automatically generated file. -->\n"
    )
);

InstallValue( _AUTODOC_GLOBAL_OPTION_RECORD,
              rec( AutoDocMainFile := "_AutoDocMainFile.xml" ) );


InstallGlobalFunction( AUTODOC_SetIfMissing,
  function( record, name, val )
    if not IsBound( record.(name) ) then
        record.(name) := val;
    fi;
end );

##
InstallGlobalFunction( AUTODOC_APPEND_STRING_ITERATIVE,
  function( arg )
    local string, i;

    string := arg[ 1 ];
    for i in [ 2 .. Length( arg ) ] do
        Append( string, arg[ i ] );
    od;
    Append( string, "\n" );
end );

##
## Given two records, this adds all key/values pairs of the
## second record to the first record, unless the first record already
## has an entry for that key.
InstallGlobalFunction( AUTODOC_MergeRecords,
  function( dst, src )
    local key;
    for key in RecNames( src ) do
        AUTODOC_SetIfMissing( dst, key, src.( key ) );
    od;
end );

##
InstallGlobalFunction( CreateDefaultChapterData,
  function( pkgname )
    local chapter_name, default_chapter_record, list_of_types, i;

    if not IsString( pkgname ) then
        Error( "CreateDefaultChapterData must be called with a possible package name\n" );
    fi;

    chapter_name := Concatenation( pkgname, "_automatic_generated_documentation" );
    default_chapter_record := rec();
    list_of_types := [ "categories", "methods", "attributes", "properties",
                       "global_functions", "global_variables" ];

    for i in list_of_types do
        default_chapter_record.(i) := [ chapter_name, Concatenation( chapter_name, "_of_", i ) ];
    od;

    return default_chapter_record;
end );

##
InstallGlobalFunction( CreateMainPage,
  function( book_name, dir, opt )
    local filename, filestream, i, ent, val;

    if IsString(dir) then
        dir := Directory(dir);
    fi;

    if not IsBound( opt.entities ) then
        opt.entities := rec();
    fi;

    # add book_name unconditionally to the list of entities
    if IsRecord( opt.entities ) then
        if not IsBound(opt.entities.(book_name)) then
            opt.entities.(book_name) := Concatenation( "<Package>", book_name, "</Package>" );
        fi;
    else
        Add( opt.entities, book_name );
    fi;

    if IsBound( opt.main_xml_file ) then
        filename := opt.main_xml_file;
    else
        filename := Concatenation( book_name, ".xml" );
    fi;

    filestream := AUTODOC_OutputTextFile( dir, filename );

    AppendTo( filestream, AUTODOC_XML_HEADER );
    AppendTo( filestream, "<!DOCTYPE Book SYSTEM \"gapdoc.dtd\"\n[\n" );
    AppendTo( filestream, "<!ENTITY see '<Alt Only=\"LaTeX\">$\to$</Alt><Alt Not=\"LaTeX\">--&gt;</Alt>'>\n" );

    if IsList( opt.entities ) then
        for i in opt.entities do
            ## allow generic entities.
            if IsString( i ) and PositionSublist( i, "!ENTITY" ) <> fail then
                AppendTo( filestream, i );
                AppendTo( filestream, "\n" );
                continue;
            fi;

            if IsString( i ) then
                i := [ "Package", i ];
            fi;

            AppendTo( filestream, "<!ENTITY ",
                      ReplacedString( i[ 2 ], " ", "_" ),
                      " '<", i[ 1 ], ">", i[ 2 ], "</", i[ 1 ], ">'>\n" );
        od;
    else
        for ent in RecNames(opt.entities) do
            val := String(opt.entities.(ent));
            # escape single quotes, if any
            val := ReplacedString( val, "'", "\\\'" );
            AppendTo( filestream, "<!ENTITY ", ent, " '", val, "'>\n" );
        od;
    fi;

    AppendTo( filestream, "]\n>\n" );
    AppendTo( filestream, "<Book Name=\"", ReplacedString( book_name, " ", "_" ), "\">\n" );
    AppendTo( filestream, "<#Include SYSTEM \"title.xml\">\n" );
    if not IsBound( opt.table_of_contents ) or opt.table_of_contents <> false then
        AppendTo( filestream, "<TableOfContents/>\n" );
    fi;
    AppendTo( filestream, "<Body>\n" );

    if IsBound( opt.includes ) then
        for i in opt.includes do
            AppendTo( filestream, "<#Include SYSTEM \"", i, "\">\n" );
        od;
    else
        AppendTo( filestream, "<#Include SYSTEM \"", _AUTODOC_GLOBAL_OPTION_RECORD.AutoDocMainFile, "\">\n" );
    fi;

    AppendTo( filestream, "</Body>\n" );
    if IsBound( opt.appendix ) then
        for i in opt.appendix do
            AppendTo( filestream, "<#Include SYSTEM \"", i, "\">\n" );
        od;
    fi;

    if IsBound( opt.bib ) and opt.bib <> false then
        AppendTo( filestream, "<Bibliography Databases=\"", opt.bib, "\"/>\n" );
    fi;

    if IsBound( opt.index ) and opt.index = true then
        AppendTo( filestream, "<TheIndex/>\n" );
    fi;

    AppendTo( filestream, "</Book>\n" );
    CloseStream( filestream );

    return true;
end );

##
InstallGlobalFunction( ExtractTitleInfoFromPackageInfo,
  function( pkginfo )
    local title_rec, i, tmp_list, j, author_rec, author_string;

    if IsBound( pkginfo.AutoDoc ) then
        title_rec := ShallowCopy( pkginfo.AutoDoc.TitlePage );
    else
        title_rec := rec( );
    fi;

    AUTODOC_SetIfMissing( title_rec, "Title", pkginfo.PackageName );
    AUTODOC_SetIfMissing( title_rec, "Subtitle", ReplacedString( pkginfo.Subtitle, "GAP", "&GAP;" ) );
    AUTODOC_SetIfMissing( title_rec, "Version", pkginfo.Version );

    ## Sanitize author info
    if not IsBound( title_rec.Author ) then
        title_rec.Author := [ ];
        i := 1;
        for author_rec in pkginfo.Persons do
            author_string := "";
            AUTODOC_APPEND_STRING_ITERATIVE( author_string,
                    author_rec.FirstNames, " ", author_rec.LastName,
                    "<Alt Only=\"LaTeX\"><Br/></Alt>" );
            if IsBound( author_rec.PostalAddress ) then
                tmp_list := SplitString( author_rec.PostalAddress, "\n" );
                AUTODOC_APPEND_STRING_ITERATIVE( author_string, "<Address>" );
                for j in tmp_list do
                    AUTODOC_APPEND_STRING_ITERATIVE( author_string, j, "<Br/>" );
                od;
                AUTODOC_APPEND_STRING_ITERATIVE( author_string, "</Address>" );
            fi;
            if IsBound( author_rec.Email ) then
                AUTODOC_APPEND_STRING_ITERATIVE( author_string, "<Email>", author_rec.Email, "</Email>" );
            fi;
            if IsBound( author_rec.WWWHome ) then
                AUTODOC_APPEND_STRING_ITERATIVE( author_string, "<Homepage>", author_rec.WWWHome, "</Homepage>" );
            fi;
            title_rec.Author[ i ] := author_string;
            i := i + 1;
        od;
    fi;
    AUTODOC_SetIfMissing( title_rec, "Date", pkginfo.Date );
    return title_rec;
end );

##
## This creates a titlepage out of an argument record.
## Please make sure that every entry in the record
## has the name of its tag, even title etc.
## Please note that entities will be treated
## separately.
InstallGlobalFunction( CreateTitlePage,
  function( dir, argument_rec )
    local indent, tag, names, filestream, entity_list, OutWithTag, Out, i,
          months;

    filestream := AUTODOC_OutputTextFile( dir, "title.xml" );
    indent := 0;

    Out := function(arg)
        local s;

        s := ListWithIdenticalEntries( indent * 2, ' ');
        Append( s, Concatenation( arg ) );
        AppendTo( filestream, s );
    end;

    OutWithTag := function( tag, content )
        local lines, s, l;

        if not IsList( content ) then
            Error( "can only print string or list of strings" );
        fi;
        if IsString( content ) then
            content := [ content ];
        fi;

        s := ListWithIdenticalEntries( indent * 2, ' ');
        AppendTo( filestream, s, "<", tag, ">\n" );
        for l in content do
            AppendTo( filestream, s, "  ", l, "\n" );
        od;
        AppendTo( filestream, s, "</", tag, ">\n" );
    end;

    Out( AUTODOC_XML_HEADER );
    Out( "<TitlePage>\n" );
    indent := indent + 1;

    for i in [ "Title", "Subtitle", "Version", "TitleComment" ] do
        if IsBound( argument_rec.( i ) ) then
            OutWithTag( i, argument_rec.( i ) );
        fi;
    od;

    if IsBound( argument_rec.Author ) then
        for i in argument_rec.Author do
            OutWithTag( "Author", i );
        od;
    fi;

    if IsBound( argument_rec.Date ) then
        # try to parse the date
        months := [ "January", "February", "March",
                    "April", "May", "June",
                    "July", "August", "September",
                    "October", "November", "December" ];
        i := SplitString( argument_rec.Date, "/" );
        if Length( argument_rec.Date ) in [8..10] and Length( i ) = 3 then
            OutWithTag( "Date", Concatenation(
                String( Int( i[1] ) ), " ", # remove leading 0, if any
                months[Int(i[2])], " ",
                i[3] ) );
        else
            Print("Warning: could not parse package date '", argument_rec.Date, "\n");
            OutWithTag( "Date", argument_rec.Date );
        fi;
    fi;

    for i in [ "Address", "Abstract", "Copyright", "Acknowledgements", "Colophon" ] do
        if IsBound( argument_rec.( i ) ) then
            OutWithTag( i, argument_rec.( i ) );
        fi;
    od;

    Out( "</TitlePage>" );
end );

InstallGlobalFunction( AUTODOC_PROCESS_INTRO_STRINGS,
  function( introduction_list, tree )
    local intro, intro_string, i;

    for intro in introduction_list do
        if Length( intro ) = 2 then
            intro_string := intro[ 2 ];
            if IsString( intro_string ) then
                intro_string := [ intro_string ];
            fi;
            for i in intro_string do
                Add( ChapterInTree( tree, ReplacedString( intro[ 1 ], " ", "_" ) ), i );
            od;
        elif Length( intro ) = 3 then
            intro_string := intro[ 3 ];
            if IsString( intro_string ) then
                intro_string := [ intro_string ];
            fi;
            for i in intro_string do
                Add( SectionInTree( tree, ReplacedString( intro[ 1 ], " ", "_" ),
                                          ReplacedString( intro[ 2 ], " ", "_" ) ), i );
            od;
        else
            Error( "wrong format of introduction string list\n" );
        fi;
    od;

    return tree;
end );

##
## Optional argument is PackageName, which creates a
## Default chapter record. This is not available for
## worksheets.
InstallGlobalFunction( AutoDocScanFiles,
  function( files_to_scan, pkgname, tree )
    local default_chapter_record;

    default_chapter_record := CreateDefaultChapterData( pkgname );
    AutoDoc_Parser_ReadFiles( files_to_scan, tree, default_chapter_record );
    return tree;
end );

##
InstallGlobalFunction( AutoDocWorksheet,
  function( arg )
    local autodoc_rec, scaffold_rec;

    if Length( arg ) = 1 then
        arg[ 2 ] := rec( );
    fi;

    scaffold_rec := ValueOption( "scaffold" );
    if scaffold_rec = fail then
        scaffold_rec := rec( );
    fi;
    AUTODOC_SetIfMissing( scaffold_rec, "index", false );

    if Length( arg ) = 2 then
        autodoc_rec := ValueOption( "autodoc" );
        if autodoc_rec = fail then
            autodoc_rec := rec( );
        fi;
        if IsString( arg[ 1 ] ) then
            arg[ 1 ] := [ arg[ 1 ] ];
        fi;
        if IsBound( autodoc_rec.files ) then
            Append( autodoc_rec.files, arg[ 1 ] );
        else
            autodoc_rec.files := arg[ 1 ];
        fi;
        AutoDoc( "AutoDocWorksheet", arg[ 2 ] : autodoc := autodoc_rec, scaffold := scaffold_rec );
    fi;

    if Length( arg ) = 0 then
        AutoDoc( "AutoDocWorksheet" : scaffold := scaffold_rec );
    fi;
end );

InstallGlobalFunction( CreateMakeTest,
  function( pkgdir, doc_dir, main, files_to_scan, argument_rec )
    local filename, filestream, i;

    if IsBound( argument_rec.name ) then
        filename := argument_rec.name;
    else
        filename := "maketest.g";
    fi;

    filestream := AUTODOC_OutputTextFile( pkgdir, filename );

    AppendTo( filestream, "## This file is automatically generated by AutoDoc.\n" );
    AppendTo( filestream, "## Changes will be discarded by the next call of the AutoDoc method.\n\n\n" );
    if IsBound( argument_rec.commands ) and IsList( argument_rec.commands ) then
        if IsString( argument_rec.commands ) and argument_rec.commands <> [ ] then
            argument_rec.commands := [ argument_rec.commands ];
        fi;
        for i in argument_rec.commands do
            AppendTo( filestream, i );
            AppendTo( filestream, "\n\n" );
        od;
    fi;

    AppendTo( filestream, "AUTODOC_file_scan_list := ", files_to_scan, ";\n\n" );
    AppendTo( filestream, "LoadPackage( \"GAPDoc\" );\n\n" );

    if not EndsWith(main, ".xml") then
        main := Concatenation( main, ".xml" );
    fi;

    AppendTo( filestream, "example_tree := ExtractExamples( ", doc_dir, ", ",
                          "\"", main, "\", ",
                          "AUTODOC_file_scan_list, 500 );\n\n" );
    AppendTo( filestream, "RunExamples( example_tree, rec( compareFunction := \"uptowhitespace\" ) );\n\n" );
    AppendTo( filestream, "QUIT;\n" );

    CloseStream( filestream );
end );