Book a Demo!
CoCalc Logo Icon
StoreFeaturesDocsShareSupportNewsAboutPoliciesSign UpSign In
Download
5558 views
ubuntu2204
Tweet
Share
Share
1
{

2
    "input": "~labs/data/case_study/GSE180869/ids.csv",

3
    "nf_core_pipeline": "rnaseq",

4
    "nf_core_rnaseq_strandedness": "auto",

5
    "ena_metadata_fields": null,

6
    "sample_mapping_fields": "experiment_accession,run_accession,sample_accession,experiment_alias,run_alias,sample_alias,experiment_title,sample_title,sample_description",

7
    "download_method": "sratools",

8
    "skip_fastq_download": false,

9
    "dbgap_key": null,

10
    "outdir": "/home/user/Assignment_2/scratch/fetchngs",

11
    "publish_dir_mode": "copy",

12
    "email": null,

13
    "email_on_fail": null,

14
    "plaintext_email": false,

15
    "monochrome_logs": false,

16
    "hook_url": null,

17
    "help": false,

18
    "version": false,

19
    "config_profile_name": null,

20
    "config_profile_description": null,

21
    "custom_config_version": "master",

22
    "max_cpus": 32,

23
    "max_memory": "128.GB",

24
    "custom_config_base": "https://raw.githubusercontent.com/nf-core/configs/master",

25
    "config_profile_contact": null,

26
    "config_profile_url": null,

27
    "max_time": "240.h",

28
    "validationFailUnrecognisedParams": false,

29
    "validationLenientMode": false,

30
    "validationShowHiddenParams": false,

31
    "validationSchemaIgnoreParams": "",

32
    "validate_params": true,

33
    "force_sratools_download": false

34
}

35